Project

General

Profile

Compilation error in pointsearch_reg2d.cc » configure.out.txt

./configure output - Richard Kovacs, 2025-08-22 16:09

 
# ./configure --with-netcdf=yes


checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
configure: setting up libtool
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ranlib... ranlib
checking for archiver @FILE support... @
checking for strip... strip
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/param.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for a Python interpreter with version >= 3.6... python
checking for python... /usr/bin/python
checking for python version... 3.11
checking for python platform... linux
checking for GNU default python prefix... ${prefix}
checking for GNU default python exec_prefix... ${exec_prefix}
checking for python script directory (pythondir)... ${PYTHON_PREFIX}/lib/python3.11/site-packages
checking for python extension module directory (pyexecdir)... ${PYTHON_EXEC_PREFIX}/lib/python3.11/site-packages
checking for bash... /bin/bash
checking for gcc... (cached) gcc
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for g77... g77
checking whether the compiler supports GNU Fortran 77... yes
checking whether g77 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g77 option to produce PIC... -fPIC
checking if g77 PIC flag -fPIC works... yes
checking if g77 static flag -static works... yes
checking if g77 supports -c -o file.o... yes
checking if g77 supports -c -o file.o... (cached) yes
checking whether the g77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for C/C++ restrict keyword... __restrict__
checking whether g++ supports C++20 features by default... no
checking whether g++ supports C++20 features with -std=gnu++20... yes
checking for gcc option to support OpenMP... -fopenmp
checking for ar... (cached) ar
checking for cpp... cpp
checking for ld... /usr/bin/ld
checking for nm... /usr/bin/nm -B
checking for ar... (cached) ar
checking for as... as
checking for dlltool... false
checking for objdump... (cached) objdump
checking for strip... (cached) strip
checking for ranlib... (cached) ranlib
checking for gcc option to enable large file support... -D_FILE_OFFSET_BITS=64
checking for getpagesize... yes
checking for working mmap... yes
checking for struct stat.st_blksize... yes
checking for mallinfo... yes
checking for backtrace... yes
checking for getrlimit... yes
checking for fenv_t.__control... no
checking for fenv_t.__mxcsr... no
checking C preprocessor flags for Fortran calling convention cfortran.h... -DgFortran (probed)
checking if C externals constructed with cfortran.h work... yes
checking how to run the C preprocessor... cpp
checking for egrep -e... (cached) /usr/bin/grep -E
checking for gcc options needed to detect all undeclared functions... none needed
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
CC:gcc CFLAGS:-g -O2 -fopenmp -pthread LIBS:-lpthread
checking for szlib library... suppressed
checking for hdf5 library... suppressed
checking for netcdf.h... yes
checking for netcdf_meta.h... yes
checking for library containing nc_open... -lnetcdf
checking for library containing H5TS_mutex_lock... no
checking for library containing H5dont_atexit... no
checking for the UDUNITS2 library... suppressed
checking for uuid/uuid.h extra include path... not found
checking for uuid.h extra include path... not found
checking for uuid.h extra include path... not found
checking for the CMOR library... suppressed
checking for the ECCODES library... suppressed
checking for GRIB support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for FFTW3 support... checking for the PROJ library... suppressed
checking for the CURL library... suppressed
checking for MAGICS library... suppressed
checking for XML2 library... suppressed
checking for build a separate CDI library and link CDO to it... no
checking for building an additional static CDO binary... no
checking for HIRLAM extensions... no
checking for pthread_join using gcc -pthread -lpthread... yes
checking whether gcc is Clang... (cached) no
checking for joinable pthread attribute... (cached) PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... (cached) no
checking for PTHREAD_PRIO_INHERIT... (cached) yes
CC:gcc CFLAGS:-g -O2 -fopenmp -pthread -pthread LIBS:-lpthread -lnetcdf -lpthread
checking for fdb5 library... suppressed
checking for szlib library... suppressed
checking for netcdf.h... (cached) yes
checking for library containing nc_open... (cached) -lnetcdf
checking for nc-config... nc-config
checking netcdf's OpenDAP support... yes
checking netcdf's Zarr support... yes
checking netcdf's nc2 support... yes
checking netcdf's nc4 support... yes
checking netcdf's nc4/hdf5 support... yes
checking whether nc_inq_var_filter is declared... yes
checking for library containing nc_inq_var_filter_ids... none required
checking whether nc_inq_var_filter_ids is declared... yes
checking for library containing ncaux_h5filterspec_parselist... none required
checking whether ncaux_h5filterspec_parselist is declared... yes
checking netcdf's nc4/szlib support... no
checking for library containing H5TS_mutex_lock... (cached) no
checking for library containing H5get_libversion... no
checking for the ECCODES library... suppressed
checking for GRIB support... yes
checking for ACROSS support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for HIRLAM extensions... no
checking for gawk... (cached) mawk
checking that generated files are newer than configure... done
=== configuring in libcdi (/home/system/install/met/cdo/cdo-2.5.3/libcdi)
configure: running /bin/bash ./configure '--prefix=/usr/local' --disable-option-checking '--with-netcdf=yes' 'CPPFLAGS=-DCDI_SIZE_TYPE=size_t' '--srcdir=.' --cache-file=/dev/null
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... gcc3
checking For conformance to POSIX.1-2001.... yes
checking for C/C++ restrict keyword... __restrict__
configure: setting up libtool
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ranlib... ranlib
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/param.h... yes
checking for dlfcn.h... yes
checking any compiler has problems building shared objects... no
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for the compiler family... other
configure: creating ./config.lt
config.lt: creating libtool
checking whether libtool can link C programs... yes
checking whether byte ordering is bigendian... no
checking for gcc option to enable large file support... -D_FILE_OFFSET_BITS=64
checking for getpagesize... yes
checking for working mmap... yes
checking for struct stat.st_blksize... yes
checking for malloc.h... yes
checking for sys/time.h... yes
checking for execinfo.h... yes
checking size parameter type for backtrace()... int
checking for library containing backtrace... none required
checking for mallinfo... yes
checking for pwrite... yes
checking for timegm... yes
checking for getline... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking for uuid/uuid.h extra include path... not found
checking for uuid.h extra include path... not found
checking for uuid.h extra include path... not found
checking whether isnan is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking whether PAGESIZE is declared... no
checking whether PAGE_SIZE is declared... no
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_PAGESIZE is declared... yes
checking whether _PC_REC_XFER_ALIGN is declared... yes
checking whether POSIX_REC_XFER_ALIGN is declared... no
checking for library containing floor... -lm
checking whether __builtin_ctz is declared... yes
checking how to run the C preprocessor... gcc -E
checking for egrep -e... (cached) /usr/bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
CC:gcc CFLAGS:-g -O2 -pthread LIBS:-lpthread -lm
checking for fdb5 library... suppressed
checking for szlib library... suppressed
checking for netcdf.h... yes
checking for library containing nc_open... -lnetcdf
checking for nc-config... nc-config
checking netcdf's OpenDAP support... yes
checking netcdf's Zarr support... yes
checking netcdf's nc2 support... yes
checking netcdf's nc4 support... yes
checking netcdf's nc4/hdf5 support... yes
checking whether nc_inq_var_filter is declared... yes
checking for library containing nc_inq_var_filter_ids... none required
checking whether nc_inq_var_filter_ids is declared... yes
checking for library containing ncaux_h5filterspec_parselist... none required
checking whether ncaux_h5filterspec_parselist is declared... yes
checking netcdf's nc4/szlib support... no
checking for library containing H5TS_mutex_lock... no
checking for library containing H5get_libversion... no
checking for the ECCODES library... suppressed
checking for GRIB support... yes
checking for ACROSS support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for HIRLAM extensions... no
checking for grib_get_length... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating app/Makefile
config.status: creating cdi.settings
config.status: creating examples/Makefile
config.status: creating examples/pio/Makefile
config.status: creating interfaces/Makefile
config.status: creating interfaces/python/Makefile
config.status: creating src/Makefile
config.status: creating src/cmake/cdi/cdi-config-version.cmake
config.status: creating src/cmake/cdi/cdi-config.cmake
config.status: creating src/pkgconfig/cdi.pc
config.status: creating src/pkgconfig/cdi_f2003.pc
config.status: creating src/pkgconfig/cdipio.pc
config.status: creating tests/Makefile
config.status: creating tests/test_cksum_base
config.status: creating interfaces/test_cpp_nc.run
config.status: creating interfaces/test_python_grb.run
config.status: creating interfaces/test_python_nc.run
config.status: creating interfaces/test_ruby_grb.run
config.status: creating interfaces/test_ruby_nc.run
config.status: creating tables/gen_tableheaderfile
config.status: creating tests/pio_cksum_asynch.run
config.status: creating tests/pio_cksum_fpguard.run
config.status: creating tests/pio_cksum_grb2.run
config.status: creating tests/pio_cksum_mpi_fw_at_all.run
config.status: creating tests/pio_cksum_mpi_fw_at_reblock.run
config.status: creating tests/pio_cksum_mpi_fw_ordered.run
config.status: creating tests/pio_cksum_mpinonb.run
config.status: creating tests/pio_cksum_nc.run
config.status: creating tests/pio_cksum_nc2.run
config.status: creating tests/pio_cksum_nc4.run
config.status: creating tests/pio_cksum_writer.run
config.status: creating tests/pio_write.parallel.run
config.status: creating tests/pio_write.run
config.status: creating tests/pio_write_deco2d.parallel.run
config.status: creating tests/pio_write_deco2d.run
config.status: creating tests/pio_write_dist_array.run
config.status: creating tests/test_byteswap.run
config.status: creating tests/test_cdf_const.run
config.status: creating tests/test_cdf_transformation.run
config.status: creating tests/test_cksum_ext.run
config.status: creating tests/test_cksum_grb.run
config.status: creating tests/test_cksum_grb2.run
config.status: creating tests/test_cksum_ieg.run
config.status: creating tests/test_cksum_nc.run
config.status: creating tests/test_cksum_nc2.run
config.status: creating tests/test_cksum_nc4.run
config.status: creating tests/test_cksum_nc_chunk.run
config.status: creating tests/test_cksum_srv.run
config.status: creating tests/test_f2003.run
config.status: creating tests/test_grib.run
config.status: creating tests/test_resource_copy.parallel.run
config.status: creating tests/test_resource_copy.run
config.status: creating tests/test_table.run
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: CDI is configured with the following options:
{
"build" : {
"tools" : {
"CC" : "gcc",
"CPP" : "gcc -E",
"CPPFLAGS" : "-DCDI_SIZE_TYPE=size_t",
"CFLAGS" : "-g -O2 -pthread",
"LDFLAGS" : "",
"LIBS" : "-lnetcdf -lpthread -lm ",
"FC" : "no",
"F77" : "no",
"FCFLAGS" : "",
"LD" : "/usr/bin/ld",
"NM" : "/usr/bin/nm -B",
"AR" : "ar",
"DLLTOOL" : "false",
"OBJDUMP" : "objdump",
"STRIP" : "strip",
"RANLIB" : "ranlib",
"INSTALL" : "/usr/bin/install -c"
},
"libraries" : {
"threads" : {
"lib" : "",
"include" : ""
},
"mpi" : {
"libs" : "",
"cflags" : "",
"fclibs" : "",
"fcflags" : ""
},
"fdb5" : {
"lib" : "",
"include" : ""
},
"szlib" : {
"lib" : "",
"include" : ""
},
"netcdf" : {
"lib" : " -lnetcdf",
"include" : ""
},
"eccodes" : {
"lib" : "",
"include" : ""
}
},
"platform" : {
"SYSTEM_TYPE" : "i686-pc-linux-gnu"
}
},
"features" : {
"enable_cdi_lib" : false,
"grib" : "yes",
"cgribex" : "yes",
"service" : "yes",
"extra" : "yes",
"ieg" : "yes",
"enable_mpi" : false,
"parallel_nc4" : 0,
"enable_python" : false,
"enable_ruby" : false,
"across" : "yes"
}
}
configure:

Configuration completed.

You can now run 'make' to compile the CDI package and 'make install' to install it afterwards.

configure: creating ./config.status
config.status: creating test/cdoTestFunctions.test
config.status: creating test/pytest/cdoTest.py
config.status: creating test/pytest/CDO_test.py.test
config.status: creating test/pytest/Adisit.py.test
config.status: creating test/pytest/Afterburner.py.test
config.status: creating test/pytest/Arith.py.test
config.status: creating test/pytest/Arithc.py.test
config.status: creating test/pytest/Arith_extra.py.test
config.status: creating test/pytest/Cat.py.test
config.status: creating test/pytest/Change.py.test
config.status: creating test/pytest/CMOR.py.test
config.status: creating test/pytest/Collgrid.py.test
config.status: creating test/pytest/Comp.py.test
config.status: creating test/pytest/Compc.py.test
config.status: creating test/pytest/Cond.py.test
config.status: creating test/pytest/Cond2.py.test
config.status: creating test/pytest/Condc.py.test
config.status: creating test/pytest/Consecstat.py.test
config.status: creating test/pytest/Copy_netcdf.py.test
config.status: creating test/pytest/Dayarith.py.test
config.status: creating test/pytest/Detrend.py.test
config.status: creating test/pytest/Eca.py.test
config.status: creating test/pytest/Enspctl.py.test
config.status: creating test/pytest/Ensstat.py.test
config.status: creating test/pytest/Ensstat2.py.test
config.status: creating test/pytest/EOFcoeff.py.test
config.status: creating test/pytest/EOF.py.test
config.status: creating test/pytest/Etccdi.py.test
config.status: creating test/pytest/Etccdi2.py.test
config.status: creating test/pytest/Expr.py.test
config.status: creating test/pytest/File.py.test
config.status: creating test/pytest/Filter.py.test
config.status: creating test/pytest/Fldpctl.py.test
config.status: creating test/pytest/Fldstat2.py.test
config.status: creating test/pytest/Fldstat.py.test
config.status: creating test/pytest/Genweights.py.test
config.status: creating test/pytest/Gradsdes.py.test
config.status: creating test/pytest/Gridarea.py.test
config.status: creating test/pytest/Gridboxstat.py.test
config.status: creating test/pytest/Importcmsaf.py.test
config.status: creating test/pytest/Intgrid.py.test
config.status: creating test/pytest/Inttime.py.test
config.status: creating test/pytest/Intyear.py.test
config.status: creating test/pytest/Isosurface.py.test
config.status: creating test/pytest/Maggraph.py.test
config.status: creating test/pytest/Magplot.py.test
config.status: creating test/pytest/Magvector.py.test
config.status: creating test/pytest/MapReduce.py.test
config.status: creating test/pytest/Maskregion.py.test
config.status: creating test/pytest/Math.py.test
config.status: creating test/pytest/Merge.py.test
config.status: creating test/pytest/Mergetime.py.test
config.status: creating test/pytest/Merstat.py.test
config.status: creating test/pytest/Monarith.py.test
config.status: creating test/pytest/Multiyearstat.py.test
config.status: creating test/pytest/Ninfo.py.test
config.status: creating test/pytest/Pack.py.test
config.status: creating test/pytest/Percentile.py.test
config.status: creating test/pytest/Read_grib.py.test
config.status: creating test/pytest/Read_netcdf.py.test
config.status: creating test/pytest/Remap.py.test
config.status: creating test/pytest/Remap_noweights.py.test
config.status: creating test/pytest/Remap2.py.test
config.status: creating test/pytest/Remap3.py.test
config.status: creating test/pytest/Remap4.py.test
config.status: creating test/pytest/Remap_global_5_grid.py.test
config.status: creating test/pytest/Remap_gme.py.test
config.status: creating test/pytest/Remap_healpix.py.test
config.status: creating test/pytest/Remap_small.py.test
config.status: creating test/pytest/Remap_knn.py.test
config.status: creating test/pytest/Remap_extra.py.test
config.status: creating test/pytest/Remap_extra_file.py.test
config.status: creating test/pytest/Remap_extra_file2.py.test
config.status: creating test/pytest/Remapeta.py.test
config.status: creating test/pytest/Remapstat.py.test
config.status: creating test/pytest/Runpctl.py.test
config.status: creating test/pytest/Seasstat.py.test
config.status: creating test/pytest/Runstat.py.test
config.status: creating test/pytest/Select.py.test
config.status: creating test/pytest/Selregion.py.test
config.status: creating test/pytest/Setmiss.py.test
config.status: creating test/pytest/Smooth.py.test
config.status: creating test/pytest/Spectral.py.test
config.status: creating test/pytest/Split.py.test
config.status: creating test/pytest/Splittime.py.test
config.status: creating test/pytest/threads.py.test
config.status: creating test/pytest/Timfillmiss.py.test
config.status: creating test/pytest/Timpctl.py.test
config.status: creating test/pytest/Timselpctl.py.test
config.status: creating test/pytest/Timselstat.py.test
config.status: creating test/pytest/Timstat2.py.test
config.status: creating test/pytest/Timstat3.py.test
config.status: creating test/pytest/Timstat.py.test
config.status: creating test/pytest/tsformat.py.test
config.status: creating test/pytest/userInput.py.test
config.status: creating test/pytest/Varsstat.py.test
config.status: creating test/pytest/Vertfillmiss.py.test
config.status: creating test/pytest/Vertint.py.test
config.status: creating test/pytest/Vertstat.py.test
config.status: creating test/pytest/wildcard.py.test
config.status: creating test/pytest/cdoReturnValues.py.test
config.status: creating test/pytest/Wind.py.test
config.status: creating test/pytest/Ydayarith.py.test
config.status: creating test/pytest/Ydrunpctl.py.test
config.status: creating test/pytest/Ydrunstat.py.test
config.status: creating test/pytest/Yeararith.py.test
config.status: creating test/pytest/Yearmonstat.py.test
config.status: creating test/pytest/Ymonarith.py.test
config.status: creating test/pytest/Zonstat.py.test
config.status: creating test/pytest/Vargen.py.test
config.status: creating test/executeOnly/Splitsel.test
config.status: creating contrib/Makefile
config.status: creating cdo.spec
config.status: creating cdo.settings
config.status: creating Makefile
config.status: creating src/lib/ncl/Makefile
config.status: creating src/lib/yac/src/Makefile
config.status: creating src/lib/gradsdes/Makefile
config.status: creating src/lib/healpix/Makefile
config.status: creating src/Makefile
config.status: creating src/lib/yac/clapack/Makefile
config.status: creating test/data/Makefile
config.status: creating test/executeOnly/Makefile
config.status: creating test/pytest/Makefile
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: CDO is configured with the following options:
{
"build" : {
"tools" : {
"CXX" : "g++ -std=gnu++20",
"CC" : "gcc",
"CPP" : "cpp",
"CPPFLAGS" : "-DgFortran -DCDI_SIZE_TYPE=size_t",
"CXXFLAGS" : "-g -O2 -fopenmp -pthread",
"CFLAGS" : "-g -O2 -fopenmp -pthread -pthread",
"F77" : "g77",
"FFLAGS" : "-g -O2",
"LDFLAGS" : "",
"LIBS" : "-lnetcdf -lpthread -lnetcdf -lpthread ",
"FCFLAGS" : "@FCFLAGS@",
"INCLUDES" : "@INCLUDES@",
"LD" : "/usr/bin/ld",
"NM" : "/usr/bin/nm -B",
"AR" : "ar",
"AS" : "as",
"DLLTOOL" : "false",
"OBJDUMP" : "objdump",
"STRIP" : "strip",
"RANLIB" : "ranlib",
"INSTALL" : "/usr/bin/install -c",
},
"libraries" : {
"threads" : {
"lib" : "",
"include" : ""
},
"szlib" : {
"lib" : "",
"include" : ""
},
"hdf5" : {
"lib" : "",
"include" : ""
},
"netcdf" : {
"lib" : " -lnetcdf",
"include" : ""
},
"udunits2" : {
"lib" : "",
"include" : ""
},
"proj" : {
"lib" : "",
"include" : ""
},
"magics" : {
"lib" : "",
"include" : ""
}
},
"platform" : {
"SYSTEM_TYPE" : "i686-pc-linux-gnu"
},
},
"features" : {
"enable_cdi_lib" : false,
"enable_fortran" : true,
"fortran_works" : "yes",
}
}
configure:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.
(1-1/2)