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Making all in libcdi
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make[1]: Entering directory `/home/ahmed/cdo-1.5.0/libcdi'
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Making all in src
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make[2]: Entering directory `/home/ahmed/cdo-1.5.0/libcdi/src'
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make all-am
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make[3]: Entering directory `/home/ahmed/cdo-1.5.0/libcdi/src'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c -o basetime.lo basetime.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c basetime.c -fPIC -DPIC -o .libs/basetime.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c basetime.c -o basetime.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT binary.lo -MD -MP -MF .deps/binary.Tpo -c binary.c -fPIC -DPIC -o .libs/binary.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT binary.lo -MD -MP -MF .deps/binary.Tpo -c binary.c -o binary.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT calendar.lo -MD -MP -MF .deps/calendar.Tpo -c -o calendar.lo calendar.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT calendar.lo -MD -MP -MF .deps/calendar.Tpo -c calendar.c -fPIC -DPIC -o .libs/calendar.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT calendar.lo -MD -MP -MF .deps/calendar.Tpo -c calendar.c -o calendar.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdf.lo -MD -MP -MF .deps/cdf.Tpo -c -o cdf.lo cdf.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdf.lo -MD -MP -MF .deps/cdf.Tpo -c cdf.c -fPIC -DPIC -o .libs/cdf.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdf.lo -MD -MP -MF .deps/cdf.Tpo -c cdf.c -o cdf.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdf_int.lo -MD -MP -MF .deps/cdf_int.Tpo -c cdf_int.c -fPIC -DPIC -o .libs/cdf_int.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdf_int.lo -MD -MP -MF .deps/cdf_int.Tpo -c cdf_int.c -o cdf_int.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_error.lo -MD -MP -MF .deps/cdi_error.Tpo -c -o cdi_error.lo cdi_error.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_error.lo -MD -MP -MF .deps/cdi_error.Tpo -c cdi_error.c -fPIC -DPIC -o .libs/cdi_error.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_error.lo -MD -MP -MF .deps/cdi_error.Tpo -c cdi_error.c -o cdi_error.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_util.lo -MD -MP -MF .deps/cdi_util.Tpo -c -o cdi_util.lo cdi_util.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_util.lo -MD -MP -MF .deps/cdi_util.Tpo -c cdi_util.c -fPIC -DPIC -o .libs/cdi_util.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi_util.lo -MD -MP -MF .deps/cdi_util.Tpo -c cdi_util.c -o cdi_util.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdiFortran.lo -MD -MP -MF .deps/cdiFortran.Tpo -c -o cdiFortran.lo cdiFortran.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdiFortran.lo -MD -MP -MF .deps/cdiFortran.Tpo -c cdiFortran.c -fPIC -DPIC -o .libs/cdiFortran.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdiFortran.lo -MD -MP -MF .deps/cdiFortran.Tpo -c cdiFortran.c -o cdiFortran.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cgribexlib.lo -MD -MP -MF .deps/cgribexlib.Tpo -c -o cgribexlib.lo cgribexlib.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cgribexlib.lo -MD -MP -MF .deps/cgribexlib.Tpo -c cgribexlib.c -fPIC -DPIC -o .libs/cgribexlib.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cgribexlib.lo -MD -MP -MF .deps/cgribexlib.Tpo -c cgribexlib.c -o cgribexlib.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT dmemory.lo -MD -MP -MF .deps/dmemory.Tpo -c -o dmemory.lo dmemory.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT dmemory.lo -MD -MP -MF .deps/dmemory.Tpo -c dmemory.c -fPIC -DPIC -o .libs/dmemory.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT dmemory.lo -MD -MP -MF .deps/dmemory.Tpo -c dmemory.c -o dmemory.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -fPIC -DPIC -o .libs/error.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT extralib.lo -MD -MP -MF .deps/extralib.Tpo -c -o extralib.lo extralib.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT extralib.lo -MD -MP -MF .deps/extralib.Tpo -c extralib.c -fPIC -DPIC -o .libs/extralib.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT extralib.lo -MD -MP -MF .deps/extralib.Tpo -c extralib.c -o extralib.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -fPIC -DPIC -o .libs/file.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gaussgrid.lo -MD -MP -MF .deps/gaussgrid.Tpo -c -o gaussgrid.lo gaussgrid.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gaussgrid.lo -MD -MP -MF .deps/gaussgrid.Tpo -c gaussgrid.c -fPIC -DPIC -o .libs/gaussgrid.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gaussgrid.lo -MD -MP -MF .deps/gaussgrid.Tpo -c gaussgrid.c -o gaussgrid.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gribapi.lo -MD -MP -MF .deps/gribapi.Tpo -c -o gribapi.lo gribapi.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gribapi.lo -MD -MP -MF .deps/gribapi.Tpo -c gribapi.c -fPIC -DPIC -o .libs/gribapi.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT gribapi.lo -MD -MP -MF .deps/gribapi.Tpo -c gribapi.c -o gribapi.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT grid.lo -MD -MP -MF .deps/grid.Tpo -c -o grid.lo grid.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT grid.lo -MD -MP -MF .deps/grid.Tpo -c grid.c -fPIC -DPIC -o .libs/grid.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT grid.lo -MD -MP -MF .deps/grid.Tpo -c grid.c -o grid.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT ieglib.lo -MD -MP -MF .deps/ieglib.Tpo -c -o ieglib.lo ieglib.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT ieglib.lo -MD -MP -MF .deps/ieglib.Tpo -c ieglib.c -fPIC -DPIC -o .libs/ieglib.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT ieglib.lo -MD -MP -MF .deps/ieglib.Tpo -c ieglib.c -o ieglib.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT institution.lo -MD -MP -MF .deps/institution.Tpo -c -o institution.lo institution.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT institution.lo -MD -MP -MF .deps/institution.Tpo -c institution.c -fPIC -DPIC -o .libs/institution.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT institution.lo -MD -MP -MF .deps/institution.Tpo -c institution.c -o institution.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT model.lo -MD -MP -MF .deps/model.Tpo -c -o model.lo model.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -fPIC -DPIC -o .libs/model.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -o model.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT servicelib.lo -MD -MP -MF .deps/servicelib.Tpo -c -o servicelib.lo servicelib.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT servicelib.lo -MD -MP -MF .deps/servicelib.Tpo -c servicelib.c -fPIC -DPIC -o .libs/servicelib.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT servicelib.lo -MD -MP -MF .deps/servicelib.Tpo -c servicelib.c -o servicelib.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cdf.lo -MD -MP -MF .deps/stream_cdf.Tpo -c -o stream_cdf.lo stream_cdf.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cdf.lo -MD -MP -MF .deps/stream_cdf.Tpo -c stream_cdf.c -fPIC -DPIC -o .libs/stream_cdf.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cdf.lo -MD -MP -MF .deps/stream_cdf.Tpo -c stream_cdf.c -o stream_cdf.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cgribex.lo -MD -MP -MF .deps/stream_cgribex.Tpo -c -o stream_cgribex.lo stream_cgribex.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cgribex.lo -MD -MP -MF .deps/stream_cgribex.Tpo -c stream_cgribex.c -fPIC -DPIC -o .libs/stream_cgribex.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_cgribex.lo -MD -MP -MF .deps/stream_cgribex.Tpo -c stream_cgribex.c -o stream_cgribex.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ext.lo -MD -MP -MF .deps/stream_ext.Tpo -c -o stream_ext.lo stream_ext.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ext.lo -MD -MP -MF .deps/stream_ext.Tpo -c stream_ext.c -fPIC -DPIC -o .libs/stream_ext.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ext.lo -MD -MP -MF .deps/stream_ext.Tpo -c stream_ext.c -o stream_ext.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_grb.lo -MD -MP -MF .deps/stream_grb.Tpo -c -o stream_grb.lo stream_grb.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_grb.lo -MD -MP -MF .deps/stream_grb.Tpo -c stream_grb.c -fPIC -DPIC -o .libs/stream_grb.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_grb.lo -MD -MP -MF .deps/stream_grb.Tpo -c stream_grb.c -o stream_grb.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_gribapi.lo -MD -MP -MF .deps/stream_gribapi.Tpo -c stream_gribapi.c -fPIC -DPIC -o .libs/stream_gribapi.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_gribapi.lo -MD -MP -MF .deps/stream_gribapi.Tpo -c stream_gribapi.c -o stream_gribapi.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_history.lo -MD -MP -MF .deps/stream_history.Tpo -c -o stream_history.lo stream_history.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_history.lo -MD -MP -MF .deps/stream_history.Tpo -c stream_history.c -fPIC -DPIC -o .libs/stream_history.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_history.lo -MD -MP -MF .deps/stream_history.Tpo -c stream_history.c -o stream_history.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ieg.lo -MD -MP -MF .deps/stream_ieg.Tpo -c -o stream_ieg.lo stream_ieg.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ieg.lo -MD -MP -MF .deps/stream_ieg.Tpo -c stream_ieg.c -fPIC -DPIC -o .libs/stream_ieg.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_ieg.lo -MD -MP -MF .deps/stream_ieg.Tpo -c stream_ieg.c -o stream_ieg.o >/dev/null 2>&1
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mv -f .deps/stream_ieg.Tpo .deps/stream_ieg.Plo
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_int.lo -MD -MP -MF .deps/stream_int.Tpo -c stream_int.c -fPIC -DPIC -o .libs/stream_int.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_int.lo -MD -MP -MF .deps/stream_int.Tpo -c stream_int.c -o stream_int.o >/dev/null 2>&1
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mv -f .deps/stream_int.Tpo .deps/stream_int.Plo
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_record.lo -MD -MP -MF .deps/stream_record.Tpo -c -o stream_record.lo stream_record.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_record.lo -MD -MP -MF .deps/stream_record.Tpo -c stream_record.c -fPIC -DPIC -o .libs/stream_record.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_record.lo -MD -MP -MF .deps/stream_record.Tpo -c stream_record.c -o stream_record.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_srv.lo -MD -MP -MF .deps/stream_srv.Tpo -c stream_srv.c -fPIC -DPIC -o .libs/stream_srv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_var.lo -MD -MP -MF .deps/stream_var.Tpo -c stream_var.c -fPIC -DPIC -o .libs/stream_var.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream_var.lo -MD -MP -MF .deps/stream_var.Tpo -c stream_var.c -o stream_var.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT table.lo -MD -MP -MF .deps/table.Tpo -c -o table.lo table.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT table.lo -MD -MP -MF .deps/table.Tpo -c table.c -fPIC -DPIC -o .libs/table.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT table.lo -MD -MP -MF .deps/table.Tpo -c table.c -o table.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT taxis.lo -MD -MP -MF .deps/taxis.Tpo -c -o taxis.lo taxis.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT taxis.lo -MD -MP -MF .deps/taxis.Tpo -c taxis.c -fPIC -DPIC -o .libs/taxis.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT taxis.lo -MD -MP -MF .deps/taxis.Tpo -c taxis.c -o taxis.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT timebase.lo -MD -MP -MF .deps/timebase.Tpo -c -o timebase.lo timebase.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT timebase.lo -MD -MP -MF .deps/timebase.Tpo -c timebase.c -fPIC -DPIC -o .libs/timebase.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT timebase.lo -MD -MP -MF .deps/timebase.Tpo -c timebase.c -o timebase.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT tsteps.lo -MD -MP -MF .deps/tsteps.Tpo -c -o tsteps.lo tsteps.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT tsteps.lo -MD -MP -MF .deps/tsteps.Tpo -c tsteps.c -fPIC -DPIC -o .libs/tsteps.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT tsteps.lo -MD -MP -MF .deps/tsteps.Tpo -c tsteps.c -o tsteps.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo util.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.c -fPIC -DPIC -o .libs/util.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.c -o util.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT varscan.lo -MD -MP -MF .deps/varscan.Tpo -c -o varscan.lo varscan.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT varscan.lo -MD -MP -MF .deps/varscan.Tpo -c varscan.c -fPIC -DPIC -o .libs/varscan.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT varscan.lo -MD -MP -MF .deps/varscan.Tpo -c varscan.c -o varscan.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT version.lo -MD -MP -MF .deps/version.Tpo -c version.c -o version.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist.lo -MD -MP -MF .deps/vlist.Tpo -c -o vlist.lo vlist.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist.lo -MD -MP -MF .deps/vlist.Tpo -c vlist.c -fPIC -DPIC -o .libs/vlist.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist.lo -MD -MP -MF .deps/vlist.Tpo -c vlist.c -o vlist.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist_att.lo -MD -MP -MF .deps/vlist_att.Tpo -c -o vlist_att.lo vlist_att.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist_att.lo -MD -MP -MF .deps/vlist_att.Tpo -c vlist_att.c -fPIC -DPIC -o .libs/vlist_att.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist_att.lo -MD -MP -MF .deps/vlist_att.Tpo -c vlist_att.c -o vlist_att.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT vlist_var.lo -MD -MP -MF .deps/vlist_var.Tpo -c vlist_var.c -fPIC -DPIC -o .libs/vlist_var.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT zaxis.lo -MD -MP -MF .deps/zaxis.Tpo -c -o zaxis.lo zaxis.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT zaxis.lo -MD -MP -MF .deps/zaxis.Tpo -c zaxis.c -fPIC -DPIC -o .libs/zaxis.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT zaxis.lo -MD -MP -MF .deps/zaxis.Tpo -c zaxis.c -o zaxis.o >/dev/null 2>&1
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c stream.c -fPIC -DPIC -o .libs/stream.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o .libs/swap.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -o swap.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -pthread -L/usr/local/netcdf-4.1.2/lib -o libcdi.la basetime.lo binary.lo calendar.lo cdf.lo cdf_int.lo cdi_error.lo cdi_util.lo cdiFortran.lo cgribexlib.lo dmemory.lo error.lo extralib.lo file.lo gaussgrid.lo gribapi.lo grid.lo ieglib.lo institution.lo model.lo servicelib.lo stream_cdf.lo stream_cgribex.lo stream_ext.lo stream_grb.lo stream_gribapi.lo stream_history.lo stream_ieg.lo stream_int.lo stream_record.lo stream_srv.lo stream_var.lo table.lo taxis.lo timebase.lo tsteps.lo util.lo varscan.lo version.lo vlist.lo vlist_att.lo vlist_var.lo zaxis.lo stream.lo swap.lo -lnetcdf -lz -lm
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libtool: link: ar cru .libs/libcdi.a .libs/basetime.o .libs/binary.o .libs/calendar.o .libs/cdf.o .libs/cdf_int.o .libs/cdi_error.o .libs/cdi_util.o .libs/cdiFortran.o .libs/cgribexlib.o .libs/dmemory.o .libs/error.o .libs/extralib.o .libs/file.o .libs/gaussgrid.o .libs/gribapi.o .libs/grid.o .libs/ieglib.o .libs/institution.o .libs/model.o .libs/servicelib.o .libs/stream_cdf.o .libs/stream_cgribex.o .libs/stream_ext.o .libs/stream_grb.o .libs/stream_gribapi.o .libs/stream_history.o .libs/stream_ieg.o .libs/stream_int.o .libs/stream_record.o .libs/stream_srv.o .libs/stream_var.o .libs/table.o .libs/taxis.o .libs/timebase.o .libs/tsteps.o .libs/util.o .libs/varscan.o .libs/version.o .libs/vlist.o .libs/vlist_att.o .libs/vlist_var.o .libs/zaxis.o .libs/stream.o .libs/swap.o
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libtool: link: ranlib .libs/libcdi.a
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libtool: link: ( cd ".libs" && rm -f "libcdi.la" && ln -s "../libcdi.la" "libcdi.la" )
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make[3]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi/src'
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make[2]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi/src'
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Making all in interfaces
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make[2]: Entering directory `/home/ahmed/cdo-1.5.0/libcdi/interfaces'
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make[2]: Nothing to be done for `all'.
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make[2]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi/interfaces'
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Making all in app
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make[2]: Entering directory `/home/ahmed/cdo-1.5.0/libcdi/app'
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gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -I/usr/local/netcdf-4.1.2/include -g -O2 -pthread -MT cdi.o -MD -MP -MF .deps/cdi.Tpo -c -o cdi.o cdi.c
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libtool: link: gcc -std=gnu99 -g -O2 -pthread -o cdi cdi.o -L/usr/local/netcdf-4.1.2/lib ../src/.libs/libcdi.a /usr/local/netcdf-4.1.2/lib/libnetcdf.so -lcurl -lz -lm -pthread -Wl,-rpath -Wl,/usr/local/netcdf-4.1.2/lib -Wl,-rpath -Wl,/usr/local/netcdf-4.1.2/lib
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../src/.libs/libcdi.a(stream_cdf.o): In function `cdfDefVarDeflate':
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/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:644: undefined reference to `nc_def_var_deflate'
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../src/.libs/libcdi.a(stream_cdf.o): In function `cdfDefVar':
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/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:2730: undefined reference to `nc_def_var_chunking'
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../src/.libs/libcdi.a(stream_cdf.o): In function `scanVarAttributes':
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/home/ahmed/cdo-1.5.0/libcdi/src/stream_cdf.c:4216: undefined reference to `nc_inq_var_deflate'
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collect2: ld returned 1 exit status
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make[2]: *** [cdi] Error 1
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make[2]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi/app'
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make[1]: *** [all-recursive] Error 1
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make[1]: Leaving directory `/home/ahmed/cdo-1.5.0/libcdi'
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make: *** [all-recursive] Error 1
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