errors in installing the CDO
Added by Ahmed Shaaban almost 13 years ago
Hello
I am new to the CDO and i wanna to install it , after i type make , i get the following error.
here is the last lines of the make command.../src/.libs/libcdi.a(stream_cdf.o): In function `cdfDefVarDeflate':
/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:644: undefined reference to `nc_def_var_deflate'
../src/.libs/libcdi.a(stream_cdf.o): In function `cdfDefVar':
/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:2730: undefined reference to `nc_def_var_chunking'
../src/.libs/libcdi.a(stream_cdf.o): In function `scanVarAttributes':
/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:4216: undefined reference to `nc_inq_var_deflate'
collect2: ld returned 1 exit status
make[2]: *** [cdi] Error 1
make[2]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi/app'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi'
make: *** [all-recursive] Error 1
i have attached the full configure log file and also the make log file
thanks in advance .
| configure.log (18.4 KB) configure.log | this is the log file for the configure command | ||
| make.log (31.3 KB) make.log | this is the log file for make command |
Replies (7)
RE: errors in installing the CDO - Added by Ralf Mueller almost 13 years ago
I created an issue on that: #1237
For the time beeing, recompile your netcdf installation with
configure --enable-netcdf4You will need HDF5 for that. Other option is libs4cdo.
RE: errors in installing the CDO - Added by Ahmed Shaaban almost 13 years ago
Hello
i used the configure --enable-netcdf4
the error is gone but when i tried to use the cdo cdo sellonlatbox,0,360,20,-20 u_v_vor_25_25_2010_erainterium.nc ofile.nc
it give me the following error
cdo sellonlatbox: Open failed on >u_v_vor_25_25_2010_erainterium.nc<
Unsupported file type (library support not compiled in)
the error appear when i use configure option ./configure --with-netcdf=/usr/local/netcdf-4.1.2
i have netcdf installed on /usr/local and it is installed with gcc for c compiler and pgf90 for fortran compiler . have i to use the same compilation option of the netcdf for the CDO.
can i still use the netcdf installed on my computer with this option in installing the CDO.
thanks in advance .
RE: errors in installing the CDO - Added by Ralf Mueller almost 13 years ago
ahmed lasheen wrote:
Hello
i used the configure --enable-netcdf4
the error is gone but when i tried to use the cdocdo sellonlatbox,0,360,20,-20 u_v_vor_25_25_2010_erainterium.nc ofile.nc
it give me the following errorcdo sellonlatbox: Open failed on >u_v_vor_25_25_2010_erainterium.nc<
Unsupported file type (library support not compiled in)the error appear when i use configure option
./configure --with-netcdf=/usr/local/netcdf-4.1.2
i have netcdf installed on /usr/local and it is installed with gcc for c compiler and pgf90 for fortran compiler . have i to use the same compilation option of the netcdf for the CDO.
If you configured netcdf with --prefix=/usr/local you should use --with-netcdf=/usr/local for CDO. For safety, you should remove the /usr/local/netcdf-4.1.2 directory.
can i still use the netcdf installed on my computer with this option in installing the CDO.
Sure. You could have multiple netcdf installations at the same time. But you can use the installation in /usr/local for multiple purposes.
RE: errors in installing the CDO - Added by Ahmed Shaaban almost 13 years ago
Hello
finally the installation succeed, i use the following configure
./configure --with-netcdf=/usr/local/netcdf-4.1.2 --with-hdf5=/usr/local/hdf5
when i use the
configure --enable-netcdf4
it doesn't see the netcdf4.
Unsupported file type (library support not compiled in) - Added by Mouhamad AL SAYED ALI over 12 years ago
Dear all,
I have been trying to transfer netcdf file to grib usingcdo -f grb copy EH1PL1979.nc EH1PL1979.grb
but, I have obtained
------
do copy: Open failed on >EH1PL1979.nc<
Unsupported file type (library support not compiled in)
-----
Can anyone help me, please ?
Thanks
Mouhamad
RE: errors in installing the CDO - Added by Matthias Büchner almost 12 years ago
Hello
finally the installation succeed, i use the following configure./configure --with-netcdf=/usr/local/netcdf-4.1.2 --with-hdf5=/usr/local/hdf5
when i use theconfigure --enable-netcdf4
it doesn't see the netcdf4.
This is exactly what I saw during my attemps to compile cdo 1.5.5 with netCDF4 and compression support. It looks like --enable-netcdf4 does the opposite as what it should.
Thank you!
RE: errors in installing the CDO - Added by Ralf Mueller almost 12 years ago
The configure script of CDO does not have the --enable-netcdf4 option.
Is there a need for more detailed installation instructions?