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CDO 1.6.5 Installation ยป config.log

configuration log file - Kostas S, 2014-10-24 23:02

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.6.5, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-threads=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-jasper=/usr/local --with-grib_api=/usr/local --with-proj=/usr/local --with-udunits2=/usr/local --with-magics=/usr/local --with-libxml2=/usr LIBS=-lstdc++ CFLAGS=-fopenmp --prefix=/usr/local

## --------- ##
## Platform. ##
## --------- ##

hostname = diogenis.hydromech.tuc.gr
uname -m = x86_64
uname -r = 2.6.32-504.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Sep 16 01:56:35 EDT 2014

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /home/HYDROMECH/kostas/bin
PATH: /usr/lib64/openmpi/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2598: checking build system type
configure:2612: result: x86_64-unknown-linux-gnu
configure:2632: checking host system type
configure:2645: result: x86_64-unknown-linux-gnu
configure:2684: checking for a BSD-compatible install
configure:2752: result: /usr/bin/install -c
configure:2763: checking whether build environment is sane
configure:2818: result: yes
configure:2969: checking for a thread-safe mkdir -p
configure:3008: result: /bin/mkdir -p
configure:3015: checking for gawk
configure:3031: found /bin/gawk
configure:3042: result: gawk
configure:3053: checking whether make sets $(MAKE)
configure:3075: result: yes
configure:3104: checking whether make supports nested variables
configure:3121: result: yes
configure:3249: checking whether to enable maintainer-specific portions of Makefiles
configure:3258: result: no
configure:3273: setting up libtool
configure:3321: checking how to print strings
configure:3348: result: printf
configure:3381: checking for style of include used by make
configure:3409: result: GNU
configure:3480: checking for gcc
configure:3496: found /usr/bin/gcc
configure:3507: result: gcc
configure:3736: checking for C compiler version
configure:3745: gcc --version >&5
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3756: $? = 0
configure:3745: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC)
configure:3756: $? = 0
configure:3745: gcc -V >&5
gcc: '-V' option must have argument
configure:3756: $? = 1
configure:3745: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3756: $? = 1
configure:3776: checking whether the C compiler works
configure:3798: gcc -fopenmp conftest.c -lstdc++ >&5
configure:3802: $? = 0
configure:3850: result: yes
configure:3853: checking for C compiler default output file name
configure:3855: result: a.out
configure:3861: checking for suffix of executables
configure:3868: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:3872: $? = 0
configure:3894: result:
configure:3916: checking whether we are cross compiling
configure:3924: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:3928: $? = 0
configure:3935: ./conftest
configure:3939: $? = 0
configure:3954: result: no
configure:3959: checking for suffix of object files
configure:3981: gcc -c -fopenmp conftest.c >&5
configure:3985: $? = 0
configure:4006: result: o
configure:4010: checking whether we are using the GNU C compiler
configure:4029: gcc -c -fopenmp conftest.c >&5
configure:4029: $? = 0
configure:4038: result: yes
configure:4047: checking whether gcc accepts -g
configure:4067: gcc -c -g conftest.c >&5
configure:4067: $? = 0
configure:4108: result: yes
configure:4125: checking for gcc option to accept ISO C89
configure:4189: gcc -c -fopenmp conftest.c >&5
configure:4189: $? = 0
configure:4202: result: none needed
configure:4227: checking whether gcc understands -c and -o together
configure:4249: gcc -c conftest.c -o conftest2.o
configure:4252: $? = 0
configure:4249: gcc -c conftest.c -o conftest2.o
configure:4252: $? = 0
configure:4264: result: yes
configure:4283: checking dependency style of gcc
configure:4394: result: gcc3
configure:4409: checking for a sed that does not truncate output
configure:4473: result: /bin/sed
configure:4491: checking for grep that handles long lines and -e
configure:4549: result: /bin/grep
configure:4554: checking for egrep
configure:4616: result: /bin/grep -E
configure:4621: checking for fgrep
configure:4683: result: /bin/grep -F
configure:4718: checking for ld used by gcc
configure:4785: result: /usr/bin/ld
configure:4792: checking if the linker (/usr/bin/ld) is GNU ld
configure:4807: result: yes
configure:4819: checking for BSD- or MS-compatible name lister (nm)
configure:4868: result: /usr/bin/nm -B
configure:4998: checking the name lister (/usr/bin/nm -B) interface
configure:5005: gcc -c -fopenmp conftest.c >&5
configure:5008: /usr/bin/nm -B "conftest.o"
configure:5011: output
0000000000000000 B some_variable
configure:5018: result: BSD nm
configure:5021: checking whether ln -s works
configure:5025: result: yes
configure:5033: checking the maximum length of command line arguments
configure:5163: result: 1966080
configure:5180: checking whether the shell understands some XSI constructs
configure:5190: result: yes
configure:5194: checking whether the shell understands "+="
configure:5200: result: yes
configure:5235: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:5275: result: func_convert_file_noop
configure:5282: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:5302: result: func_convert_file_noop
configure:5309: checking for /usr/bin/ld option to reload object files
configure:5316: result: -r
configure:5390: checking for objdump
configure:5406: found /usr/bin/objdump
configure:5417: result: objdump
configure:5449: checking how to recognize dependent libraries
configure:5651: result: pass_all
configure:5736: checking for dlltool
configure:5766: result: no
configure:5796: checking how to associate runtime and link libraries
configure:5823: result: printf %s\n
configure:5884: checking for ar
configure:5900: found /usr/bin/ar
configure:5911: result: ar
configure:5948: checking for archiver @FILE support
configure:5965: gcc -c -fopenmp conftest.c >&5
configure:5965: $? = 0
configure:5968: ar cru libconftest.a @conftest.lst >&5
configure:5971: $? = 0
configure:5976: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:5979: $? = 1
configure:5991: result: @
configure:6049: checking for strip
configure:6065: found /usr/bin/strip
configure:6076: result: strip
configure:6148: checking for ranlib
configure:6164: found /usr/bin/ranlib
configure:6175: result: ranlib
configure:6277: checking command to parse /usr/bin/nm -B output from gcc object
configure:6397: gcc -c -fopenmp conftest.c >&5
configure:6400: $? = 0
configure:6404: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6407: $? = 0
configure:6473: gcc -o conftest -fopenmp conftest.c conftstm.o >&5
configure:6476: $? = 0
configure:6514: result: ok
configure:6551: checking for sysroot
configure:6581: result: no
configure:6658: gcc -c -fopenmp conftest.c >&5
configure:6661: $? = 0
configure:6837: checking for mt
configure:6867: result: no
configure:6887: checking if : is a manifest tool
configure:6893: : '-?'
configure:6901: result: no
configure:7543: checking how to run the C preprocessor
configure:7574: gcc -E conftest.c
configure:7574: $? = 0
configure:7588: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:7588: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7613: result: gcc -E
configure:7633: gcc -E conftest.c
configure:7633: $? = 0
configure:7647: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:7647: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7676: checking for ANSI C header files
configure:7696: gcc -c -fopenmp conftest.c >&5
configure:7696: $? = 0
configure:7769: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:7769: $? = 0
configure:7769: ./conftest
configure:7769: $? = 0
configure:7780: result: yes
configure:7793: checking for sys/types.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for sys/stat.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for stdlib.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for string.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for memory.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for strings.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for inttypes.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for stdint.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7793: checking for unistd.h
configure:7793: gcc -c -fopenmp conftest.c >&5
configure:7793: $? = 0
configure:7793: result: yes
configure:7807: checking for dlfcn.h
configure:7807: gcc -c -fopenmp conftest.c >&5
configure:7807: $? = 0
configure:7807: result: yes
configure:8013: checking for objdir
configure:8028: result: .libs
configure:8299: checking if gcc supports -fno-rtti -fno-exceptions
configure:8317: gcc -c -fopenmp -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:8321: $? = 0
configure:8334: result: no
configure:8661: checking for gcc option to produce PIC
configure:8668: result: -fPIC -DPIC
configure:8676: checking if gcc PIC flag -fPIC -DPIC works
configure:8694: gcc -c -fopenmp -fPIC -DPIC -DPIC conftest.c >&5
configure:8698: $? = 0
configure:8711: result: yes
configure:8740: checking if gcc static flag -static works
configure:8768: result: no
configure:8783: checking if gcc supports -c -o file.o
configure:8804: gcc -c -fopenmp -o out/conftest2.o conftest.c >&5
configure:8808: $? = 0
configure:8830: result: yes
configure:8838: checking if gcc supports -c -o file.o
configure:8885: result: yes
configure:8918: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10071: result: yes
configure:10108: checking whether -lc should be explicitly linked in
configure:10116: gcc -c -fopenmp conftest.c >&5
configure:10119: $? = 0
configure:10134: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10137: $? = 0
configure:10151: result: no
configure:10311: checking dynamic linker characteristics
configure:10822: gcc -o conftest -fopenmp -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5
configure:10822: $? = 0
configure:11044: result: GNU/Linux ld.so
configure:11151: checking how to hardcode library paths into programs
configure:11176: result: immediate
configure:11716: checking whether stripping libraries is possible
configure:11721: result: yes
configure:11756: checking if libtool supports shared libraries
configure:11758: result: yes
configure:11761: checking whether to build shared libraries
configure:11782: result: yes
configure:11785: checking whether to build static libraries
configure:11789: result: yes
configure:11871: checking for gcc
configure:11898: result: gcc
configure:11920: checking for gcc option to accept ISO C99
configure:12069: gcc -c -fopenmp conftest.c >&5
conftest.c:73: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:127: error: 'newvar' undeclared (first use in this function)
conftest.c:127: error: (Each undeclared identifier is reported only once
conftest.c:127: error: for each function it appears in.)
conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code
configure:12069: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:12069: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:12069: $? = 0
configure:12089: result: -std=gnu99
configure:12106: checking for gcc -std=gnu99 option to support OpenMP
configure:12121: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:12121: $? = 0
configure:12152: result: none needed
configure:12206: checking for ar
configure:12233: result: ar
configure:12390: checking for ld
configure:12417: result: /usr/bin/ld -m elf_x86_64
configure:12482: checking for nm
configure:12509: result: /usr/bin/nm -B
configure:12574: checking for ar
configure:12601: result: ar
configure:12666: checking for as
configure:12682: found /usr/bin/as
configure:12693: result: as
configure:12758: checking for dlltool
configure:12785: result: false
configure:12850: checking for objdump
configure:12877: result: objdump
configure:12942: checking for strip
configure:12969: result: strip
configure:13034: checking for ranlib
configure:13061: result: ranlib
configure:13142: checking for g++
configure:13158: found /usr/bin/g++
configure:13169: result: g++
configure:13196: checking for C++ compiler version
configure:13205: g++ --version >&5
g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13216: $? = 0
configure:13205: g++ -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC)
configure:13216: $? = 0
configure:13205: g++ -V >&5
g++: '-V' option must have argument
configure:13216: $? = 1
configure:13205: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:13216: $? = 1
configure:13220: checking whether we are using the GNU C++ compiler
configure:13239: g++ -c conftest.cpp >&5
configure:13239: $? = 0
configure:13248: result: yes
configure:13257: checking whether g++ accepts -g
configure:13277: g++ -c -g conftest.cpp >&5
configure:13277: $? = 0
configure:13318: result: yes
configure:13343: checking dependency style of g++
configure:13454: result: gcc3
configure:13487: checking how to run the C++ preprocessor
configure:13514: g++ -E conftest.cpp
configure:13514: $? = 0
configure:13528: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:13528: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13553: result: g++ -E
configure:13573: g++ -E conftest.cpp
configure:13573: $? = 0
configure:13587: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:13587: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13756: checking for ld used by g++
configure:13823: result: /usr/bin/ld -m elf_x86_64
configure:13830: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13845: result: yes
configure:13900: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14905: result: yes
configure:14941: g++ -c -g -O2 conftest.cpp >&5
configure:14944: $? = 0
configure:15464: checking for g++ option to produce PIC
configure:15471: result: -fPIC -DPIC
configure:15479: checking if g++ PIC flag -fPIC -DPIC works
configure:15497: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15501: $? = 0
configure:15514: result: yes
configure:15537: checking if g++ static flag -static works
configure:15565: result: no
configure:15577: checking if g++ supports -c -o file.o
configure:15598: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:15602: $? = 0
configure:15624: result: yes
configure:15629: checking if g++ supports -c -o file.o
configure:15676: result: yes
configure:15706: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15742: result: yes
configure:15883: checking dynamic linker characteristics
configure:16550: result: GNU/Linux ld.so
configure:16603: checking how to hardcode library paths into programs
configure:16628: result: immediate
configure:16680: checking for special C compiler options needed for large files
configure:16725: result: no
configure:16731: checking for _FILE_OFFSET_BITS value needed for large files
configure:16756: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:16756: $? = 0
configure:16788: result: no
configure:16879: checking for stdlib.h
configure:16879: result: yes
configure:16879: checking for unistd.h
configure:16879: result: yes
configure:16879: checking for sys/param.h
configure:16879: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:16879: $? = 0
configure:16879: result: yes
configure:16899: checking for getpagesize
configure:16899: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:16899: $? = 0
configure:16899: result: yes
configure:16908: checking for working mmap
configure:17055: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:17055: $? = 0
configure:17055: ./conftest
configure:17055: $? = 0
configure:17065: result: yes
configure:17076: checking for malloc in -lmalloc
configure:17101: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lmalloc -lstdc++ >&5
conftest.c:35: warning: conflicting types for built-in function 'malloc'
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:17101: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:17110: result: no
configure:17123: checking for struct stat.st_blksize
configure:17123: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17123: $? = 0
configure:17123: result: yes
configure:17137: checking sys/resource.h usability
configure:17137: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17137: $? = 0
configure:17137: result: yes
configure:17137: checking sys/resource.h presence
configure:17137: gcc -E conftest.c
configure:17137: $? = 0
configure:17137: result: yes
configure:17137: checking for sys/resource.h
configure:17137: result: yes
configure:17149: checking sys/times.h usability
configure:17149: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17149: $? = 0
configure:17149: result: yes
configure:17149: checking sys/times.h presence
configure:17149: gcc -E conftest.c
configure:17149: $? = 0
configure:17149: result: yes
configure:17149: checking for sys/times.h
configure:17149: result: yes
configure:17161: checking malloc.h usability
configure:17161: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17161: $? = 0
configure:17161: result: yes
configure:17161: checking malloc.h presence
configure:17161: gcc -E conftest.c
configure:17161: $? = 0
configure:17161: result: yes
configure:17161: checking for malloc.h
configure:17161: result: yes
configure:17173: checking glob.h usability
configure:17173: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17173: $? = 0
configure:17173: result: yes
configure:17173: checking glob.h presence
configure:17173: gcc -E conftest.c
configure:17173: $? = 0
configure:17173: result: yes
configure:17173: checking for glob.h
configure:17173: result: yes
configure:17187: checking for mallinfo
configure:17187: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:17187: $? = 0
configure:17187: result: yes
configure:17198: checking whether isnan is declared
configure:17198: gcc -std=gnu99 -c -fopenmp conftest.c >&5
configure:17198: $? = 0
configure:17198: result: yes
configure:17213: checking for getrlimit
configure:17213: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:17213: $? = 0
configure:17213: result: yes
configure:17224: checking for gethostname
configure:17224: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5
configure:17224: $? = 0
configure:17224: result: yes
configure:17292: checking for floor in -lm
configure:17317: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lm -lstdc++ >&5
conftest.c:48: warning: conflicting types for built-in function 'floor'
configure:17317: $? = 0
configure:17326: result: yes
configure:17339: checking for DATA support
configure:17356: result: yes
configure:17840: checking pthread.h usability
configure:17840: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17840: $? = 0
configure:17840: result: yes
configure:17840: checking pthread.h presence
configure:17840: gcc -E -I/usr/local/include conftest.c
configure:17840: $? = 0
configure:17840: result: yes
configure:17840: checking for pthread.h
configure:17840: result: yes
configure:17850: checking for pthread_create in -lpthread
configure:17875: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5
configure:17875: $? = 0
configure:17884: result: yes
configure:17993: checking zlib.h usability
configure:17993: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:17993: $? = 0
configure:17993: result: yes
configure:17993: checking zlib.h presence
configure:17993: gcc -E -I/usr/local/include -I/usr/local/include conftest.c
configure:17993: $? = 0
configure:17993: result: yes
configure:17993: checking for zlib.h
configure:17993: result: yes
configure:18003: checking for library containing deflate
configure:18034: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5
/tmp/cch44uip.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `deflate'
collect2: ld returned 1 exit status
configure:18034: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:18034: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5
configure:18034: $? = 0
configure:18051: result: -lz
configure:18237: checking szlib.h usability
configure:18237: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:18237: $? = 0
configure:18237: result: yes
configure:18237: checking szlib.h presence
configure:18237: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:18237: $? = 0
configure:18237: result: yes
configure:18237: checking for szlib.h
configure:18237: result: yes
configure:18247: checking for library containing SZ_BufftoBuffCompress
configure:18278: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5
/tmp/ccLM7h2F.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `SZ_BufftoBuffCompress'
collect2: ld returned 1 exit status
configure:18278: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char SZ_BufftoBuffCompress ();
| int
| main ()
| {
| return SZ_BufftoBuffCompress ();
| ;
| return 0;
| }
configure:18278: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5
configure:18278: $? = 0
configure:18295: result: -lsz
configure:18485: checking hdf5.h usability
configure:18485: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:18485: $? = 0
configure:18485: result: yes
configure:18485: checking hdf5.h presence
configure:18485: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:18485: $? = 0
configure:18485: result: yes
configure:18485: checking for hdf5.h
configure:18485: result: yes
configure:18495: checking for library containing H5Fopen
configure:18526: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/cc7oMSe0.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5Fopen'
collect2: ld returned 1 exit status
configure:18526: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:18526: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:18526: $? = 0
configure:18543: result: -lhdf5
configure:18555: checking for library containing H5DSis_scale
configure:18586: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccGHUQ3i.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5DSis_scale'
collect2: ld returned 1 exit status
configure:18586: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:18586: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:18586: $? = 0
configure:18603: result: -lhdf5_hl
configure:18806: checking netcdf.h usability
configure:18806: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:18806: $? = 0
configure:18806: result: yes
configure:18806: checking netcdf.h presence
configure:18806: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:18806: $? = 0
configure:18806: result: yes
configure:18806: checking for netcdf.h
configure:18806: result: yes
configure:18816: checking for library containing nc_open
configure:18847: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccs1ohVt.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:18847: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:18847: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:18847: $? = 0
configure:18864: result: -lnetcdf
configure:18880: checking nc-config script
configure:18884: checking for nc-config
configure:18900: found /usr/local/bin/nc-config
configure:18911: result: /usr/local/bin/nc-config
configure:18920: checking netcdf's OpenDAP support
configure:18926: result: yes
configure:18932: checking netcdf's nc2 support
configure:18938: result: yes
configure:18944: checking netcdf's nc4 support
configure:18950: result: yes
configure:19070: checking for library containing jas_stream_memopen
configure:19101: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccZggxnS.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `jas_stream_memopen'
collect2: ld returned 1 exit status
configure:19101: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char jas_stream_memopen ();
| int
| main ()
| {
| return jas_stream_memopen ();
| ;
| return 0;
| }
configure:19101: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:19101: $? = 0
configure:19118: result: -ljasper
configure:19238: checking grib_api.h usability
configure:19238: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:19238: $? = 0
configure:19238: result: yes
configure:19238: checking grib_api.h presence
configure:19238: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:19238: $? = 0
configure:19238: result: yes
configure:19238: checking for grib_api.h
configure:19238: result: yes
configure:19248: checking for library containing grib_get_message
configure:19279: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccQSxRpr.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `grib_get_message'
collect2: ld returned 1 exit status
configure:19279: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:19279: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:19279: $? = 0
configure:19296: result: -lgrib_api
configure:19327: checking for GRIB support
configure:19344: result: yes
configure:19350: checking for CGRIBEX support
configure:19367: result: yes
configure:19373: checking for SERVICE support
configure:19390: result: yes
configure:19396: checking for EXTRA support
configure:19413: result: yes
configure:19419: checking for IEG support
configure:19436: result: yes
configure:19442: checking for FFTW3 support
configure:19624: checking proj_api.h usability
configure:19624: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:19624: $? = 0
configure:19624: result: yes
configure:19624: checking proj_api.h presence
configure:19624: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:19624: $? = 0
configure:19624: result: yes
configure:19624: checking for proj_api.h
configure:19624: result: yes
configure:19634: checking for library containing pj_init
configure:19665: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccvmPQwU.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `pj_init'
collect2: ld returned 1 exit status
configure:19665: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pj_init ();
| int
| main ()
| {
| return pj_init ();
| ;
| return 0;
| }
configure:19665: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:19665: $? = 0
configure:19682: result: -lproj
configure:19887: checking for the CURL library
configure:19889: result: suppressed
configure:19988: checking udunits2.h usability
configure:19988: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:19988: $? = 0
configure:19988: result: yes
configure:19988: checking udunits2.h presence
configure:19988: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:19988: $? = 0
configure:19988: result: yes
configure:19988: checking for udunits2.h
configure:19988: result: yes
configure:20000: checking udunits2/udunits2.h usability
configure:20000: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
conftest.c:100:31: error: udunits2/udunits2.h: No such file or directory
configure:20000: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <udunits2/udunits2.h>
configure:20000: result: no
configure:20000: checking udunits2/udunits2.h presence
configure:20000: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
conftest.c:67:31: error: udunits2/udunits2.h: No such file or directory
configure:20000: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| /* end confdefs.h. */
| #include <udunits2/udunits2.h>
configure:20000: result: no
configure:20000: checking for udunits2/udunits2.h
configure:20000: result: no
configure:20010: checking for library containing ut_parse
configure:20041: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/ccs6tCuu.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `ut_parse'
collect2: ld returned 1 exit status
configure:20041: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char ut_parse ();
| int
| main ()
| {
| return ut_parse ();
| ;
| return 0;
| }
configure:20041: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:20041: $? = 0
configure:20058: result: -ludunits2
configure:20183: checking magics_api.h usability
configure:20183: gcc -std=gnu99 -c -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:20183: $? = 0
configure:20183: result: yes
configure:20183: checking magics_api.h presence
configure:20183: gcc -E -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:20183: $? = 0
configure:20183: result: yes
configure:20183: checking for magics_api.h
configure:20183: result: yes
configure:20193: checking for library containing mag_open
configure:20224: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/cc5FoEjX.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `mag_open'
collect2: ld returned 1 exit status
configure:20224: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| #define HAVE_LIBUDUNITS2 1
| #define HAVE_MAGICS_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char mag_open ();
| int
| main ()
| {
| return mag_open ();
| ;
| return 0;
| }
configure:20224: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:20224: $? = 0
configure:20241: result: -lMagPlus
configure:20376: checking libxml/parser.h usability
configure:20376: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:20376: $? = 0
configure:20376: result: yes
configure:20376: checking libxml/parser.h presence
configure:20376: gcc -E -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:20376: $? = 0
configure:20376: result: yes
configure:20376: checking for libxml/parser.h
configure:20376: result: yes
configure:20388: checking libxml/tree.h usability
configure:20388: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:20388: $? = 0
configure:20388: result: yes
configure:20388: checking libxml/tree.h presence
configure:20388: gcc -E -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c
configure:20388: $? = 0
configure:20388: result: yes
configure:20388: checking for libxml/tree.h
configure:20388: result: yes
configure:20398: checking for library containing xmlInitMemory
configure:20429: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
/tmp/cc4ZDzdQ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `xmlInitMemory'
collect2: ld returned 1 exit status
configure:20429: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| #define HAVE_LIBUDUNITS2 1
| #define HAVE_MAGICS_API_H 1
| #define HAVE_LIBMAGICS 1
| #define HAVE_LIBXML_PARSER_H 1
| #define HAVE_LIBXML_TREE_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char xmlInitMemory ();
| int
| main ()
| {
| return xmlInitMemory ();
| ;
| return 0;
| }
configure:20429: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lxml2 -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5
configure:20429: $? = 0
configure:20446: result: -lxml2
configure:20489: checking for build a separate CDI library and link CDO to it
configure:20506: result: no
configure:20530: checking for building an additional static CDO binary
configure:20543: result: no
configure:20562: checking if x86/amd64 assembler speaks SSE4.2
configure:20585: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:20585: $? = 0
configure:20588: result: yes
configure:20613: checking if x86/amd64 assembler speaks AVX
configure:20634: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
configure:20634: $? = 0
configure:20637: result: yes
configure:20662: checking if x86/amd64 assembler speaks AVX2
configure:20683: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5
conftest.c: Assembler messages:
conftest.c:79: Error: no such instruction: `vpsravd (%rsp),%ymm8,%ymm7'
conftest.c:81: Error: suffix or operands invalid for `vpaddb'
configure:20683: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.5"
| #define PACKAGE_STRING "cdo 1.6.5"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.5"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| #define HAVE_LIBUDUNITS2 1
| #define HAVE_MAGICS_API_H 1
| #define HAVE_LIBMAGICS 1
| #define HAVE_LIBXML_PARSER_H 1
| #define HAVE_LIBXML_TREE_H 1
| #define HAVE_LIBXML2 1
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| do { long long int x;
| __asm__ __volatile__(
| "vpsravd (%%rsp), %%ymm8, %%ymm7" : : : "xmm7", "xmm8" );
| __asm__ __volatile__(
| "vpaddb %%ymm6,%%ymm7,%%ymm8" : : : "xmm6","xmm7","xmm8"); }
| while (0)
|
| ;
| return 0;
| }
configure:20692: result: no
configure:20729: checking for gawk
configure:20756: result: gawk
configure:20885: checking that generated files are newer than configure
configure:20891: result: done
configure:20946: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by cdo config.status 1.6.5, which was
generated by GNU Autoconf 2.68. Invocation command line was

CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status

on diogenis.hydromech.tuc.gr

config.status:1286: creating test/Cat.test
config.status:1286: creating test/Gridarea.test
config.status:1286: creating test/Genweights.test
config.status:1286: creating test/Remap.test
config.status:1286: creating test/Select.test
config.status:1286: creating test/Spectral.test
config.status:1286: creating test/Timstat.test
config.status:1286: creating test/Vertint.test
config.status:1286: creating test/Detrend.test
config.status:1286: creating Makefile
config.status:1286: creating src/Makefile
config.status:1286: creating contrib/Makefile
config.status:1286: creating test/Makefile
config.status:1286: creating test/data/Makefile
config.status:1286: creating cdo.spec
config.status:1286: creating cdo.settings
config.status:1286: creating src/config.h
config.status:1467: src/config.h is unchanged
config.status:1515: executing depfiles commands
config.status:1515: executing libtool commands
configure:23537: === configuring in libcdi (/home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/libcdi)
configure:23600: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-threads=/usr/local' '--with-zlib=/usr/local' '--with-szlib=/usr/local' '--with-hdf5=/usr/local' '--with-netcdf=/usr/local' '--with-jasper=/usr/local' '--with-grib_api=/usr/local' '--with-proj=/usr/local' '--with-udunits2=/usr/local' '--with-magics=/usr/local' '--with-libxml2=/usr' 'LIBS=-lstdc++' 'CFLAGS=-fopenmp' --cache-file=/dev/null --srcdir=.
configure:23619: CDO is configured with the following options:
configure:23638:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-fopenmp
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value=-lstdc++
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_grib_api_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_libxml_parser_h=yes
ac_cv_header_libxml_tree_h=yes
ac_cv_header_magics_api_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_proj_api_h=yes
ac_cv_header_pthread_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_udunits2_h=yes
ac_cv_header_udunits2_udunits2_h=no
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_lib_pthread_pthread_create=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_NC_CONFIG=/usr/local/bin/nc-config
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp='none needed'
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_SZ_BufftoBuffCompress=-lsz
ac_cv_search_deflate=-lz
ac_cv_search_grib_get_message=-lgrib_api
ac_cv_search_jas_stream_memopen=-ljasper
ac_cv_search_mag_open=-lMagPlus
ac_cv_search_nc_open=-lnetcdf
ac_cv_search_pj_init=-lproj
ac_cv_search_ut_parse=-ludunits2
ac_cv_search_xmlInitMemory=-lxml2
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1966080
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing aclocal-1.14'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing autoconf'
AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing autoheader'
AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing automake-1.14'
AWK='gawk'
BUILD_AVX2_TESTS_FALSE=''
BUILD_AVX2_TESTS_TRUE='#'
BUILD_AVX_TESTS_FALSE='#'
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE='#'
BUILD_SSE42_TESTS_TRUE=''
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-fopenmp '
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS='-I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='yes'
ENABLE_DATA='yes'
ENABLE_EXTRA='yes'
ENABLE_GRIB='yes'
ENABLE_IEG='yes'
ENABLE_MAGICS_FALSE='#'
ENABLE_MAGICS_TRUE=''
ENABLE_NETCDF='yes'
ENABLE_SERVICE='yes'
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=' -I/usr/local/include'
GRIB_API_LIBS=' -L/usr/local/lib -lgrib_api'
HDF5_INCLUDE=' -I/usr/local/include'
HDF5_LIBS=' -L/usr/local/lib -lhdf5'
HDF5_ROOT='/usr/local'
HOST_NAME='diogenis.hydromech.tuc.gr'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=' -L/usr/local/lib -ljasper'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib'
LIBOBJS=''
LIBS='-lxml2 -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++'
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=' -I/usr/local/include/magics'
MAGICS_LIBS=' -L/usr/local/lib -lMagPlus'
MAGICS_ROOT='/usr/local'
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG='/usr/local/bin/nc-config'
NETCDF_INCLUDE=' -I/usr/local/include'
NETCDF_LIBS=' -L/usr/local/lib -lnetcdf'
NETCDF_ROOT='/usr/local'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS=''
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.6.5'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.6.5'
PATH_SEPARATOR=':'
PROJ_INCLUDE=' -I/usr/local/include'
PROJ_LDFLAGS=' -L/usr/local/lib -lproj'
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=' -I/usr/local/include'
SZLIB_LIBS=' -L/usr/local/lib -lsz'
THREADS_INCLUDE=' -I/usr/local/include'
THREADS_LIBS=' -L/usr/local/lib -lpthread'
UDUNITS_INCLUDE=' -I/usr/local/include'
UDUNITS_LDFLAGS=' -L/usr/local/lib -ludunits2'
USER_NAME='kostas'
VERSION='1.6.5'
XML2_LIBS=' -L/usr/lib -lxml2'
ZLIB_INCLUDE=' -I/usr/local/include'
ZLIB_LIBS=' -L/usr/local/lib -lz'
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.6.5"
#define PACKAGE_STRING "cdo 1.6.5"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.6.5"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_MALLINFO 1
#define HAVE_DECL_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)"
#define USER_NAME "kostas"
#define HOST_NAME "diogenis.hydromech.tuc.gr"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define ENABLE_DATA 1
#define HAVE_PTHREAD_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_LIBNC_DAP 1
#define HAVE_NETCDF2 1
#define HAVE_NETCDF4 1
#define HAVE_LIBJASPER 1
#define HAVE_GRIB_API_H 1
#define HAVE_LIBGRIB_API 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define HAVE_PROJ_API_H 1
#define HAVE_LIBPROJ 1
#define HAVE_UDUNITS2_H 1
#define HAVE_LIBUDUNITS2 1
#define HAVE_MAGICS_API_H 1
#define HAVE_LIBMAGICS 1
#define HAVE_LIBXML_PARSER_H 1
#define HAVE_LIBXML_TREE_H 1
#define HAVE_LIBXML2 1
#define COMPILER "gcc -std=gnu99 -fopenmp "

configure: exit 0
    (1-1/1)