This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.6.5, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-threads=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-jasper=/usr/local --with-grib_api=/usr/local --with-proj=/usr/local --with-udunits2=/usr/local --with-magics=/usr/local --with-libxml2=/usr LIBS=-lstdc++ CFLAGS=-fopenmp --prefix=/usr/local ## --------- ## ## Platform. ## ## --------- ## hostname = diogenis.hydromech.tuc.gr uname -m = x86_64 uname -r = 2.6.32-504.el6.x86_64 uname -s = Linux uname -v = #1 SMP Tue Sep 16 01:56:35 EDT 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /home/HYDROMECH/kostas/bin PATH: /usr/lib64/openmpi/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2598: checking build system type configure:2612: result: x86_64-unknown-linux-gnu configure:2632: checking host system type configure:2645: result: x86_64-unknown-linux-gnu configure:2684: checking for a BSD-compatible install configure:2752: result: /usr/bin/install -c configure:2763: checking whether build environment is sane configure:2818: result: yes configure:2969: checking for a thread-safe mkdir -p configure:3008: result: /bin/mkdir -p configure:3015: checking for gawk configure:3031: found /bin/gawk configure:3042: result: gawk configure:3053: checking whether make sets $(MAKE) configure:3075: result: yes configure:3104: checking whether make supports nested variables configure:3121: result: yes configure:3249: checking whether to enable maintainer-specific portions of Makefiles configure:3258: result: no configure:3273: setting up libtool configure:3321: checking how to print strings configure:3348: result: printf configure:3381: checking for style of include used by make configure:3409: result: GNU configure:3480: checking for gcc configure:3496: found /usr/bin/gcc configure:3507: result: gcc configure:3736: checking for C compiler version configure:3745: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3756: $? = 0 configure:3745: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:3756: $? = 0 configure:3745: gcc -V >&5 gcc: '-V' option must have argument configure:3756: $? = 1 configure:3745: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3756: $? = 1 configure:3776: checking whether the C compiler works configure:3798: gcc -fopenmp conftest.c -lstdc++ >&5 configure:3802: $? = 0 configure:3850: result: yes configure:3853: checking for C compiler default output file name configure:3855: result: a.out configure:3861: checking for suffix of executables configure:3868: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:3872: $? = 0 configure:3894: result: configure:3916: checking whether we are cross compiling configure:3924: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:3928: $? = 0 configure:3935: ./conftest configure:3939: $? = 0 configure:3954: result: no configure:3959: checking for suffix of object files configure:3981: gcc -c -fopenmp conftest.c >&5 configure:3985: $? = 0 configure:4006: result: o configure:4010: checking whether we are using the GNU C compiler configure:4029: gcc -c -fopenmp conftest.c >&5 configure:4029: $? = 0 configure:4038: result: yes configure:4047: checking whether gcc accepts -g configure:4067: gcc -c -g conftest.c >&5 configure:4067: $? = 0 configure:4108: result: yes configure:4125: checking for gcc option to accept ISO C89 configure:4189: gcc -c -fopenmp conftest.c >&5 configure:4189: $? = 0 configure:4202: result: none needed configure:4227: checking whether gcc understands -c and -o together configure:4249: gcc -c conftest.c -o conftest2.o configure:4252: $? = 0 configure:4249: gcc -c conftest.c -o conftest2.o configure:4252: $? = 0 configure:4264: result: yes configure:4283: checking dependency style of gcc configure:4394: result: gcc3 configure:4409: checking for a sed that does not truncate output configure:4473: result: /bin/sed configure:4491: checking for grep that handles long lines and -e configure:4549: result: /bin/grep configure:4554: checking for egrep configure:4616: result: /bin/grep -E configure:4621: checking for fgrep configure:4683: result: /bin/grep -F configure:4718: checking for ld used by gcc configure:4785: result: /usr/bin/ld configure:4792: checking if the linker (/usr/bin/ld) is GNU ld configure:4807: result: yes configure:4819: checking for BSD- or MS-compatible name lister (nm) configure:4868: result: /usr/bin/nm -B configure:4998: checking the name lister (/usr/bin/nm -B) interface configure:5005: gcc -c -fopenmp conftest.c >&5 configure:5008: /usr/bin/nm -B "conftest.o" configure:5011: output 0000000000000000 B some_variable configure:5018: result: BSD nm configure:5021: checking whether ln -s works configure:5025: result: yes configure:5033: checking the maximum length of command line arguments configure:5163: result: 1966080 configure:5180: checking whether the shell understands some XSI constructs configure:5190: result: yes configure:5194: checking whether the shell understands "+=" configure:5200: result: yes configure:5235: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:5275: result: func_convert_file_noop configure:5282: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:5302: result: func_convert_file_noop configure:5309: checking for /usr/bin/ld option to reload object files configure:5316: result: -r configure:5390: checking for objdump configure:5406: found /usr/bin/objdump configure:5417: result: objdump configure:5449: checking how to recognize dependent libraries configure:5651: result: pass_all configure:5736: checking for dlltool configure:5766: result: no configure:5796: checking how to associate runtime and link libraries configure:5823: result: printf %s\n configure:5884: checking for ar configure:5900: found /usr/bin/ar configure:5911: result: ar configure:5948: checking for archiver @FILE support configure:5965: gcc -c -fopenmp conftest.c >&5 configure:5965: $? = 0 configure:5968: ar cru libconftest.a @conftest.lst >&5 configure:5971: $? = 0 configure:5976: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:5979: $? = 1 configure:5991: result: @ configure:6049: checking for strip configure:6065: found /usr/bin/strip configure:6076: result: strip configure:6148: checking for ranlib configure:6164: found /usr/bin/ranlib configure:6175: result: ranlib configure:6277: checking command to parse /usr/bin/nm -B output from gcc object configure:6397: gcc -c -fopenmp conftest.c >&5 configure:6400: $? = 0 configure:6404: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6407: $? = 0 configure:6473: gcc -o conftest -fopenmp conftest.c conftstm.o >&5 configure:6476: $? = 0 configure:6514: result: ok configure:6551: checking for sysroot configure:6581: result: no configure:6658: gcc -c -fopenmp conftest.c >&5 configure:6661: $? = 0 configure:6837: checking for mt configure:6867: result: no configure:6887: checking if : is a manifest tool configure:6893: : '-?' configure:6901: result: no configure:7543: checking how to run the C preprocessor configure:7574: gcc -E conftest.c configure:7574: $? = 0 configure:7588: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:7588: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | /* end confdefs.h. */ | #include configure:7613: result: gcc -E configure:7633: gcc -E conftest.c configure:7633: $? = 0 configure:7647: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:7647: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | /* end confdefs.h. */ | #include configure:7676: checking for ANSI C header files configure:7696: gcc -c -fopenmp conftest.c >&5 configure:7696: $? = 0 configure:7769: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:7769: $? = 0 configure:7769: ./conftest configure:7769: $? = 0 configure:7780: result: yes configure:7793: checking for sys/types.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for sys/stat.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for stdlib.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for string.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for memory.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for strings.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for inttypes.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for stdint.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7793: checking for unistd.h configure:7793: gcc -c -fopenmp conftest.c >&5 configure:7793: $? = 0 configure:7793: result: yes configure:7807: checking for dlfcn.h configure:7807: gcc -c -fopenmp conftest.c >&5 configure:7807: $? = 0 configure:7807: result: yes configure:8013: checking for objdir configure:8028: result: .libs configure:8299: checking if gcc supports -fno-rtti -fno-exceptions configure:8317: gcc -c -fopenmp -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8321: $? = 0 configure:8334: result: no configure:8661: checking for gcc option to produce PIC configure:8668: result: -fPIC -DPIC configure:8676: checking if gcc PIC flag -fPIC -DPIC works configure:8694: gcc -c -fopenmp -fPIC -DPIC -DPIC conftest.c >&5 configure:8698: $? = 0 configure:8711: result: yes configure:8740: checking if gcc static flag -static works configure:8768: result: no configure:8783: checking if gcc supports -c -o file.o configure:8804: gcc -c -fopenmp -o out/conftest2.o conftest.c >&5 configure:8808: $? = 0 configure:8830: result: yes configure:8838: checking if gcc supports -c -o file.o configure:8885: result: yes configure:8918: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10071: result: yes configure:10108: checking whether -lc should be explicitly linked in configure:10116: gcc -c -fopenmp conftest.c >&5 configure:10119: $? = 0 configure:10134: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10137: $? = 0 configure:10151: result: no configure:10311: checking dynamic linker characteristics configure:10822: gcc -o conftest -fopenmp -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5 configure:10822: $? = 0 configure:11044: result: GNU/Linux ld.so configure:11151: checking how to hardcode library paths into programs configure:11176: result: immediate configure:11716: checking whether stripping libraries is possible configure:11721: result: yes configure:11756: checking if libtool supports shared libraries configure:11758: result: yes configure:11761: checking whether to build shared libraries configure:11782: result: yes configure:11785: checking whether to build static libraries configure:11789: result: yes configure:11871: checking for gcc configure:11898: result: gcc configure:11920: checking for gcc option to accept ISO C99 configure:12069: gcc -c -fopenmp conftest.c >&5 conftest.c:73: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127: error: 'newvar' undeclared (first use in this function) conftest.c:127: error: (Each undeclared identifier is reported only once conftest.c:127: error: for each function it appears in.) conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code configure:12069: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:12069: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:12069: $? = 0 configure:12089: result: -std=gnu99 configure:12106: checking for gcc -std=gnu99 option to support OpenMP configure:12121: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:12121: $? = 0 configure:12152: result: none needed configure:12206: checking for ar configure:12233: result: ar configure:12390: checking for ld configure:12417: result: /usr/bin/ld -m elf_x86_64 configure:12482: checking for nm configure:12509: result: /usr/bin/nm -B configure:12574: checking for ar configure:12601: result: ar configure:12666: checking for as configure:12682: found /usr/bin/as configure:12693: result: as configure:12758: checking for dlltool configure:12785: result: false configure:12850: checking for objdump configure:12877: result: objdump configure:12942: checking for strip configure:12969: result: strip configure:13034: checking for ranlib configure:13061: result: ranlib configure:13142: checking for g++ configure:13158: found /usr/bin/g++ configure:13169: result: g++ configure:13196: checking for C++ compiler version configure:13205: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13216: $? = 0 configure:13205: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:13216: $? = 0 configure:13205: g++ -V >&5 g++: '-V' option must have argument configure:13216: $? = 1 configure:13205: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:13216: $? = 1 configure:13220: checking whether we are using the GNU C++ compiler configure:13239: g++ -c conftest.cpp >&5 configure:13239: $? = 0 configure:13248: result: yes configure:13257: checking whether g++ accepts -g configure:13277: g++ -c -g conftest.cpp >&5 configure:13277: $? = 0 configure:13318: result: yes configure:13343: checking dependency style of g++ configure:13454: result: gcc3 configure:13487: checking how to run the C++ preprocessor configure:13514: g++ -E conftest.cpp configure:13514: $? = 0 configure:13528: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:13528: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13553: result: g++ -E configure:13573: g++ -E conftest.cpp configure:13573: $? = 0 configure:13587: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:13587: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13756: checking for ld used by g++ configure:13823: result: /usr/bin/ld -m elf_x86_64 configure:13830: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:13845: result: yes configure:13900: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14905: result: yes configure:14941: g++ -c -g -O2 conftest.cpp >&5 configure:14944: $? = 0 configure:15464: checking for g++ option to produce PIC configure:15471: result: -fPIC -DPIC configure:15479: checking if g++ PIC flag -fPIC -DPIC works configure:15497: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15501: $? = 0 configure:15514: result: yes configure:15537: checking if g++ static flag -static works configure:15565: result: no configure:15577: checking if g++ supports -c -o file.o configure:15598: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15602: $? = 0 configure:15624: result: yes configure:15629: checking if g++ supports -c -o file.o configure:15676: result: yes configure:15706: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15742: result: yes configure:15883: checking dynamic linker characteristics configure:16550: result: GNU/Linux ld.so configure:16603: checking how to hardcode library paths into programs configure:16628: result: immediate configure:16680: checking for special C compiler options needed for large files configure:16725: result: no configure:16731: checking for _FILE_OFFSET_BITS value needed for large files configure:16756: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:16756: $? = 0 configure:16788: result: no configure:16879: checking for stdlib.h configure:16879: result: yes configure:16879: checking for unistd.h configure:16879: result: yes configure:16879: checking for sys/param.h configure:16879: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:16879: $? = 0 configure:16879: result: yes configure:16899: checking for getpagesize configure:16899: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:16899: $? = 0 configure:16899: result: yes configure:16908: checking for working mmap configure:17055: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:17055: $? = 0 configure:17055: ./conftest configure:17055: $? = 0 configure:17065: result: yes configure:17076: checking for malloc in -lmalloc configure:17101: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lmalloc -lstdc++ >&5 conftest.c:35: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:17101: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17110: result: no configure:17123: checking for struct stat.st_blksize configure:17123: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17123: $? = 0 configure:17123: result: yes configure:17137: checking sys/resource.h usability configure:17137: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17137: $? = 0 configure:17137: result: yes configure:17137: checking sys/resource.h presence configure:17137: gcc -E conftest.c configure:17137: $? = 0 configure:17137: result: yes configure:17137: checking for sys/resource.h configure:17137: result: yes configure:17149: checking sys/times.h usability configure:17149: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17149: $? = 0 configure:17149: result: yes configure:17149: checking sys/times.h presence configure:17149: gcc -E conftest.c configure:17149: $? = 0 configure:17149: result: yes configure:17149: checking for sys/times.h configure:17149: result: yes configure:17161: checking malloc.h usability configure:17161: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17161: $? = 0 configure:17161: result: yes configure:17161: checking malloc.h presence configure:17161: gcc -E conftest.c configure:17161: $? = 0 configure:17161: result: yes configure:17161: checking for malloc.h configure:17161: result: yes configure:17173: checking glob.h usability configure:17173: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17173: $? = 0 configure:17173: result: yes configure:17173: checking glob.h presence configure:17173: gcc -E conftest.c configure:17173: $? = 0 configure:17173: result: yes configure:17173: checking for glob.h configure:17173: result: yes configure:17187: checking for mallinfo configure:17187: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:17187: $? = 0 configure:17187: result: yes configure:17198: checking whether isnan is declared configure:17198: gcc -std=gnu99 -c -fopenmp conftest.c >&5 configure:17198: $? = 0 configure:17198: result: yes configure:17213: checking for getrlimit configure:17213: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:17213: $? = 0 configure:17213: result: yes configure:17224: checking for gethostname configure:17224: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5 configure:17224: $? = 0 configure:17224: result: yes configure:17292: checking for floor in -lm configure:17317: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lm -lstdc++ >&5 conftest.c:48: warning: conflicting types for built-in function 'floor' configure:17317: $? = 0 configure:17326: result: yes configure:17339: checking for DATA support configure:17356: result: yes configure:17840: checking pthread.h usability configure:17840: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17840: $? = 0 configure:17840: result: yes configure:17840: checking pthread.h presence configure:17840: gcc -E -I/usr/local/include conftest.c configure:17840: $? = 0 configure:17840: result: yes configure:17840: checking for pthread.h configure:17840: result: yes configure:17850: checking for pthread_create in -lpthread configure:17875: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5 configure:17875: $? = 0 configure:17884: result: yes configure:17993: checking zlib.h usability configure:17993: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:17993: $? = 0 configure:17993: result: yes configure:17993: checking zlib.h presence configure:17993: gcc -E -I/usr/local/include -I/usr/local/include conftest.c configure:17993: $? = 0 configure:17993: result: yes configure:17993: checking for zlib.h configure:17993: result: yes configure:18003: checking for library containing deflate configure:18034: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5 /tmp/cch44uip.o: In function `main': conftest.c:(.text+0xa): undefined reference to `deflate' collect2: ld returned 1 exit status configure:18034: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:18034: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5 configure:18034: $? = 0 configure:18051: result: -lz configure:18237: checking szlib.h usability configure:18237: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:18237: $? = 0 configure:18237: result: yes configure:18237: checking szlib.h presence configure:18237: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:18237: $? = 0 configure:18237: result: yes configure:18237: checking for szlib.h configure:18237: result: yes configure:18247: checking for library containing SZ_BufftoBuffCompress configure:18278: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5 /tmp/ccLM7h2F.o: In function `main': conftest.c:(.text+0xa): undefined reference to `SZ_BufftoBuffCompress' collect2: ld returned 1 exit status configure:18278: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:18278: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5 configure:18278: $? = 0 configure:18295: result: -lsz configure:18485: checking hdf5.h usability configure:18485: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:18485: $? = 0 configure:18485: result: yes configure:18485: checking hdf5.h presence configure:18485: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:18485: $? = 0 configure:18485: result: yes configure:18485: checking for hdf5.h configure:18485: result: yes configure:18495: checking for library containing H5Fopen configure:18526: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/cc7oMSe0.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5Fopen' collect2: ld returned 1 exit status configure:18526: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:18526: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:18526: $? = 0 configure:18543: result: -lhdf5 configure:18555: checking for library containing H5DSis_scale configure:18586: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccGHUQ3i.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5DSis_scale' collect2: ld returned 1 exit status configure:18586: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:18586: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:18586: $? = 0 configure:18603: result: -lhdf5_hl configure:18806: checking netcdf.h usability configure:18806: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:18806: $? = 0 configure:18806: result: yes configure:18806: checking netcdf.h presence configure:18806: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:18806: $? = 0 configure:18806: result: yes configure:18806: checking for netcdf.h configure:18806: result: yes configure:18816: checking for library containing nc_open configure:18847: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccs1ohVt.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: ld returned 1 exit status configure:18847: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:18847: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:18847: $? = 0 configure:18864: result: -lnetcdf configure:18880: checking nc-config script configure:18884: checking for nc-config configure:18900: found /usr/local/bin/nc-config configure:18911: result: /usr/local/bin/nc-config configure:18920: checking netcdf's OpenDAP support configure:18926: result: yes configure:18932: checking netcdf's nc2 support configure:18938: result: yes configure:18944: checking netcdf's nc4 support configure:18950: result: yes configure:19070: checking for library containing jas_stream_memopen configure:19101: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccZggxnS.o: In function `main': conftest.c:(.text+0xa): undefined reference to `jas_stream_memopen' collect2: ld returned 1 exit status configure:19101: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char jas_stream_memopen (); | int | main () | { | return jas_stream_memopen (); | ; | return 0; | } configure:19101: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:19101: $? = 0 configure:19118: result: -ljasper configure:19238: checking grib_api.h usability configure:19238: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:19238: $? = 0 configure:19238: result: yes configure:19238: checking grib_api.h presence configure:19238: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:19238: $? = 0 configure:19238: result: yes configure:19238: checking for grib_api.h configure:19238: result: yes configure:19248: checking for library containing grib_get_message configure:19279: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccQSxRpr.o: In function `main': conftest.c:(.text+0xa): undefined reference to `grib_get_message' collect2: ld returned 1 exit status configure:19279: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:19279: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:19279: $? = 0 configure:19296: result: -lgrib_api configure:19327: checking for GRIB support configure:19344: result: yes configure:19350: checking for CGRIBEX support configure:19367: result: yes configure:19373: checking for SERVICE support configure:19390: result: yes configure:19396: checking for EXTRA support configure:19413: result: yes configure:19419: checking for IEG support configure:19436: result: yes configure:19442: checking for FFTW3 support configure:19624: checking proj_api.h usability configure:19624: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:19624: $? = 0 configure:19624: result: yes configure:19624: checking proj_api.h presence configure:19624: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:19624: $? = 0 configure:19624: result: yes configure:19624: checking for proj_api.h configure:19624: result: yes configure:19634: checking for library containing pj_init configure:19665: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccvmPQwU.o: In function `main': conftest.c:(.text+0xa): undefined reference to `pj_init' collect2: ld returned 1 exit status configure:19665: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pj_init (); | int | main () | { | return pj_init (); | ; | return 0; | } configure:19665: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:19665: $? = 0 configure:19682: result: -lproj configure:19887: checking for the CURL library configure:19889: result: suppressed configure:19988: checking udunits2.h usability configure:19988: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:19988: $? = 0 configure:19988: result: yes configure:19988: checking udunits2.h presence configure:19988: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:19988: $? = 0 configure:19988: result: yes configure:19988: checking for udunits2.h configure:19988: result: yes configure:20000: checking udunits2/udunits2.h usability configure:20000: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 conftest.c:100:31: error: udunits2/udunits2.h: No such file or directory configure:20000: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:20000: result: no configure:20000: checking udunits2/udunits2.h presence configure:20000: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c conftest.c:67:31: error: udunits2/udunits2.h: No such file or directory configure:20000: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | #include configure:20000: result: no configure:20000: checking for udunits2/udunits2.h configure:20000: result: no configure:20010: checking for library containing ut_parse configure:20041: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/ccs6tCuu.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ut_parse' collect2: ld returned 1 exit status configure:20041: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ut_parse (); | int | main () | { | return ut_parse (); | ; | return 0; | } configure:20041: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:20041: $? = 0 configure:20058: result: -ludunits2 configure:20183: checking magics_api.h usability configure:20183: gcc -std=gnu99 -c -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:20183: $? = 0 configure:20183: result: yes configure:20183: checking magics_api.h presence configure:20183: gcc -E -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:20183: $? = 0 configure:20183: result: yes configure:20183: checking for magics_api.h configure:20183: result: yes configure:20193: checking for library containing mag_open configure:20224: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/cc5FoEjX.o: In function `main': conftest.c:(.text+0xa): undefined reference to `mag_open' collect2: ld returned 1 exit status configure:20224: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_MAGICS_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mag_open (); | int | main () | { | return mag_open (); | ; | return 0; | } configure:20224: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:20224: $? = 0 configure:20241: result: -lMagPlus configure:20376: checking libxml/parser.h usability configure:20376: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:20376: $? = 0 configure:20376: result: yes configure:20376: checking libxml/parser.h presence configure:20376: gcc -E -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:20376: $? = 0 configure:20376: result: yes configure:20376: checking for libxml/parser.h configure:20376: result: yes configure:20388: checking libxml/tree.h usability configure:20388: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:20388: $? = 0 configure:20388: result: yes configure:20388: checking libxml/tree.h presence configure:20388: gcc -E -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c configure:20388: $? = 0 configure:20388: result: yes configure:20388: checking for libxml/tree.h configure:20388: result: yes configure:20398: checking for library containing xmlInitMemory configure:20429: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 /tmp/cc4ZDzdQ.o: In function `main': conftest.c:(.text+0xa): undefined reference to `xmlInitMemory' collect2: ld returned 1 exit status configure:20429: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_MAGICS_API_H 1 | #define HAVE_LIBMAGICS 1 | #define HAVE_LIBXML_PARSER_H 1 | #define HAVE_LIBXML_TREE_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char xmlInitMemory (); | int | main () | { | return xmlInitMemory (); | ; | return 0; | } configure:20429: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib conftest.c -lxml2 -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5 configure:20429: $? = 0 configure:20446: result: -lxml2 configure:20489: checking for build a separate CDI library and link CDO to it configure:20506: result: no configure:20530: checking for building an additional static CDO binary configure:20543: result: no configure:20562: checking if x86/amd64 assembler speaks SSE4.2 configure:20585: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:20585: $? = 0 configure:20588: result: yes configure:20613: checking if x86/amd64 assembler speaks AVX configure:20634: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 configure:20634: $? = 0 configure:20637: result: yes configure:20662: checking if x86/amd64 assembler speaks AVX2 configure:20683: gcc -std=gnu99 -c -fopenmp -I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include conftest.c >&5 conftest.c: Assembler messages: conftest.c:79: Error: no such instruction: `vpsravd (%rsp),%ymm8,%ymm7' conftest.c:81: Error: suffix or operands invalid for `vpaddb' configure:20683: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.5" | #define PACKAGE_STRING "cdo 1.6.5" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_MAGICS_API_H 1 | #define HAVE_LIBMAGICS 1 | #define HAVE_LIBXML_PARSER_H 1 | #define HAVE_LIBXML_TREE_H 1 | #define HAVE_LIBXML2 1 | /* end confdefs.h. */ | | int | main () | { | | do { long long int x; | __asm__ __volatile__( | "vpsravd (%%rsp), %%ymm8, %%ymm7" : : : "xmm7", "xmm8" ); | __asm__ __volatile__( | "vpaddb %%ymm6,%%ymm7,%%ymm8" : : : "xmm6","xmm7","xmm8"); } | while (0) | | ; | return 0; | } configure:20692: result: no configure:20729: checking for gawk configure:20756: result: gawk configure:20885: checking that generated files are newer than configure configure:20891: result: done configure:20946: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.6.5, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on diogenis.hydromech.tuc.gr config.status:1286: creating test/Cat.test config.status:1286: creating test/Gridarea.test config.status:1286: creating test/Genweights.test config.status:1286: creating test/Remap.test config.status:1286: creating test/Select.test config.status:1286: creating test/Spectral.test config.status:1286: creating test/Timstat.test config.status:1286: creating test/Vertint.test config.status:1286: creating test/Detrend.test config.status:1286: creating Makefile config.status:1286: creating src/Makefile config.status:1286: creating contrib/Makefile config.status:1286: creating test/Makefile config.status:1286: creating test/data/Makefile config.status:1286: creating cdo.spec config.status:1286: creating cdo.settings config.status:1286: creating src/config.h config.status:1467: src/config.h is unchanged config.status:1515: executing depfiles commands config.status:1515: executing libtool commands configure:23537: === configuring in libcdi (/home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/libcdi) configure:23600: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-threads=/usr/local' '--with-zlib=/usr/local' '--with-szlib=/usr/local' '--with-hdf5=/usr/local' '--with-netcdf=/usr/local' '--with-jasper=/usr/local' '--with-grib_api=/usr/local' '--with-proj=/usr/local' '--with-udunits2=/usr/local' '--with-magics=/usr/local' '--with-libxml2=/usr' 'LIBS=-lstdc++' 'CFLAGS=-fopenmp' --cache-file=/dev/null --srcdir=. configure:23619: CDO is configured with the following options: configure:23638: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fopenmp ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value=-lstdc++ ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_libxml_parser_h=yes ac_cv_header_libxml_tree_h=yes ac_cv_header_magics_api_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_proj_api_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_udunits2_h=yes ac_cv_header_udunits2_udunits2_h=no ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/usr/local/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp='none needed' ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_deflate=-lz ac_cv_search_grib_get_message=-lgrib_api ac_cv_search_jas_stream_memopen=-ljasper ac_cv_search_mag_open=-lMagPlus ac_cv_search_nc_open=-lnetcdf ac_cv_search_pj_init=-lproj ac_cv_search_ut_parse=-ludunits2 ac_cv_search_xmlInitMemory=-lxml2 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing autoconf' AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing autoheader' AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing automake-1.14' AWK='gawk' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='#' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-fopenmp ' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/include/libxml2 -I/usr/local/include/magics -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='yes' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='#' ENABLE_MAGICS_TRUE='' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE=' -I/usr/local/include' GRIB_API_LIBS=' -L/usr/local/lib -lgrib_api' HDF5_INCLUDE=' -I/usr/local/include' HDF5_LIBS=' -L/usr/local/lib -lhdf5' HDF5_ROOT='/usr/local' HOST_NAME='diogenis.hydromech.tuc.gr' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LIBS=' -L/usr/local/lib -ljasper' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usr/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib' LIBOBJS='' LIBS='-lxml2 -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE=' -I/usr/local/include/magics' MAGICS_LIBS=' -L/usr/local/lib -lMagPlus' MAGICS_ROOT='/usr/local' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='/usr/local/bin/nc-config' NETCDF_INCLUDE=' -I/usr/local/include' NETCDF_LIBS=' -L/usr/local/lib -lnetcdf' NETCDF_ROOT='/usr/local' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.6.5' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.6.5' PATH_SEPARATOR=':' PROJ_INCLUDE=' -I/usr/local/include' PROJ_LDFLAGS=' -L/usr/local/lib -lproj' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE=' -I/usr/local/include' SZLIB_LIBS=' -L/usr/local/lib -lsz' THREADS_INCLUDE=' -I/usr/local/include' THREADS_LIBS=' -L/usr/local/lib -lpthread' UDUNITS_INCLUDE=' -I/usr/local/include' UDUNITS_LDFLAGS=' -L/usr/local/lib -ludunits2' USER_NAME='kostas' VERSION='1.6.5' XML2_LIBS=' -L/usr/lib -lxml2' ZLIB_INCLUDE=' -I/usr/local/include' ZLIB_LIBS=' -L/usr/local/lib -lz' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo/cdo-1.6.5/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.6.5" #define PACKAGE_STRING "cdo 1.6.5" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.6.5" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_MALLINFO 1 #define HAVE_DECL_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" #define USER_NAME "kostas" #define HOST_NAME "diogenis.hydromech.tuc.gr" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_H 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_LIBJASPER 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define HAVE_PROJ_API_H 1 #define HAVE_LIBPROJ 1 #define HAVE_UDUNITS2_H 1 #define HAVE_LIBUDUNITS2 1 #define HAVE_MAGICS_API_H 1 #define HAVE_LIBMAGICS 1 #define HAVE_LIBXML_PARSER_H 1 #define HAVE_LIBXML_TREE_H 1 #define HAVE_LIBXML2 1 #define COMPILER "gcc -std=gnu99 -fopenmp " configure: exit 0