CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.1, which was

generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --prefix=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-fftw3 --with-proj=/usr/local --with-udunits2=/usr/local --with-xml2=/usr --with-threads=/usr --with-grib_api=/usr/local --with-curl=/usr

## --------- ##

## Platform. ##

## --------- ##

hostname = grid-master.hydromech.tuc.gr

uname -m = x86_64

uname -r = 3.10.0-693.5.2.el7.x86_64

uname -s = Linux

uname -v = #1 SMP Fri Oct 20 20:32:50 UTC 2017

/usr/bin/uname -p = x86_64

/bin/uname -X = unknown

/bin/arch = x86_64

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /usr/local/bin

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/bin

PATH: /usr/local/sbin

PATH: /usr/sbin

PATH: /usr/lib64/openmpi/bin

PATH: /etc/fcm/bin

PATH: /usr/local/bin

PATH: /usr/lib64/openmpi/bin

PATH: /etc/fcm/bin

PATH: /usr/local/bin

PATH: /home/hydro/.local/bin

PATH: /home/hydro/bin

PATH: /usr/lib64/openmpi/bin

PATH: /etc/fcm/bin

PATH: /usr/local/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2612: checking build system type

configure:2626: result: x86_64-unknown-linux-gnu

configure:2646: checking host system type

configure:2659: result: x86_64-unknown-linux-gnu

configure:2698: checking for a BSD-compatible install

configure:2766: result: /usr/bin/install -c

configure:2777: checking whether build environment is sane

configure:2832: result: yes

configure:2983: checking for a thread-safe mkdir -p

configure:3022: result: /usr/bin/mkdir -p

configure:3029: checking for gawk

configure:3045: found /usr/bin/gawk

configure:3056: result: gawk

configure:3067: checking whether make sets $(MAKE)

configure:3089: result: yes

configure:3118: checking whether make supports nested variables

configure:3135: result: yes

configure:3263: checking whether to enable maintainer-specific portions of Makefiles

configure:3272: result: no

configure:3299: checking for style of include used by make

configure:3327: result: GNU

configure:3398: checking for gcc

configure:3425: result: mpicc

configure:3654: checking for C compiler version

configure:3663: mpicc --version >&5

gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16)

Copyright (C) 2015 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3674: $? = 0

configure:3663: mpicc -v >&5

Using built-in specs.

COLLECT_GCC=/usr/bin/gcc

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.8.5 20150623 (Red Hat 4.8.5-16) (GCC)

configure:3674: $? = 0

configure:3663: mpicc -V >&5

gcc: error: unrecognized command line option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:3674: $? = 4

configure:3663: mpicc -qversion >&5

gcc: error: unrecognized command line option '-qversion'

gcc: fatal error: no input files

compilation terminated.

configure:3674: $? = 4

configure:3694: checking whether the C compiler works

configure:3716: mpicc -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:3720: $? = 0

configure:3768: result: yes

configure:3771: checking for C compiler default output file name

configure:3773: result: a.out

configure:3779: checking for suffix of executables

configure:3786: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:3790: $? = 0

configure:3812: result:

configure:3834: checking whether we are cross compiling

configure:3842: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:3846: $? = 0

configure:3853: ./conftest

configure:3857: $? = 0

configure:3872: result: no

configure:3877: checking for suffix of object files

configure:3899: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:3903: $? = 0

configure:3924: result: o

configure:3928: checking whether we are using the GNU C compiler

configure:3947: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:3947: $? = 0

configure:3956: result: yes

configure:3965: checking whether mpicc accepts -g

configure:3985: mpicc -c -g -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:3985: $? = 0

configure:4026: result: yes

configure:4043: checking for mpicc option to accept ISO C89

configure:4107: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:4107: $? = 0

configure:4120: result: none needed

configure:4145: checking whether mpicc understands -c and -o together

configure:4167: mpicc -c conftest.c -o conftest2.o

configure:4170: $? = 0

configure:4167: mpicc -c conftest.c -o conftest2.o

configure:4170: $? = 0

configure:4182: result: yes

configure:4201: checking dependency style of mpicc

configure:4312: result: gcc3

configure:4377: checking for ar

configure:4393: found /usr/bin/ar

configure:4404: result: ar

configure:4430: checking the archiver (ar) interface

configure:4446: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:4446: $? = 0

configure:4448: ar cru libconftest.a conftest.o >&5

configure:4451: $? = 0

configure:4479: result: ar

configure:4500: setting up libtool

configure:4548: checking how to print strings

configure:4575: result: printf

configure:4596: checking for a sed that does not truncate output

configure:4660: result: /usr/bin/sed

configure:4678: checking for grep that handles long lines and -e

configure:4736: result: /usr/bin/grep

configure:4741: checking for egrep

configure:4803: result: /usr/bin/grep -E

configure:4808: checking for fgrep

configure:4870: result: /usr/bin/grep -F

configure:4905: checking for ld used by mpicc

configure:4972: result: /usr/bin/ld

configure:4979: checking if the linker (/usr/bin/ld) is GNU ld

configure:4994: result: yes

configure:5006: checking for BSD- or MS-compatible name lister (nm)

configure:5055: result: /usr/bin/nm -B

configure:5185: checking the name lister (/usr/bin/nm -B) interface

configure:5192: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:5195: /usr/bin/nm -B "conftest.o"

configure:5198: output

0000000000000000 B some_variable

configure:5205: result: BSD nm

configure:5208: checking whether ln -s works

configure:5212: result: yes

configure:5220: checking the maximum length of command line arguments

configure:5350: result: 1572864

configure:5367: checking whether the shell understands some XSI constructs

configure:5377: result: yes

configure:5381: checking whether the shell understands "+="

configure:5387: result: yes

configure:5422: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format

configure:5462: result: func_convert_file_noop

configure:5469: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format

configure:5489: result: func_convert_file_noop

configure:5496: checking for /usr/bin/ld option to reload object files

configure:5503: result: -r

configure:5577: checking for objdump

configure:5593: found /usr/bin/objdump

configure:5604: result: objdump

configure:5636: checking how to recognize dependent libraries

configure:5838: result: pass_all

configure:5923: checking for dlltool

configure:5953: result: no

configure:5983: checking how to associate runtime and link libraries

configure:6010: result: printf %s\n

configure:6134: checking for archiver @FILE support

configure:6151: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:6151: $? = 0

configure:6154: ar cru libconftest.a @conftest.lst >&5

configure:6157: $? = 0

configure:6162: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:6165: $? = 1

configure:6177: result: @

configure:6235: checking for strip

configure:6251: found /usr/bin/strip

configure:6262: result: strip

configure:6334: checking for ranlib

configure:6350: found /usr/bin/ranlib

configure:6361: result: ranlib

configure:6463: checking command to parse /usr/bin/nm -B output from mpicc object

configure:6583: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:6586: $? = 0

configure:6590: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6593: $? = 0

configure:6659: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c conftstm.o >&5

configure:6662: $? = 0

configure:6700: result: ok

configure:6737: checking for sysroot

configure:6767: result: no

configure:6844: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:6847: $? = 0

configure:7023: checking for mt

configure:7053: result: no

configure:7073: checking if : is a manifest tool

configure:7079: : '-?'

configure:7087: result: no

configure:7729: checking how to run the C preprocessor

configure:7760: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:7760: $? = 0

configure:7774: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:7774: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7799: result: mpicc -E

configure:7819: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:7819: $? = 0

configure:7833: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:7833: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7862: checking for ANSI C header files

configure:7882: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7882: $? = 0

configure:7955: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:7955: $? = 0

configure:7955: ./conftest

configure:7955: $? = 0

configure:7966: result: yes

configure:7979: checking for sys/types.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for sys/stat.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for stdlib.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for string.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for memory.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for strings.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for inttypes.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for stdint.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7979: checking for unistd.h

configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7979: $? = 0

configure:7979: result: yes

configure:7993: checking for dlfcn.h

configure:7993: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:7993: $? = 0

configure:7993: result: yes

configure:8199: checking for objdir

configure:8214: result: .libs

configure:8485: checking if mpicc supports -fno-rtti -fno-exceptions

configure:8503: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]

configure:8507: $? = 0

configure:8520: result: no

configure:8847: checking for mpicc option to produce PIC

configure:8854: result: -fPIC -DPIC

configure:8862: checking if mpicc PIC flag -fPIC -DPIC works

configure:8880: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fPIC -DPIC -DPIC conftest.c >&5

configure:8884: $? = 0

configure:8897: result: yes

configure:8926: checking if mpicc static flag -static works

configure:8954: result: no

configure:8969: checking if mpicc supports -c -o file.o

configure:8990: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -o out/conftest2.o conftest.c >&5

configure:8994: $? = 0

configure:9016: result: yes

configure:9024: checking if mpicc supports -c -o file.o

configure:9071: result: yes

configure:9104: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:10257: result: yes

configure:10294: checking whether -lc should be explicitly linked in

configure:10302: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:10305: $? = 0

configure:10320: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1

configure:10323: $? = 0

configure:10337: result: no

configure:10497: checking dynamic linker characteristics

configure:11008: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -Wl,-rpath -Wl,/foo conftest.c >&5

configure:11008: $? = 0

configure:11230: result: GNU/Linux ld.so

configure:11337: checking how to hardcode library paths into programs

configure:11362: result: immediate

configure:11902: checking whether stripping libraries is possible

configure:11907: result: yes

configure:11942: checking if libtool supports shared libraries

configure:11944: result: yes

configure:11947: checking whether to build shared libraries

configure:11968: result: yes

configure:11971: checking whether to build static libraries

configure:11975: result: yes

configure:12060: checking for bash

configure:12090: result: /bin/sh

configure:12157: checking for gcc

configure:12184: result: mpicc

configure:12249: checking for g++

configure:12276: result: mpicxx

configure:12298: checking for mpicc option to accept ISO C99

configure:12447: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

conftest.c:74:29: error: expected ';', ',' or ')' before 'text'

test_restrict (ccp restrict text)

^

conftest.c: In function 'main':

conftest.c:128:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'

char *restrict newvar = "Another string";

^

conftest.c:128:18: error: 'newvar' undeclared (first use in this function)

conftest.c:128:18: note: each undeclared identifier is reported only once for each function it appears in

conftest.c:138:3: error: 'for' loop initial declarations are only allowed in C99 mode

for (int i = 0; i < ia->datasize; ++i)

^

conftest.c:138:3: note: use option -std=c99 or -std=gnu99 to compile your code

configure:12447: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <stdarg.h>

| #include <stdbool.h>

| #include <stdlib.h>

| #include <wchar.h>

| #include <stdio.h>

|

| // Check varargs macros. These examples are taken from C99 6.10.3.5.

| #define debug(...) fprintf (stderr, __VA_ARGS__)

| #define showlist(...) puts (#__VA_ARGS__)

| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))

| static void

| test_varargs_macros (void)

| {

| int x = 1234;

| int y = 5678;

| debug ("Flag");

| debug ("X = %d\n", x);

| showlist (The first, second, and third items.);

| report (x>y, "x is %d but y is %d", x, y);

| }

|

| // Check long long types.

| #define BIG64 18446744073709551615ull

| #define BIG32 4294967295ul

| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)

| #if !BIG_OK

| your preprocessor is broken;

| #endif

| #if BIG_OK

| #else

| your preprocessor is broken;

| #endif

| static long long int bignum = -9223372036854775807LL;

| static unsigned long long int ubignum = BIG64;

|

| struct incomplete_array

| {

| int datasize;

| double data[];

| };

|

| struct named_init {

| int number;

| const wchar_t *name;

| double average;

| };

|

| typedef const char *ccp;

|

| static inline int

| test_restrict (ccp restrict text)

| {

| // See if C++-style comments work.

| // Iterate through items via the restricted pointer.

| // Also check for declarations in for loops.

| for (unsigned int i = 0; *(text+i) != '\0'; ++i)

| continue;

| return 0;

| }

|

| // Check varargs and va_copy.

| static void

| test_varargs (const char *format, ...)

| {

| va_list args;

| va_start (args, format);

| va_list args_copy;

| va_copy (args_copy, args);

|

| const char *str;

| int number;

| float fnumber;

|

| while (*format)

| {

| switch (*format++)

| {

| case 's': // string

| str = va_arg (args_copy, const char *);

| break;

| case 'd': // int

| number = va_arg (args_copy, int);

| break;

| case 'f': // float

| fnumber = va_arg (args_copy, double);

| break;

| default:

| break;

| }

| }

| va_end (args_copy);

| va_end (args);

| }

|

| int

| main ()

| {

|

| // Check bool.

| _Bool success = false;

|

| // Check restrict.

| if (test_restrict ("String literal") == 0)

| success = true;

| char *restrict newvar = "Another string";

|

| // Check varargs.

| test_varargs ("s, d' f .", "string", 65, 34.234);

| test_varargs_macros ();

|

| // Check flexible array members.

| struct incomplete_array *ia =

| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));

| ia->datasize = 10;

| for (int i = 0; i < ia->datasize; ++i)

| ia->data[i] = i * 1.234;

|

| // Check named initializers.

| struct named_init ni = {

| .number = 34,

| .name = L"Test wide string",

| .average = 543.34343,

| };

|

| ni.number = 58;

|

| int dynamic_array[ni.number];

| dynamic_array[ni.number - 1] = 543;

|

| // work around unused variable warnings

| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'

| || dynamic_array[ni.number - 1] != 543);

|

| ;

| return 0;

| }

configure:12447: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:12447: $? = 0

configure:12467: result: -std=gnu99

configure:12588: checking for C++ compiler version

configure:12597: mpicxx --version >&5

g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16)

Copyright (C) 2015 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12608: $? = 0

configure:12597: mpicxx -v >&5

Using built-in specs.

COLLECT_GCC=/usr/bin/g++

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.8.5 20150623 (Red Hat 4.8.5-16) (GCC)

configure:12608: $? = 0

configure:12597: mpicxx -V >&5

g++: error: unrecognized command line option '-V'

g++: fatal error: no input files

compilation terminated.

configure:12608: $? = 4

configure:12597: mpicxx -qversion >&5

g++: error: unrecognized command line option '-qversion'

g++: fatal error: no input files

compilation terminated.

configure:12608: $? = 4

configure:12612: checking whether we are using the GNU C++ compiler

configure:12631: mpicxx -c -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5

configure:12631: $? = 0

configure:12640: result: yes

configure:12649: checking whether mpicxx accepts -g

configure:12669: mpicxx -c -g -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5

configure:12669: $? = 0

configure:12710: result: yes

configure:12735: checking dependency style of mpicxx

configure:12846: result: gcc3

configure:12879: checking how to run the C++ preprocessor

configure:12906: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp

configure:12906: $? = 0

configure:12920: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:12920: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:12945: result: mpicxx -E

configure:12965: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp

configure:12965: $? = 0

configure:12979: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:12979: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13148: checking for ld used by mpicxx

configure:13215: result: /usr/bin/ld -m elf_x86_64

configure:13222: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld

configure:13237: result: yes

configure:13292: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:14297: result: yes

configure:14333: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5

configure:14336: $? = 0

configure:14856: checking for mpicxx option to produce PIC

configure:14863: result: -fPIC -DPIC

configure:14871: checking if mpicxx PIC flag -fPIC -DPIC works

configure:14889: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:14893: $? = 0

configure:14906: result: yes

configure:14929: checking if mpicxx static flag -static works

configure:14957: result: no

configure:14969: checking if mpicxx supports -c -o file.o

configure:14990: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -o out/conftest2.o conftest.cpp >&5

configure:14994: $? = 0

configure:15016: result: yes

configure:15021: checking if mpicxx supports -c -o file.o

configure:15068: result: yes

configure:15098: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15134: result: yes

configure:15275: checking dynamic linker characteristics

configure:15942: result: GNU/Linux ld.so

configure:15995: checking how to hardcode library paths into programs

configure:16020: result: immediate

configure:16060: checking for C/C++ restrict keyword

configure:16085: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:16085: $? = 0

configure:16093: result: __restrict

configure:16113: checking whether mpicxx supports C++11 features by default

configure:16407: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5

conftest.cpp:36:2: error: #error "This is not a C++11 compiler"

#error "This is not a C++11 compiler"

^

configure:16407: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| /* end confdefs.h. */

|

|

| // If the compiler admits that it is not ready for C++11, why torture it?

| // Hopefully, this will speed up the test.

|

| #ifndef __cplusplus

|

| #error "This is not a C++ compiler"

|

| #elif __cplusplus < 201103L

|

| #error "This is not a C++11 compiler"

|

| #else

|

| namespace cxx11

| {

|

| namespace test_static_assert

| {

|

| template <typename T>

| struct check

| {

| static_assert(sizeof(int) <= sizeof(T), "not big enough");

| };

|

| }

|

| namespace test_final_override

| {

|

| struct Base

| {

| virtual void f() {}

| };

|

| struct Derived : public Base

| {

| virtual void f() override {}

| };

|

| }

|

| namespace test_double_right_angle_brackets

| {

|

| template < typename T >

| struct check {};

|

| typedef check<void> single_type;

| typedef check<check<void>> double_type;

| typedef check<check<check<void>>> triple_type;

| typedef check<check<check<check<void>>>> quadruple_type;

|

| }

|

| namespace test_decltype

| {

|

| int

| f()

| {

| int a = 1;

| decltype(a) b = 2;

| return a + b;

| }

|

| }

|

| namespace test_type_deduction

| {

|

| template < typename T1, typename T2 >

| struct is_same

| {

| static const bool value = false;

| };

|

| template < typename T >

| struct is_same<T, T>

| {

| static const bool value = true;

| };

|

| template < typename T1, typename T2 >

| auto

| add(T1 a1, T2 a2) -> decltype(a1 + a2)

| {

| return a1 + a2;

| }

|

| int

| test(const int c, volatile int v)

| {

| static_assert(is_same<int, decltype(0)>::value == true, "");

| static_assert(is_same<int, decltype(c)>::value == false, "");

| static_assert(is_same<int, decltype(v)>::value == false, "");

| auto ac = c;

| auto av = v;

| auto sumi = ac + av + 'x';

| auto sumf = ac + av + 1.0;

| static_assert(is_same<int, decltype(ac)>::value == true, "");

| static_assert(is_same<int, decltype(av)>::value == true, "");

| static_assert(is_same<int, decltype(sumi)>::value == true, "");

| static_assert(is_same<int, decltype(sumf)>::value == false, "");

| static_assert(is_same<int, decltype(add(c, v))>::value == true, "");

| return (sumf > 0.0) ? sumi : add(c, v);

| }

|

| }

|

| namespace test_noexcept

| {

|

| int f() { return 0; }

| int g() noexcept { return 0; }

|

| static_assert(noexcept(f()) == false, "");

| static_assert(noexcept(g()) == true, "");

|

| }

|

| namespace test_constexpr

| {

|

| template < typename CharT >

| unsigned long constexpr

| strlen_c_r(const CharT *const s, const unsigned long acc) noexcept

| {

| return *s ? strlen_c_r(s + 1, acc + 1) : acc;

| }

|

| template < typename CharT >

| unsigned long constexpr

| strlen_c(const CharT *const s) noexcept

| {

| return strlen_c_r(s, 0UL);

| }

|

| static_assert(strlen_c("") == 0UL, "");

| static_assert(strlen_c("1") == 1UL, "");

| static_assert(strlen_c("example") == 7UL, "");

| static_assert(strlen_c("another\0example") == 7UL, "");

|

| }

|

| namespace test_rvalue_references

| {

|

| template < int N >

| struct answer

| {

| static constexpr int value = N;

| };

|

| answer<1> f(int&) { return answer<1>(); }

| answer<2> f(const int&) { return answer<2>(); }

| answer<3> f(int&&) { return answer<3>(); }

|

| void

| test()

| {

| int i = 0;

| const int c = 0;

| static_assert(decltype(f(i))::value == 1, "");

| static_assert(decltype(f(c))::value == 2, "");

| static_assert(decltype(f(0))::value == 3, "");

| }

|

| }

|

| namespace test_uniform_initialization

| {

|

| struct test

| {

| static const int zero {};

| static const int one {1};

| };

|

| static_assert(test::zero == 0, "");

| static_assert(test::one == 1, "");

|

| }

|

| namespace test_lambdas

| {

|

| void

| test1()

| {

| auto lambda1 = [](){};

| auto lambda2 = lambda1;

| lambda1();

| lambda2();

| }

|

| int

| test2()

| {

| auto a = [](int i, int j){ return i + j; }(1, 2);

| auto b = []() -> int { return '0'; }();

| auto c = [=](){ return a + b; }();

| auto d = [&](){ return c; }();

| auto e = [a, &b](int x) mutable {

| const auto identity = [](int y){ return y; };

| for (auto i = 0; i < a; ++i)

| a += b--;

| return x + identity(a + b);

| }(0);

| return a + b + c + d + e;

| }

|

| int

| test3()

| {

| const auto nullary = [](){ return 0; };

| const auto unary = [](int x){ return x; };

| using nullary_t = decltype(nullary);

| using unary_t = decltype(unary);

| const auto higher1st = [](nullary_t f){ return f(); };

| const auto higher2nd = [unary](nullary_t f1){

| return [unary, f1](unary_t f2){ return f2(unary(f1())); };

| };

| return higher1st(nullary) + higher2nd(nullary)(unary);

| }

|

| }

|

| namespace test_variadic_templates

| {

|

| template <int...>

| struct sum;

|

| template <int N0, int... N1toN>

| struct sum<N0, N1toN...>

| {

| static constexpr auto value = N0 + sum<N1toN...>::value;

| };

|

| template <>

| struct sum<>

| {

| static constexpr auto value = 0;

| };

|

| static_assert(sum<>::value == 0, "");

| static_assert(sum<1>::value == 1, "");

| static_assert(sum<23>::value == 23, "");

| static_assert(sum<1, 2>::value == 3, "");

| static_assert(sum<5, 5, 11>::value == 21, "");

| static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");

|

| }

|

| // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae

| // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function

| // because of this.

| namespace test_template_alias_sfinae

| {

|

| struct foo {};

|

| template<typename T>

| using member = typename T::member_type;

|

| template<typename T>

| void func(...) {}

|

| template<typename T>

| void func(member<T>*) {}

|

| void test();

|

| void test() { func<foo>(0); }

|

| }

|

| } // namespace cxx11

|

| #endif // __cplusplus >= 201103L

|

|

|

configure:16414: result: no

configure:16424: checking whether mpicxx supports C++11 features with -std=gnu++11

configure:16720: mpicxx -std=gnu++11 -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5

configure:16720: $? = 0

configure:16729: result: yes

configure:17099: checking for mpicc -std=gnu99 option to support OpenMP

configure:17114: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

conftest.c:28:2: error: unknown type name 'choke'

choke me

^

In file included from conftest.c:30:0:

/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/omp.h:34:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'

typedef struct

^

configure:17114: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| /* end confdefs.h. */

|

| #ifndef _OPENMP

| choke me

| #endif

| #include <omp.h>

| int main () { return omp_get_num_threads (); }

|

configure:17131: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:17131: $? = 0

configure:17145: result: -fopenmp

configure:17199: checking for ar

configure:17226: result: ar

configure:17383: checking for ld

configure:17410: result: /usr/bin/ld -m elf_x86_64

configure:17475: checking for nm

configure:17502: result: /usr/bin/nm -B

configure:17567: checking for ar

configure:17594: result: ar

configure:17659: checking for as

configure:17675: found /usr/bin/as

configure:17686: result: as

configure:17751: checking for dlltool

configure:17778: result: false

configure:17843: checking for objdump

configure:17870: result: objdump

configure:17935: checking for strip

configure:17962: result: strip

configure:18027: checking for ranlib

configure:18054: result: ranlib

configure:18089: checking for special C compiler options needed for large files

configure:18134: result: no

configure:18140: checking for _FILE_OFFSET_BITS value needed for large files

configure:18165: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18165: $? = 0

configure:18197: result: no

configure:18288: checking for stdlib.h

configure:18288: result: yes

configure:18288: checking for unistd.h

configure:18288: result: yes

configure:18288: checking for sys/param.h

configure:18288: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18288: $? = 0

configure:18288: result: yes

configure:18308: checking for getpagesize

configure:18308: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18308: $? = 0

configure:18308: result: yes

configure:18317: checking for working mmap

configure:18464: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18464: $? = 0

configure:18464: ./conftest

configure:18464: $? = 0

configure:18474: result: yes

configure:18485: checking for malloc in -lmalloc

configure:18510: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lmalloc >&5

conftest.c:38:6: warning: conflicting types for built-in function 'malloc' [enabled by default]

char malloc ();

^

/usr/bin/ld: cannot find -lmalloc

collect2: error: ld returned 1 exit status

configure:18510: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char malloc ();

| int

| main ()

| {

| return malloc ();

| ;

| return 0;

| }

configure:18519: result: no

configure:18532: checking for struct stat.st_blksize

configure:18532: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18532: $? = 0

configure:18532: result: yes

configure:18546: checking sys/resource.h usability

configure:18546: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18546: $? = 0

configure:18546: result: yes

configure:18546: checking sys/resource.h presence

configure:18546: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18546: $? = 0

configure:18546: result: yes

configure:18546: checking for sys/resource.h

configure:18546: result: yes

configure:18558: checking sys/times.h usability

configure:18558: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18558: $? = 0

configure:18558: result: yes

configure:18558: checking sys/times.h presence

configure:18558: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18558: $? = 0

configure:18558: result: yes

configure:18558: checking for sys/times.h

configure:18558: result: yes

configure:18570: checking malloc.h usability

configure:18570: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18570: $? = 0

configure:18570: result: yes

configure:18570: checking malloc.h presence

configure:18570: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18570: $? = 0

configure:18570: result: yes

configure:18570: checking for malloc.h

configure:18570: result: yes

configure:18582: checking glob.h usability

configure:18582: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18582: $? = 0

configure:18582: result: yes

configure:18582: checking glob.h presence

configure:18582: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18582: $? = 0

configure:18582: result: yes

configure:18582: checking for glob.h

configure:18582: result: yes

configure:18594: checking fnmatch.h usability

configure:18594: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18594: $? = 0

configure:18594: result: yes

configure:18594: checking fnmatch.h presence

configure:18594: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18594: $? = 0

configure:18594: result: yes

configure:18594: checking for fnmatch.h

configure:18594: result: yes

configure:18606: checking wordexp.h usability

configure:18606: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18606: $? = 0

configure:18606: result: yes

configure:18606: checking wordexp.h presence

configure:18606: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18606: $? = 0

configure:18606: result: yes

configure:18606: checking for wordexp.h

configure:18606: result: yes

configure:18618: checking execinfo.h usability

configure:18618: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18618: $? = 0

configure:18618: result: yes

configure:18618: checking execinfo.h presence

configure:18618: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:18618: $? = 0

configure:18618: result: yes

configure:18618: checking for execinfo.h

configure:18618: result: yes

configure:18632: checking for mallinfo

configure:18632: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18632: $? = 0

configure:18632: result: yes

configure:18643: checking for backtrace

configure:18643: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18643: $? = 0

configure:18643: result: yes

configure:18656: checking for getrlimit

configure:18656: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18656: $? = 0

configure:18656: result: yes

configure:18667: checking for gethostname

configure:18667: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5

configure:18667: $? = 0

configure:18667: result: yes

configure:18753: checking for floor in -lm

configure:18778: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5

conftest.c:55:6: warning: conflicting types for built-in function 'floor' [enabled by default]

char floor ();

^

configure:18778: $? = 0

configure:18787: result: yes

configure:18800: checking whether isnan is declared

configure:18800: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18800: $? = 0

configure:18800: result: yes

configure:18815: checking for sqrtl

configure:18815: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5

conftest.c:73:6: warning: conflicting types for built-in function 'sqrtl' [enabled by default]

char sqrtl ();

^

configure:18815: $? = 0

configure:18815: result: yes

configure:18826: checking for feenableexcept

configure:18826: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5

configure:18826: $? = 0

configure:18826: result: yes

configure:18836: checking for fenv_t.__control

configure:18836: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

conftest.c: In function 'main':

conftest.c:58:12: error: 'fenv_t' has no member named '__control'

if (ac_aggr.__control)

^

configure:18836: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "unknown"

| #define C_VERSION "unknown"

| #define USER_NAME "hydro"

| #define HOST_NAME "grid-master.hydromech.tuc.gr"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:18836: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

conftest.c: In function 'main':

conftest.c:58:19: error: 'fenv_t' has no member named '__control'

if (sizeof ac_aggr.__control)

^

configure:18836: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "unknown"

| #define C_VERSION "unknown"

| #define USER_NAME "hydro"

| #define HOST_NAME "grid-master.hydromech.tuc.gr"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (sizeof ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:18836: result: no

configure:18846: checking for fenv_t.__mxcsr

configure:18846: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:18846: $? = 0

configure:18846: result: yes

configure:18869: checking for DATA support

configure:18883: result:

configure:19370: checking pthread.h usability

configure:19370: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:19370: $? = 0

configure:19370: result: yes

configure:19370: checking pthread.h presence

configure:19370: mpicc -E -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:19370: $? = 0

configure:19370: result: yes

configure:19370: checking for pthread.h

configure:19370: result: yes

configure:19380: checking for pthread_create in -lpthread

configure:19405: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lpthread -lm >&5

configure:19405: $? = 0

configure:19414: result: yes

configure:19528: checking szlib.h usability

configure:19528: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:19528: $? = 0

configure:19528: result: yes

configure:19528: checking szlib.h presence

configure:19528: mpicc -E -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:19528: $? = 0

configure:19528: result: yes

configure:19528: checking for szlib.h

configure:19528: result: yes

configure:19538: checking for library containing SZ_BufftoBuffCompress

configure:19569: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lpthread -lm >&5

/tmp/ccURfKaY.o: In function `main':

conftest.c:(.text.startup+0x7): undefined reference to `SZ_BufftoBuffCompress'

collect2: error: ld returned 1 exit status

configure:19569: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "unknown"

| #define C_VERSION "unknown"

| #define USER_NAME "hydro"

| #define HOST_NAME "grid-master.hydromech.tuc.gr"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_SZLIB_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char SZ_BufftoBuffCompress ();

| int

| main ()

| {

| return SZ_BufftoBuffCompress ();

| ;

| return 0;

| }

configure:19569: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lsz -lpthread -lm >&5

configure:19569: $? = 0

configure:19586: result: -lsz

configure:19776: checking hdf5.h usability

configure:19776: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5

configure:19776: $? = 0

configure:19776: result: yes

configure:19776: checking hdf5.h presence

configure:19776: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c

configure:19776: $? = 0

configure:19776: result: yes

configure:19776: checking for hdf5.h

configure:19776: result: yes

configure:19786: checking for library containing H5Fopen

configure:19817: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lsz -lpthread -lm >&5

/tmp/ccv5J5R1.o: In function `main':

conftest.c:(.text.startup+0x7): undefined reference to `H5Fopen'

collect2: error: ld returned 1 exit status

configure:19817: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.1"

| #define PACKAGE_STRING "cdo 1.9.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "unknown"

| #define C_VERSION "unknown"

| #define USER_NAME "hydro"

| #define HOST_NAME "grid-master.hydromech.tuc.gr"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1