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cdo built with netcdf but still "library support not compiled in" ?

Added by Hera Gudlaugsdottir almost 9 years ago

Hello,
The cdo -V command is as follows:

Climate Data Operators version 1.6.4 (http://code.zmaw.de/projects/cdo)
Compiled: by hera on askja-dw383.rhi.hi.is (x86_64-apple-darwin14.1.0) May 3 2015 15:14:38
Compiler: gcc -g -O2 -D_THREAD_SAFE -pthread
version: Apple LLVM version 6.1.0 (clang-602.0.49) (based on LLVM 3.6.0svn)
Features: PTHREADS Z
Libraries:
Filetypes: srv ext ieg grb nc
CDI library version : 1.6.4 of May 3 2015 15:14:30
CGRIBEX library version : 1.6.4 of Jun 27 2014 14:00:04
netCDF library version : 4.3.2 of Feb 23 2015 23:42:28 $
SERVICE library version : 1.3.2 of May 3 2015 15:14:20
EXTRA library version : 1.3.2 of May 3 2015 15:14:16

And as can be seen the netcdf has been installed. I however still get the error message

"Unsupported file type (library support not compiled in)"

when I want cdo to open and read .nc files. Any clues on why this is?

thanks,
Hera


Replies (5)

RE: cdo built with netcdf but still "library support not compiled in" ? - Added by Ralf Mueller almost 9 years ago

you seem to use an old version. Did you try to install cdo via macports, anaconda or homwbrew? see MacOS_Platform or Anaconda or homebrew

hth
ralf

RE: cdo built with netcdf but still "library support not compiled in" ? - Added by Hera Gudlaugsdottir almost 9 years ago

Thank you for this, I did re-install the netcdf and cdo using homebrew and now cdo -V gives:

Climate Data Operators version 1.6.9 (http://mpimet.mpg.de/cdo)
Compiled: by brew on yosemitevm.local (x86_64-apple-darwin14.3.0) Apr 28 2015 08:39:16
Compiler: clang -g -O2 -D_THREAD_SAFE -pthread
version: Apple LLVM version 6.1.0 (clang-602.0.49) (based on LLVM 3.6.0svn)
Features: PTHREADS NC4/HDF5 OPeNDAP SZ Z SSE3
Libraries:
Filetypes: srv ext ieg grb nc nc2 nc4 nc4c
CDI library version : 1.6.9 of Apr 28 2015 08:39:06
CGRIBEX library version : 1.7.2 of Apr 22 2015 13:44:04
netCDF library version : 4.3.3.1 of Apr 9 2015 00:56:35 $
HDF5 library version : 1.8.14
SERVICE library version : 1.3.2 of Apr 28 2015 08:39:03
EXTRA library version : 1.3.2 of Apr 28 2015 08:39:01
IEG library version : 1.3.3 of Apr 28 2015 08:39:02
FILE library version : 1.8.2 of Apr 28 2015 08:39:01

The hdf5 lib is there now, but not before. I however still get this message when I use afterburner. I assume I need to re-install it again, but do you know how I would attach the newly installed netcdf and hdf5 lib and include files to the afterburner ? I do not find them when I look in the folder that homebrew uses.

greetings,
Hera

RE: cdo built with netcdf but still "library support not compiled in" ? - Added by Ralf Mueller almost 9 years ago

could you upload the file (or at least some parts of it) and your call?

RE: cdo built with netcdf but still "library support not compiled in" ? - Added by Hera Gudlaugsdottir almost 9 years ago

I found the files and I have now cdo and afterburner properly installed, finally.
Thank you for your reply.

greetings
Hera

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