regridding a particular area taken from a larger area
Added by Frank Drost over 12 years ago
Hi,
I have some geopotential height data from ERA Interim, lat -9.75 to -90 and lon 0 to 359.25
I want to extract the area lat -15 to -90, lon 0 to 360, and regrid that onto a grid with
increments of 1.5degree grid in both lon and lat direction (0,1.5,3,4.5,6,7.5, etc for lon).
I have the following command:
cdo remapcon,r240x50 -sellonlatbox,0,360,-15,-90 input.nc output.nc
regridding is done over 240x50 as I assume I have longitudinal data from 0-360 and latitudinal
data from -15 to -90. 240 points over 0-360 results in an increment of 1.5 degree, and 50 points
from -15 to -90 is also over 1.5degrees.
However, the output file output.nc shows that there are 50 latitudes, going from 90 to -90. I
wanted 50 latitudes from -15 to -90. What have I done wrong?
Cheers
Replies (6)
RE: regridding a particular area taken from a larger area - Added by Jaison-Thomas Ambadan over 12 years ago
Hi Frank,
Can you please upload a sample of your input data?
Cheers,
J.
RE: regridding a particular area taken from a larger area - Added by Jaison-Thomas Ambadan over 12 years ago
Hi again,
I also got the same problem, i.e, the output lat is going from -90 to 90! (it looks like a bug) BUT there is a way to cheat CDO: here is the trick!
1. first create a template of require lat/lon
cdo -f nc -sellonlatbox,0,360,-15,-90 -random,r240x120 template.nc
2. then use the template as the remap grid type
cdo -remapcon,template.nc input.nc output.nc
DONE! And you will get what you want!
Hope this helps!
Cheers,
J.
PS: You might want to report this problem as a bug (just in case ...)
RE: regridding a particular area taken from a larger area - Added by Frank Drost over 12 years ago
Hi Jaison-Thomas,
Thanks for that trick. Indeed that worked for me too (well, for 3 out of the 4 datasets that I am using. For one I got an error message "unsupported grid type: generic. I have to find out why it doesn't work for that dataset). And I agree, there is probably a bug in the remapping.
cheers
RE: regridding a particular area taken from a larger area - Added by Jaison-Thomas Ambadan over 12 years ago
Hi Frank,
If it is a generic "grid-point" data (NOT spectral) then converting to NetCDF cell format before the remap might work, i.e., in the step 2 (above post):
cdo -f nc -remapcon,template.nc -setgridtype,cell input_data output.nc
Cheers,
J.
RE: regridding a particular area taken from a larger area - Added by Frank Drost over 12 years ago
Hi Jaison-Thomas,
This is a bit of a long text but I hope you can find enough info in here to maybe help me again?
I reckon it is a normal generic dataset as it is the NOAA_CIRES dataset. This is further confirmed by the output of 'cdo sinfov input.nc' (see far below)
When I typ the command you suggested,
'cdo -f nc -remapcon,template.nc -setgridtype,cell H1.nc output.nc',
I get the following message:
cdo remapcon: Started child process "-setgridtype,cell H1.nc (pipe1.1)"
Error (gridToUnstructured) : Grid type generic unsupported!
When I just look at the headers with ncdump -h I get the following info:
netcdf H1 {
dimensions:
gsize = 2 ;
lon = 180 ;
lat = 41 ;
sfc = 3 ;
level = 3 ;
time = UNLIMITED ; // (1680 currently)
variables:
float lon(lon) ;
lon:long_name = "Longitude" ;
lon:units = "degrees_east" ;
lon:standard_name = "longitude" ;
lon:axis = "X" ;
float lat(lat) ;
lat:long_name = "Latitude" ;
lat:units = "degrees_north" ;
lat:standard_name = "latitude" ;
lat:axis = "Y" ;
double sfc(sfc) ;
sfc:long_name = "surface" ;
sfc:axis = "Z" ;
float level(level) ;
level:long_name = "Level" ;
level:units = "millibar" ;
level:axis = "Z" ;
double time(time) ;
time:units = "hours since 1800-01-01 00:00:00" ;
time:calendar = "standard" ;
double time_bnds(time, sfc, gsize) ;
time_bnds:long_name = "Time Boundaries" ;
short hgt(time, level, lat, lon) ;
hgt:long_name = "Monthly Geopotential Heights on Pressure Levels" ;
hgt:standard_name = "geopotential_height" ;
hgt:units = "m" ;
hgt:add_offset = 31266.f ;
hgt:scale_factor = 1.f ;
hgt:_FillValue = -32767s ;
hgt:cell_methods = "time: mean (monthly from 6-hourly values)" ;
hgt:valid_range = -32766s, 28734s ;
hgt:unpacked_valid_range = -1500.f, 60000.f ;
hgt:actual_range = -308.9333f, 32673.17f ;
hgt:precision = 0s ;
hgt:GRIB_id = 7s ;
hgt:GRIB_name = "HGT" ;
hgt:var_desc = "Geopotential height" ;
hgt:dataset = "NOAA-CIRES 20th Century Reanalysis version 2 Monthly Averages" ;
hgt:level_desc = "Pressure Levels" ;
hgt:statistic = "Ensemble Mean" ;
hgt:parent_stat = "Individual Obs" ;
// global attributes:
:CDI = "Climate Data Interface version 1.5.0 (http://code.zmaw.de/projects/cdi)" ;
:Conventions = "CF-1.2" ;
:history = "Mon May 07 14:23:27 2012: cdo merge NOAA_CIRES_geo_200hpa_187101_201012_SH.nc NOAA_CIRES_geo_500hpa_187101_201012_SH.nc NOAA_CIRES_geo_1000hpa_187101_201012_SH.nc NOAA_CIRES_geo_3levels_187101_201012_SH.nc\n",
"Thu May 3 22:26:45 2012: ncrcat -O -d level,1000.000000 -d lat,-90.000000,-10.000000 -d lon,0.000000,358.000000 -d time,0,1679 /Datasets/20thC_ReanV2/Monthlies/pressure/hgt.mon.mean.nc /Public/www/X128.250.120.167.123.22.26.44.nc\n",
"created 2010/05 by Hoop (netCDF3)" ;
:institution = "NOAA ESRL/PSD" ;
:title = "Monthly NOAA-CIRES 20th Century Reanalysis" ;
:comments = "Data is from \n",
"NOAA-CIRES 20th Century Reanalysis version 2\n",
"(4x/day). It consists of most variables interpolated to\n",
"pressure surfaces from model (sigma) surfaces." ;
:platform = "Model" ;
:references = "http://www.esrl.noaa.gov/psd/data/gridded/data.20thCentReanalysis.html" ;
:citation = "Compo,G.P. <http://www.esrl.noaa.gov/psd/people/gilbert.p.compo>, \n",
"J.S. Whitaker <http://www.esrl.noaa.gov/psd/people/jeffrey.s.whitaker>,\n",
" and P.D. Sardeshmukh, 2006: Feasibility of a 100 year reanalysis using\n",
" only surface pressure data.\n",
" <http://www.esrl.noaa.gov/psd/people/gilbert.p.compo/Compoetal2006.pdf>\n",
" /Bull. Amer. Met. Soc./, 87, 175-190." ;
:version = "2.0" ;
:nco_openmp_thread_number = 1 ;
:CDO = "Climate Data Operators version 1.5.0 (http://code.zmaw.de/projects/cdo)" ;
}
cdo sinfov input.nc
File format: netCDF
-1 : Institut Source Name Time Typ Grid Size Num Levels Num
1 : unknown unknown time_bnds var F64 2 1 3 1
2 : unknown unknown hgt var I16 7380 2 3 2
Horizontal grids :
1 : generic > size : dim = 2
2 : lonlat > size : dim = 7380 nlon = 180 nlat = 41
lon : first = 0 last = 358 inc = 2 degrees_east circular
lat : first = -10 last = -90 inc = -2 degrees_north
Vertical grids :
1 : generic : 0 0 0
2 : pressure millibar : 200 500 1000
Time axis : 1680 steps
RefTime = 1800-01-01 00:00:00 Units = hours Calendar = STANDARD
YYYY-MM-DD hh:mm:ss YYYY-MM-DD hh:mm:ss YYYY-MM-DD hh:mm:ss YYYY-MM-DD hh:mm:ss
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Any idea what the issue is with this file?
cheers
RE: regridding a particular area taken from a larger area - Added by Jaison-Thomas Ambadan over 12 years ago
Hi Frank,
As far as I understand there are two different grid types embedded in your file (for the two variables): one is "generic" for the "time_bnds" (time bounds variable) and the other isn the normal latlon grid for the "Geopotential"(I have NO idea why the time-bounds are in different grid-type). You can see the grid description from "cdo griddes H1.nc". Anyway if you select "Geopotential" (which is a latlon grid-type), the remap will work! like:
cdo -f nc -remapcon,template.nc -selvar,hgt H1.nc output.nc
I guess you don't really need the time-bounds?
Cheers,
J.
PS: I think CDO cannot remap "generic" grid-type; may be converting to other grid-types and then remap might work. I'm not an expert on the subject (may be Uwe or Ralf can help with this)