This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.1, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --prefix=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-fftw3 --with-proj=/usr/local --with-udunits2=/usr/local --with-xml2=/usr --with-threads=/usr --with-grib_api=/usr/local --with-curl=/usr ## --------- ## ## Platform. ## ## --------- ## hostname = grid-master.hydromech.tuc.gr uname -m = x86_64 uname -r = 3.10.0-693.5.2.el7.x86_64 uname -s = Linux uname -v = #1 SMP Fri Oct 20 20:32:50 UTC 2017 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /usr/lib64/openmpi/bin PATH: /etc/fcm/bin PATH: /usr/local/bin PATH: /usr/lib64/openmpi/bin PATH: /etc/fcm/bin PATH: /usr/local/bin PATH: /home/hydro/.local/bin PATH: /home/hydro/bin PATH: /usr/lib64/openmpi/bin PATH: /etc/fcm/bin PATH: /usr/local/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2612: checking build system type configure:2626: result: x86_64-unknown-linux-gnu configure:2646: checking host system type configure:2659: result: x86_64-unknown-linux-gnu configure:2698: checking for a BSD-compatible install configure:2766: result: /usr/bin/install -c configure:2777: checking whether build environment is sane configure:2832: result: yes configure:2983: checking for a thread-safe mkdir -p configure:3022: result: /usr/bin/mkdir -p configure:3029: checking for gawk configure:3045: found /usr/bin/gawk configure:3056: result: gawk configure:3067: checking whether make sets $(MAKE) configure:3089: result: yes configure:3118: checking whether make supports nested variables configure:3135: result: yes configure:3263: checking whether to enable maintainer-specific portions of Makefiles configure:3272: result: no configure:3299: checking for style of include used by make configure:3327: result: GNU configure:3398: checking for gcc configure:3425: result: mpicc configure:3654: checking for C compiler version configure:3663: mpicc --version >&5 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3674: $? = 0 configure:3663: mpicc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-16) (GCC) configure:3674: $? = 0 configure:3663: mpicc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3674: $? = 4 configure:3663: mpicc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3674: $? = 4 configure:3694: checking whether the C compiler works configure:3716: mpicc -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:3720: $? = 0 configure:3768: result: yes configure:3771: checking for C compiler default output file name configure:3773: result: a.out configure:3779: checking for suffix of executables configure:3786: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:3790: $? = 0 configure:3812: result: configure:3834: checking whether we are cross compiling configure:3842: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:3846: $? = 0 configure:3853: ./conftest configure:3857: $? = 0 configure:3872: result: no configure:3877: checking for suffix of object files configure:3899: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:3903: $? = 0 configure:3924: result: o configure:3928: checking whether we are using the GNU C compiler configure:3947: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:3947: $? = 0 configure:3956: result: yes configure:3965: checking whether mpicc accepts -g configure:3985: mpicc -c -g -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:3985: $? = 0 configure:4026: result: yes configure:4043: checking for mpicc option to accept ISO C89 configure:4107: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:4107: $? = 0 configure:4120: result: none needed configure:4145: checking whether mpicc understands -c and -o together configure:4167: mpicc -c conftest.c -o conftest2.o configure:4170: $? = 0 configure:4167: mpicc -c conftest.c -o conftest2.o configure:4170: $? = 0 configure:4182: result: yes configure:4201: checking dependency style of mpicc configure:4312: result: gcc3 configure:4377: checking for ar configure:4393: found /usr/bin/ar configure:4404: result: ar configure:4430: checking the archiver (ar) interface configure:4446: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:4446: $? = 0 configure:4448: ar cru libconftest.a conftest.o >&5 configure:4451: $? = 0 configure:4479: result: ar configure:4500: setting up libtool configure:4548: checking how to print strings configure:4575: result: printf configure:4596: checking for a sed that does not truncate output configure:4660: result: /usr/bin/sed configure:4678: checking for grep that handles long lines and -e configure:4736: result: /usr/bin/grep configure:4741: checking for egrep configure:4803: result: /usr/bin/grep -E configure:4808: checking for fgrep configure:4870: result: /usr/bin/grep -F configure:4905: checking for ld used by mpicc configure:4972: result: /usr/bin/ld configure:4979: checking if the linker (/usr/bin/ld) is GNU ld configure:4994: result: yes configure:5006: checking for BSD- or MS-compatible name lister (nm) configure:5055: result: /usr/bin/nm -B configure:5185: checking the name lister (/usr/bin/nm -B) interface configure:5192: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:5195: /usr/bin/nm -B "conftest.o" configure:5198: output 0000000000000000 B some_variable configure:5205: result: BSD nm configure:5208: checking whether ln -s works configure:5212: result: yes configure:5220: checking the maximum length of command line arguments configure:5350: result: 1572864 configure:5367: checking whether the shell understands some XSI constructs configure:5377: result: yes configure:5381: checking whether the shell understands "+=" configure:5387: result: yes configure:5422: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:5462: result: func_convert_file_noop configure:5469: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:5489: result: func_convert_file_noop configure:5496: checking for /usr/bin/ld option to reload object files configure:5503: result: -r configure:5577: checking for objdump configure:5593: found /usr/bin/objdump configure:5604: result: objdump configure:5636: checking how to recognize dependent libraries configure:5838: result: pass_all configure:5923: checking for dlltool configure:5953: result: no configure:5983: checking how to associate runtime and link libraries configure:6010: result: printf %s\n configure:6134: checking for archiver @FILE support configure:6151: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:6151: $? = 0 configure:6154: ar cru libconftest.a @conftest.lst >&5 configure:6157: $? = 0 configure:6162: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6165: $? = 1 configure:6177: result: @ configure:6235: checking for strip configure:6251: found /usr/bin/strip configure:6262: result: strip configure:6334: checking for ranlib configure:6350: found /usr/bin/ranlib configure:6361: result: ranlib configure:6463: checking command to parse /usr/bin/nm -B output from mpicc object configure:6583: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:6586: $? = 0 configure:6590: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6593: $? = 0 configure:6659: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c conftstm.o >&5 configure:6662: $? = 0 configure:6700: result: ok configure:6737: checking for sysroot configure:6767: result: no configure:6844: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:6847: $? = 0 configure:7023: checking for mt configure:7053: result: no configure:7073: checking if : is a manifest tool configure:7079: : '-?' configure:7087: result: no configure:7729: checking how to run the C preprocessor configure:7760: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:7760: $? = 0 configure:7774: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:7774: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | /* end confdefs.h. */ | #include configure:7799: result: mpicc -E configure:7819: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:7819: $? = 0 configure:7833: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:7833: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | /* end confdefs.h. */ | #include configure:7862: checking for ANSI C header files configure:7882: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7882: $? = 0 configure:7955: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:7955: $? = 0 configure:7955: ./conftest configure:7955: $? = 0 configure:7966: result: yes configure:7979: checking for sys/types.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for sys/stat.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for stdlib.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for string.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for memory.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for strings.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for inttypes.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for stdint.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7979: checking for unistd.h configure:7979: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7979: $? = 0 configure:7979: result: yes configure:7993: checking for dlfcn.h configure:7993: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:7993: $? = 0 configure:7993: result: yes configure:8199: checking for objdir configure:8214: result: .libs configure:8485: checking if mpicc supports -fno-rtti -fno-exceptions configure:8503: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default] configure:8507: $? = 0 configure:8520: result: no configure:8847: checking for mpicc option to produce PIC configure:8854: result: -fPIC -DPIC configure:8862: checking if mpicc PIC flag -fPIC -DPIC works configure:8880: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fPIC -DPIC -DPIC conftest.c >&5 configure:8884: $? = 0 configure:8897: result: yes configure:8926: checking if mpicc static flag -static works configure:8954: result: no configure:8969: checking if mpicc supports -c -o file.o configure:8990: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -o out/conftest2.o conftest.c >&5 configure:8994: $? = 0 configure:9016: result: yes configure:9024: checking if mpicc supports -c -o file.o configure:9071: result: yes configure:9104: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10257: result: yes configure:10294: checking whether -lc should be explicitly linked in configure:10302: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:10305: $? = 0 configure:10320: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:10323: $? = 0 configure:10337: result: no configure:10497: checking dynamic linker characteristics configure:11008: mpicc -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11008: $? = 0 configure:11230: result: GNU/Linux ld.so configure:11337: checking how to hardcode library paths into programs configure:11362: result: immediate configure:11902: checking whether stripping libraries is possible configure:11907: result: yes configure:11942: checking if libtool supports shared libraries configure:11944: result: yes configure:11947: checking whether to build shared libraries configure:11968: result: yes configure:11971: checking whether to build static libraries configure:11975: result: yes configure:12060: checking for bash configure:12090: result: /bin/sh configure:12157: checking for gcc configure:12184: result: mpicc configure:12249: checking for g++ configure:12276: result: mpicxx configure:12298: checking for mpicc option to accept ISO C99 configure:12447: mpicc -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 conftest.c:74:29: error: expected ';', ',' or ')' before 'text' test_restrict (ccp restrict text) ^ conftest.c: In function 'main': conftest.c:128:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' char *restrict newvar = "Another string"; ^ conftest.c:128:18: error: 'newvar' undeclared (first use in this function) conftest.c:128:18: note: each undeclared identifier is reported only once for each function it appears in conftest.c:138:3: error: 'for' loop initial declarations are only allowed in C99 mode for (int i = 0; i < ia->datasize; ++i) ^ conftest.c:138:3: note: use option -std=c99 or -std=gnu99 to compile your code configure:12447: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:12447: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:12447: $? = 0 configure:12467: result: -std=gnu99 configure:12588: checking for C++ compiler version configure:12597: mpicxx --version >&5 g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12608: $? = 0 configure:12597: mpicxx -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-16) (GCC) configure:12608: $? = 0 configure:12597: mpicxx -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:12608: $? = 4 configure:12597: mpicxx -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:12608: $? = 4 configure:12612: checking whether we are using the GNU C++ compiler configure:12631: mpicxx -c -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5 configure:12631: $? = 0 configure:12640: result: yes configure:12649: checking whether mpicxx accepts -g configure:12669: mpicxx -c -g -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5 configure:12669: $? = 0 configure:12710: result: yes configure:12735: checking dependency style of mpicxx configure:12846: result: gcc3 configure:12879: checking how to run the C++ preprocessor configure:12906: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp configure:12906: $? = 0 configure:12920: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:12920: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12945: result: mpicxx -E configure:12965: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp configure:12965: $? = 0 configure:12979: mpicxx -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:12979: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13148: checking for ld used by mpicxx configure:13215: result: /usr/bin/ld -m elf_x86_64 configure:13222: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:13237: result: yes configure:13292: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14297: result: yes configure:14333: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5 configure:14336: $? = 0 configure:14856: checking for mpicxx option to produce PIC configure:14863: result: -fPIC -DPIC configure:14871: checking if mpicxx PIC flag -fPIC -DPIC works configure:14889: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14893: $? = 0 configure:14906: result: yes configure:14929: checking if mpicxx static flag -static works configure:14957: result: no configure:14969: checking if mpicxx supports -c -o file.o configure:14990: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -o out/conftest2.o conftest.cpp >&5 configure:14994: $? = 0 configure:15016: result: yes configure:15021: checking if mpicxx supports -c -o file.o configure:15068: result: yes configure:15098: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15134: result: yes configure:15275: checking dynamic linker characteristics configure:15942: result: GNU/Linux ld.so configure:15995: checking how to hardcode library paths into programs configure:16020: result: immediate configure:16060: checking for C/C++ restrict keyword configure:16085: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:16085: $? = 0 configure:16093: result: __restrict configure:16113: checking whether mpicxx supports C++11 features by default configure:16407: mpicxx -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5 conftest.cpp:36:2: error: #error "This is not a C++11 compiler" #error "This is not a C++11 compiler" ^ configure:16407: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | | // If the compiler admits that it is not ready for C++11, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201103L | | #error "This is not a C++11 compiler" | | #else | | namespace cxx11 | { | | namespace test_static_assert | { | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | } | | namespace test_final_override | { | | struct Base | { | virtual void f() {} | }; | | struct Derived : public Base | { | virtual void f() override {} | }; | | } | | namespace test_double_right_angle_brackets | { | | template < typename T > | struct check {}; | | typedef check single_type; | typedef check> double_type; | typedef check>> triple_type; | typedef check>>> quadruple_type; | | } | | namespace test_decltype | { | | int | f() | { | int a = 1; | decltype(a) b = 2; | return a + b; | } | | } | | namespace test_type_deduction | { | | template < typename T1, typename T2 > | struct is_same | { | static const bool value = false; | }; | | template < typename T > | struct is_same | { | static const bool value = true; | }; | | template < typename T1, typename T2 > | auto | add(T1 a1, T2 a2) -> decltype(a1 + a2) | { | return a1 + a2; | } | | int | test(const int c, volatile int v) | { | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == false, ""); | auto ac = c; | auto av = v; | auto sumi = ac + av + 'x'; | auto sumf = ac + av + 1.0; | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == true, ""); | return (sumf > 0.0) ? sumi : add(c, v); | } | | } | | namespace test_noexcept | { | | int f() { return 0; } | int g() noexcept { return 0; } | | static_assert(noexcept(f()) == false, ""); | static_assert(noexcept(g()) == true, ""); | | } | | namespace test_constexpr | { | | template < typename CharT > | unsigned long constexpr | strlen_c_r(const CharT *const s, const unsigned long acc) noexcept | { | return *s ? strlen_c_r(s + 1, acc + 1) : acc; | } | | template < typename CharT > | unsigned long constexpr | strlen_c(const CharT *const s) noexcept | { | return strlen_c_r(s, 0UL); | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("1") == 1UL, ""); | static_assert(strlen_c("example") == 7UL, ""); | static_assert(strlen_c("another\0example") == 7UL, ""); | | } | | namespace test_rvalue_references | { | | template < int N > | struct answer | { | static constexpr int value = N; | }; | | answer<1> f(int&) { return answer<1>(); } | answer<2> f(const int&) { return answer<2>(); } | answer<3> f(int&&) { return answer<3>(); } | | void | test() | { | int i = 0; | const int c = 0; | static_assert(decltype(f(i))::value == 1, ""); | static_assert(decltype(f(c))::value == 2, ""); | static_assert(decltype(f(0))::value == 3, ""); | } | | } | | namespace test_uniform_initialization | { | | struct test | { | static const int zero {}; | static const int one {1}; | }; | | static_assert(test::zero == 0, ""); | static_assert(test::one == 1, ""); | | } | | namespace test_lambdas | { | | void | test1() | { | auto lambda1 = [](){}; | auto lambda2 = lambda1; | lambda1(); | lambda2(); | } | | int | test2() | { | auto a = [](int i, int j){ return i + j; }(1, 2); | auto b = []() -> int { return '0'; }(); | auto c = [=](){ return a + b; }(); | auto d = [&](){ return c; }(); | auto e = [a, &b](int x) mutable { | const auto identity = [](int y){ return y; }; | for (auto i = 0; i < a; ++i) | a += b--; | return x + identity(a + b); | }(0); | return a + b + c + d + e; | } | | int | test3() | { | const auto nullary = [](){ return 0; }; | const auto unary = [](int x){ return x; }; | using nullary_t = decltype(nullary); | using unary_t = decltype(unary); | const auto higher1st = [](nullary_t f){ return f(); }; | const auto higher2nd = [unary](nullary_t f1){ | return [unary, f1](unary_t f2){ return f2(unary(f1())); }; | }; | return higher1st(nullary) + higher2nd(nullary)(unary); | } | | } | | namespace test_variadic_templates | { | | template | struct sum; | | template | struct sum | { | static constexpr auto value = N0 + sum::value; | }; | | template <> | struct sum<> | { | static constexpr auto value = 0; | }; | | static_assert(sum<>::value == 0, ""); | static_assert(sum<1>::value == 1, ""); | static_assert(sum<23>::value == 23, ""); | static_assert(sum<1, 2>::value == 3, ""); | static_assert(sum<5, 5, 11>::value == 21, ""); | static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, ""); | | } | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function | // because of this. | namespace test_template_alias_sfinae | { | | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { func(0); } | | } | | } // namespace cxx11 | | #endif // __cplusplus >= 201103L | | | configure:16414: result: no configure:16424: checking whether mpicxx supports C++11 features with -std=gnu++11 configure:16720: mpicxx -std=gnu++11 -c -g -O2 -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.cpp >&5 configure:16720: $? = 0 configure:16729: result: yes configure:17099: checking for mpicc -std=gnu99 option to support OpenMP configure:17114: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^ In file included from conftest.c:30:0: /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/omp.h:34:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' typedef struct ^ configure:17114: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:17131: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:17131: $? = 0 configure:17145: result: -fopenmp configure:17199: checking for ar configure:17226: result: ar configure:17383: checking for ld configure:17410: result: /usr/bin/ld -m elf_x86_64 configure:17475: checking for nm configure:17502: result: /usr/bin/nm -B configure:17567: checking for ar configure:17594: result: ar configure:17659: checking for as configure:17675: found /usr/bin/as configure:17686: result: as configure:17751: checking for dlltool configure:17778: result: false configure:17843: checking for objdump configure:17870: result: objdump configure:17935: checking for strip configure:17962: result: strip configure:18027: checking for ranlib configure:18054: result: ranlib configure:18089: checking for special C compiler options needed for large files configure:18134: result: no configure:18140: checking for _FILE_OFFSET_BITS value needed for large files configure:18165: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18165: $? = 0 configure:18197: result: no configure:18288: checking for stdlib.h configure:18288: result: yes configure:18288: checking for unistd.h configure:18288: result: yes configure:18288: checking for sys/param.h configure:18288: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18288: $? = 0 configure:18288: result: yes configure:18308: checking for getpagesize configure:18308: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18308: $? = 0 configure:18308: result: yes configure:18317: checking for working mmap configure:18464: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18464: $? = 0 configure:18464: ./conftest configure:18464: $? = 0 configure:18474: result: yes configure:18485: checking for malloc in -lmalloc configure:18510: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lmalloc >&5 conftest.c:38:6: warning: conflicting types for built-in function 'malloc' [enabled by default] char malloc (); ^ /usr/bin/ld: cannot find -lmalloc collect2: error: ld returned 1 exit status configure:18510: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:18519: result: no configure:18532: checking for struct stat.st_blksize configure:18532: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18532: $? = 0 configure:18532: result: yes configure:18546: checking sys/resource.h usability configure:18546: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18546: $? = 0 configure:18546: result: yes configure:18546: checking sys/resource.h presence configure:18546: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18546: $? = 0 configure:18546: result: yes configure:18546: checking for sys/resource.h configure:18546: result: yes configure:18558: checking sys/times.h usability configure:18558: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18558: $? = 0 configure:18558: result: yes configure:18558: checking sys/times.h presence configure:18558: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18558: $? = 0 configure:18558: result: yes configure:18558: checking for sys/times.h configure:18558: result: yes configure:18570: checking malloc.h usability configure:18570: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18570: $? = 0 configure:18570: result: yes configure:18570: checking malloc.h presence configure:18570: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18570: $? = 0 configure:18570: result: yes configure:18570: checking for malloc.h configure:18570: result: yes configure:18582: checking glob.h usability configure:18582: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18582: $? = 0 configure:18582: result: yes configure:18582: checking glob.h presence configure:18582: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18582: $? = 0 configure:18582: result: yes configure:18582: checking for glob.h configure:18582: result: yes configure:18594: checking fnmatch.h usability configure:18594: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18594: $? = 0 configure:18594: result: yes configure:18594: checking fnmatch.h presence configure:18594: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18594: $? = 0 configure:18594: result: yes configure:18594: checking for fnmatch.h configure:18594: result: yes configure:18606: checking wordexp.h usability configure:18606: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18606: $? = 0 configure:18606: result: yes configure:18606: checking wordexp.h presence configure:18606: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18606: $? = 0 configure:18606: result: yes configure:18606: checking for wordexp.h configure:18606: result: yes configure:18618: checking execinfo.h usability configure:18618: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18618: $? = 0 configure:18618: result: yes configure:18618: checking execinfo.h presence configure:18618: mpicc -E -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:18618: $? = 0 configure:18618: result: yes configure:18618: checking for execinfo.h configure:18618: result: yes configure:18632: checking for mallinfo configure:18632: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18632: $? = 0 configure:18632: result: yes configure:18643: checking for backtrace configure:18643: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18643: $? = 0 configure:18643: result: yes configure:18656: checking for getrlimit configure:18656: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18656: $? = 0 configure:18656: result: yes configure:18667: checking for gethostname configure:18667: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c >&5 configure:18667: $? = 0 configure:18667: result: yes configure:18753: checking for floor in -lm configure:18778: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5 conftest.c:55:6: warning: conflicting types for built-in function 'floor' [enabled by default] char floor (); ^ configure:18778: $? = 0 configure:18787: result: yes configure:18800: checking whether isnan is declared configure:18800: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18800: $? = 0 configure:18800: result: yes configure:18815: checking for sqrtl configure:18815: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5 conftest.c:73:6: warning: conflicting types for built-in function 'sqrtl' [enabled by default] char sqrtl (); ^ configure:18815: $? = 0 configure:18815: result: yes configure:18826: checking for feenableexcept configure:18826: mpicc -std=gnu99 -o conftest -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lm >&5 configure:18826: $? = 0 configure:18826: result: yes configure:18836: checking for fenv_t.__control configure:18836: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 conftest.c: In function 'main': conftest.c:58:12: error: 'fenv_t' has no member named '__control' if (ac_aggr.__control) ^ configure:18836: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:18836: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 conftest.c: In function 'main': conftest.c:58:19: error: 'fenv_t' has no member named '__control' if (sizeof ac_aggr.__control) ^ configure:18836: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:18836: result: no configure:18846: checking for fenv_t.__mxcsr configure:18846: mpicc -std=gnu99 -c -O2 -fPIC -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:18846: $? = 0 configure:18846: result: yes configure:18869: checking for DATA support configure:18883: result: configure:19370: checking pthread.h usability configure:19370: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:19370: $? = 0 configure:19370: result: yes configure:19370: checking pthread.h presence configure:19370: mpicc -E -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:19370: $? = 0 configure:19370: result: yes configure:19370: checking for pthread.h configure:19370: result: yes configure:19380: checking for pthread_create in -lpthread configure:19405: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lpthread -lm >&5 configure:19405: $? = 0 configure:19414: result: yes configure:19528: checking szlib.h usability configure:19528: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:19528: $? = 0 configure:19528: result: yes configure:19528: checking szlib.h presence configure:19528: mpicc -E -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:19528: $? = 0 configure:19528: result: yes configure:19528: checking for szlib.h configure:19528: result: yes configure:19538: checking for library containing SZ_BufftoBuffCompress configure:19569: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lpthread -lm >&5 /tmp/ccURfKaY.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `SZ_BufftoBuffCompress' collect2: error: ld returned 1 exit status configure:19569: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:19569: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lsz -lpthread -lm >&5 configure:19569: $? = 0 configure:19586: result: -lsz configure:19776: checking hdf5.h usability configure:19776: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:19776: $? = 0 configure:19776: result: yes configure:19776: checking hdf5.h presence configure:19776: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:19776: $? = 0 configure:19776: result: yes configure:19776: checking for hdf5.h configure:19776: result: yes configure:19786: checking for library containing H5Fopen configure:19817: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lsz -lpthread -lm >&5 /tmp/ccv5J5R1.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `H5Fopen' collect2: error: ld returned 1 exit status configure:19817: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:19817: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lhdf5 -lsz -lpthread -lm >&5 configure:19817: $? = 0 configure:19834: result: -lhdf5 configure:19846: checking for library containing H5DSis_scale configure:19877: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lhdf5 -lsz -lpthread -lm >&5 /tmp/ccuvbZY9.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `H5DSis_scale' collect2: error: ld returned 1 exit status configure:19877: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:19877: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:19877: $? = 0 configure:19894: result: -lhdf5_hl configure:20121: checking netcdf.h usability configure:20121: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c >&5 configure:20121: $? = 0 configure:20121: result: yes configure:20121: checking netcdf.h presence configure:20121: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 conftest.c configure:20121: $? = 0 configure:20121: result: yes configure:20121: checking for netcdf.h configure:20121: result: yes configure:20131: checking for library containing nc_open configure:20162: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/ccupm5Fl.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `nc_open' collect2: error: ld returned 1 exit status configure:20162: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:20162: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:20162: $? = 0 configure:20179: result: -lnetcdf configure:20194: checking nc-config script configure:20198: checking for nc-config configure:20214: found /usr/local/bin/nc-config configure:20225: result: /usr/local/bin/nc-config configure:20234: checking netcdf's OpenDAP support configure:20240: result: yes configure:20246: checking netcdf's nc2 support configure:20253: result: yes configure:20259: checking netcdf's nc4 support configure:20266: result: yes configure:20272: checking netcdf's nc4/hdf5 support configure:20279: result: yes configure:20305: checking for library containing H5TS_mutex_lock configure:20336: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/ccbNBLkB.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:20336: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:20336: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/ccsKA3aI.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:20336: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:20353: result: no configure:20467: checking udunits2.h usability configure:20467: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:20467: $? = 0 configure:20467: result: yes configure:20467: checking udunits2.h presence configure:20467: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c configure:20467: $? = 0 configure:20467: result: yes configure:20467: checking for udunits2.h configure:20467: result: yes configure:20479: checking udunits2/udunits2.h usability configure:20479: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 conftest.c:100:31: fatal error: udunits2/udunits2.h: No such file or directory #include ^ compilation terminated. configure:20479: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:20479: result: no configure:20479: checking udunits2/udunits2.h presence configure:20479: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c conftest.c:67:31: fatal error: udunits2/udunits2.h: No such file or directory #include ^ compilation terminated. configure:20479: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | #include configure:20479: result: no configure:20479: checking for udunits2/udunits2.h configure:20479: result: no configure:20489: checking for library containing ut_parse configure:20520: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/cc6oodQ0.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ut_parse' collect2: error: ld returned 1 exit status configure:20520: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ut_parse (); | int | main () | { | return ut_parse (); | ; | return 0; | } configure:20520: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:20520: $? = 0 configure:20537: result: -ludunits2 configure:20726: checking for the CMOR library configure:20728: result: suppressed configure:20908: checking for the ECCODES library configure:20910: result: suppressed configure:21012: checking grib_api.h usability configure:21012: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:21012: $? = 0 configure:21012: result: yes configure:21012: checking grib_api.h presence configure:21012: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c configure:21012: $? = 0 configure:21012: result: yes configure:21012: checking for grib_api.h configure:21012: result: yes configure:21022: checking for library containing grib_get_message configure:21053: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/cc9PIlo9.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `grib_get_message' collect2: error: ld returned 1 exit status configure:21053: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:21053: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:21053: $? = 0 configure:21070: result: -lgrib_api configure:21103: checking for GRIB support configure:21120: result: yes configure:21126: checking for CGRIBEX support configure:21143: result: yes configure:21149: checking for SERVICE support configure:21166: result: yes configure:21172: checking for EXTRA support configure:21189: result: yes configure:21195: checking for IEG support configure:21212: result: yes configure:21218: checking for FFTW3 support configure:21232: checking fftw3.h usability configure:21232: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:21232: $? = 0 configure:21232: result: yes configure:21232: checking fftw3.h presence configure:21232: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c configure:21232: $? = 0 configure:21232: result: yes configure:21232: checking for fftw3.h configure:21232: result: yes configure:21242: checking for library containing fftw_cleanup configure:21273: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/cczFOVJq.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `fftw_cleanup' collect2: error: ld returned 1 exit status configure:21273: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_FFTW3_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fftw_cleanup (); | int | main () | { | return fftw_cleanup (); | ; | return 0; | } configure:21273: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:21273: $? = 0 configure:21290: result: -lfftw3 configure:21400: checking proj_api.h usability configure:21400: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:21400: $? = 0 configure:21400: result: yes configure:21400: checking proj_api.h presence configure:21400: mpicc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c configure:21400: $? = 0 configure:21400: result: yes configure:21400: checking for proj_api.h configure:21400: result: yes configure:21410: checking for library containing pj_init configure:21441: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /tmp/ccm7Y6dI.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `pj_init' collect2: error: ld returned 1 exit status configure:21441: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_FFTW3_H 1 | #define HAVE_LIBFFTW3 1 | #define HAVE_PROJ_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pj_init (); | int | main () | { | return pj_init (); | ; | return 0; | } configure:21441: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lproj -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:21441: $? = 0 configure:21458: result: -lproj configure:21582: checking curl/curl.h usability configure:21582: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:21582: $? = 0 configure:21582: result: yes configure:21582: checking curl/curl.h presence configure:21582: mpicc -E -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c configure:21582: $? = 0 configure:21582: result: yes configure:21582: checking for curl/curl.h configure:21582: result: yes configure:21592: checking for library containing curl_global_init configure:21623: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lproj -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 /usr/bin/ld: /tmp/ccihQ8n3.o: undefined reference to symbol 'curl_global_init' /usr/lib64/libcurl.so.4: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status configure:21623: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.1" | #define PACKAGE_STRING "cdo 1.9.1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.1" | #define PACKAGE "cdo" | #define VERSION "1.9.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "unknown" | #define C_VERSION "unknown" | #define USER_NAME "hydro" | #define HOST_NAME "grid-master.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_FFTW3_H 1 | #define HAVE_LIBFFTW3 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_CURL_CURL_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char curl_global_init (); | int | main () | { | return curl_global_init (); | ; | return 0; | } configure:21623: mpicc -std=gnu99 -o conftest -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib conftest.c -lcurl -lproj -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm >&5 configure:21623: $? = 0 configure:21640: result: -lcurl configure:21845: checking for MAGICS library configure:21847: result: suppressed configure:22050: checking for XML2 library configure:22052: result: suppressed configure:22071: checking for build a separate CDI library and link CDO to it configure:22088: result: no configure:22112: checking for building an additional static CDO binary configure:22125: result: no configure:22137: checking for HIRLAM extensions configure:22153: result: no configure:22173: checking if x86/amd64 assembler speaks SSE4.2 configure:22196: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:22196: $? = 0 configure:22199: result: yes configure:22224: checking if x86/amd64 assembler speaks AVX configure:22245: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:22245: $? = 0 configure:22248: result: yes configure:22273: checking if x86/amd64 assembler speaks AVX2 configure:22294: mpicc -std=gnu99 -c -O2 -fPIC -fopenmp -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2 conftest.c >&5 configure:22294: $? = 0 configure:22297: result: yes configure:22347: checking for gawk configure:22374: result: gawk configure:22517: checking that generated files are newer than configure configure:22523: result: done configure:22582: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.9.1, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on grid-master.hydromech.tuc.gr config.status:1338: creating test/File.test config.status:1338: creating test/Read_grib.test config.status:1338: creating test/Read_netcdf.test config.status:1338: creating test/Copy_netcdf.test config.status:1338: creating test/Comp.test config.status:1338: creating test/Compc.test config.status:1338: creating test/Cat.test config.status:1338: creating test/Gridarea.test config.status:1338: creating test/Genweights.test config.status:1338: creating test/Remap.test config.status:1338: creating test/Remap2.test config.status:1338: creating test/Remapeta.test config.status:1338: creating test/EOF.test config.status:1338: creating test/Select.test config.status:1338: creating test/Spectral.test config.status:1338: creating test/Vertint.test config.status:1338: creating test/Timstat.test config.status:1338: creating test/Timselstat.test config.status:1338: creating test/Seasstat.test config.status:1338: creating test/Runstat.test config.status:1338: creating test/Multiyearstat.test config.status:1338: creating test/Ydrunstat.test config.status:1338: creating test/Gridboxstat.test config.status:1338: creating test/Vertstat.test config.status:1338: creating test/Fldstat.test config.status:1338: creating test/Fldpctl.test config.status:1338: creating test/Ensstat.test config.status:1338: creating test/Enspctl.test config.status:1338: creating test/Merstat.test config.status:1338: creating test/Zonstat.test config.status:1338: creating test/Mergetime.test config.status:1338: creating test/Afterburner.test config.status:1338: creating test/Detrend.test config.status:1338: creating test/Arithc.test config.status:1338: creating test/Arith.test config.status:1338: creating test/Expr.test config.status:1338: creating test/Gradsdes.test config.status:1338: creating test/Collgrid.test config.status:1338: creating test/threads.test config.status:1338: creating test/tsformat.test config.status:1338: creating test/wildcard.test config.status:1338: creating test/MapReduce.test config.status:1338: creating test/Ninfo.test config.status:1338: creating Makefile config.status:1338: creating src/Makefile config.status:1338: creating contrib/Makefile config.status:1338: creating test/Makefile config.status:1338: creating test/data/Makefile config.status:1338: creating cdo.spec config.status:1338: creating cdo.settings config.status:1338: creating src/config.h config.status:1519: src/config.h is unchanged config.status:1567: executing depfiles commands config.status:1567: executing libtool commands configure:25241: === configuring in libcdi (/home/hydro/Downloads/cdo-1.9.1/libcdi) configure:25304: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-zlib=/usr/local' '--with-szlib=/usr/local' '--with-hdf5=/usr/local' '--with-netcdf=/usr/local' '--with-fftw3' '--with-proj=/usr/local' '--with-udunits2=/usr/local' '--with-xml2=/usr' '--with-threads=/usr' '--with-grib_api=/usr/local' '--with-curl=/usr' 'CC=mpicc' 'CFLAGS=-O2 -fPIC' 'LDFLAGS=-L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64' 'CPPFLAGS=-I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64' 'CXX=mpicxx' --cache-file=/dev/null --srcdir=. configure:25309: error: ./configure failed for libcdi ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O2 -fPIC' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_curl_curl_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fftw3_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_proj_api_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_udunits2_h=yes ac_cv_header_udunits2_udunits2_h=no ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_NC_CONFIG=/usr/local/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_CXX=mpicxx ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_curl_global_init=-lcurl ac_cv_search_fftw_cleanup=-lfftw3 ac_cv_search_grib_get_message=-lgrib_api ac_cv_search_nc_open=-lnetcdf ac_cv_search_pj_init=-lproj ac_cv_search_ut_parse=-ludunits2 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_gnupp11=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/missing autoconf' AUTOHEADER='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/missing autoheader' AUTOMAKE='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/missing automake-1.14' AWK='gawk' BASH='/bin/sh' BUILD_AVX2_TESTS_FALSE='#' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='mpicc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-O2 -fPIC -fopenmp' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='mpicc -E' CPPFLAGS='-I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/local/include -I/usr/include/openmpi-x86_64 -I/usr/local/include -I/usr/local/include/udunits2' CURL_INCLUDE=' -I/usr/include' CURL_LDFLAGS=' -L/usr/lib -lcurl' CXX='mpicxx -std=gnu++11' CXXCPP='mpicxx -E -std=gnu++11' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_GRIBAPI='yes' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='#' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' ENABLE_THREADS='yes' EXEEXT='' FCFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' GRIB_API_INCLUDE=' -I/usr/local/include' GRIB_API_LIBS=' -L/usr/local/lib -lgrib_api' HAVE_CXX11='1' HDF5_INCLUDE=' -I/usr/local/include' HDF5_LIBS=' -L/usr/local/lib -lhdf5' HDF5_ROOT='/usr/local' HOST_NAME='grid-master.hydromech.tuc.gr' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lib64/openmpi/lib -L/usr/local/lib -L/usr/lib64 -L/usr/local/lib' LIBOBJS='' LIBS='-lcurl -lproj -lfftw3 -lgrib_api -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='/usr/local/bin/nc-config' NETCDF_INCLUDE=' -I/usr/local/include' NETCDF_LIBS=' -L/usr/local/lib -lnetcdf' NETCDF_ROOT='/usr/local' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.1' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.1' PATH_SEPARATOR=':' PROJ_INCLUDE=' -I/usr/local/include' PROJ_LDFLAGS=' -L/usr/local/lib -lproj' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE=' -I/usr/local/include' SZLIB_LIBS=' -L/usr/local/lib -lsz' THREADS_INCLUDE=' -I/usr/include' THREADS_LIBS=' -L/usr/lib -lpthread' UDUNITS_INCLUDE=' -I/usr/local/include' UDUNITS_LDFLAGS=' -L/usr/local/lib -ludunits2' USER_NAME='hydro' VERSION='1.9.1' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='mpicc' ac_ct_CXX='mpicxx' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/hydro/Downloads/cdo-1.9.1/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' configure: exit 1