CDO

try "configure" again with

CPPFLAGS="-I/opt/cdo-install/include" LDFLAGS="-L/opt/cdo-install/lib" 

Thanks for your help !

Here is the message from the 'configure' step :

############################################

configure: CDO is configured with the following options: {
"CC" : "gcc -std=gnu99",
"CPP" : "gcc -E",
"CPPFLAGS" : "-I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include",
"CFLAGS" : "-fPIC -fopenmp ",
"LDFLAGS" : "-L/opt/cdo-install/lib -L/opt/cdo-install/lib -L/opt/cdo-install/lib -L/opt/cdo-install/lib -L/opt/cdo-install/lib",
"LIBS" : "-lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lz -lm ",
"FCFLAGS" : "",
"INCLUDES" : "INCLUDES",
"LD" : "/usr/bin/ld -m elf_x86_64",
"NM" : "/usr/bin/nm -B",
"AR" : "ar",
"AS" : "as",
"DLLTOOL" : "false",
"OBJDUMP" : "objdump",
"STRIP" : "strip",
"RANLIB" : "ranlib",
"INSTALL" : "/usr/bin/install -c",
"cdi" : {
"enable_cdi_lib" : false
},
"threads" : {
"lib" : "",
"include" : ""
},
"zlib" : {
"lib" : " -lz",
},
"szlib" : {
"lib" : "",
"include" : ""
},
"hdf5" : {
"lib" : " -L/opt/cdo-install/lib -lhdf5",
"include" : " -I/opt/cdo-install/include"
},
"netcdf" : {
"lib" : " -L/opt/cdo-install/lib -lnetcdf",
"include" : " -I/opt/cdo-install/include"
},
"udunits2" : {
"lib" : "",
"include" : ""
},
"proj" : {
"lib" : "",
"include" : ""
},
"USER_NAME" : "fritter",
"HOST_NAME" : "ritterlinuxlaptop",
"SYSTEM_TYPE" : "x86_64-unknown-linux-gnu"
}
configure:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.

############################################

So I think that "CPPFLAGS : -I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include" is not normal, right ?

I have also detected an other problem during the 'make install' of cdo :

....
   make[4]: Entering directory `/opt/cdo-install/cdo-1.6.4/libcdi/src'
   rmdir: failed to remove `/opt/cdo-install/lib': Directory not empty
   make[4]: [install-exec-hook] Error 1 (ignored)
   make[4]: Leaving directory `/opt/cdo-install/cdo-1.6.4/libcdi/src'
   make  install-data-hook
   make[4]: Entering directory `/opt/cdo-install/cdo-1.6.4/libcdi/src'
   rmdir: failed to remove `/opt/cdo-install/include': Directory not empty
   ....

Who does the program try to remove lib and include ?

if you would like to use the full functionality of CDO you should try to include other libraries such as "proj/proj4". Please have a look at: https://code.zmaw.de/projects/cdo/wiki/Libs4cdo

Ok, now I understood what is going on :

I have made (by mistake ...) 2 installations of CDO : one on /usr/share/local (without extra libraries netcdf, ...) and the other on /opt/cdo-install (with extra libraries)

when I type "cdo -V" in my terminal, I got the older version, without libraries.

When I go in /usr/share/local/bin and launches "./cdo -V", I got the same version
but when I go in /opt/cdo-install/bin and launches "./cdo -V" I got the right version, with extra librairies.

Now two questions :

1) How is it possible to uninstall properly cdo ? (in the 200 pages manual, they say how to install it but not how to uninstall it ... !)
2) How is it possible to link 'cdo' command in the terminal with the right version in /opt/cdo-install ?

Thanks !

just remove/delete the cdo binary from /usr/share/local/bin and simply create a soft link to the new cdo in /opt/cdo-install/bin or you can keep the old version and create a alias alias cdo='/opt/cdo-install/bin/cdo' for the new cdo version in your .bashrc (or equivalent alias for other csh/? shell you are using)