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RE: CDO configuration with Cygwin and ncdf file size limi... ยป config.log

config_withoutszlib.log - Anonymous, 2011-02-05 11:49

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.4.7, which was
generated by GNU Autoconf 2.66. Invocation command line was

$ ./configure --with-ncdf=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/ --with-hdf5=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/ --with-zlib=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/

## --------- ##
## Platform. ##
## --------- ##

hostname = Laurens-PC
uname -m = i686
uname -r = 1.7.7(0.230/5/3)
uname -s = CYGWIN_NT-6.0
uname -v = 2010-08-31 09:58

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live
PATH: /cygdrive/c/Windows/system32
PATH: /cygdrive/c/Windows
PATH: /cygdrive/c/Windows/System32/Wbem
PATH: /cygdrive/c/Program Files/Common Files/Roxio Shared/DLLShared/
PATH: /cygdrive/c/Program Files/Common Files/Roxio Shared/9.0/DLLShared/
PATH: /cygdrive/c/Program Files/Microsoft Visual Studio 10.0/VC/bin
PATH: /cygdrive/c/Program Files/Microsoft Visual Studio 10.0/Common7/IDE
PATH: /cygdrive/c/Program Files/R/R-2.11.1/bin
PATH: /cygdrive/c/Program Files/Windows Live/Shared
PATH: /cygdrive/c/Program Files/QuickTime/QTSystem/
PATH: /cygdrive/c/Users/Laurens/Desktop/CDO


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2483: checking build system type
configure:2497: result: i686-pc-cygwin
configure:2517: checking host system type
configure:2530: result: i686-pc-cygwin
configure:2568: checking for a BSD-compatible install
configure:2636: result: /usr/bin/install -c
configure:2647: checking whether build environment is sane
configure:2697: result: yes
configure:2838: checking for a thread-safe mkdir -p
configure:2877: result: /usr/bin/mkdir -p
configure:2890: checking for gawk
configure:2906: found /usr/bin/gawk
configure:2917: result: gawk
configure:2928: checking whether make sets $(MAKE)
configure:2950: result: yes
configure:3033: checking whether to enable maintainer-specific portions of Makefiles
configure:3042: result: no
configure:3057: setting up libtool
configure:3105: checking how to print strings
configure:3132: result: printf
configure:3165: checking for style of include used by make
configure:3193: result: GNU
configure:3263: checking for gcc
configure:3279: found /usr/bin/gcc
configure:3290: result: gcc
configure:3519: checking for C compiler version
configure:3528: gcc --version >&5
gcc (GCC) 4.3.4 20090804 (release) 1
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3539: $? = 0
configure:3528: gcc -v >&5
Using built-in specs.
Target: i686-pc-cygwin
Configured with: /gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind --with-ecj-jar=/usr/share/java/ecj.jar
Thread model: posix
gcc version 4.3.4 20090804 (release) 1 (GCC)
configure:3539: $? = 0
configure:3528: gcc -V >&5
gcc: '-V' option must have argument
configure:3539: $? = 1
configure:3528: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3539: $? = 1
configure:3559: checking whether the C compiler works
configure:3581: gcc conftest.c >&5
configure:3585: $? = 0
configure:3633: result: yes
configure:3636: checking for C compiler default output file name
configure:3638: result: a.exe
configure:3644: checking for suffix of executables
configure:3651: gcc -o conftest.exe conftest.c >&5
configure:3655: $? = 0
configure:3677: result: .exe
configure:3699: checking whether we are cross compiling
configure:3707: gcc -o conftest.exe conftest.c >&5
configure:3711: $? = 0
configure:3718: ./conftest.exe
configure:3722: $? = 0
configure:3737: result: no
configure:3742: checking for suffix of object files
configure:3764: gcc -c conftest.c >&5
configure:3768: $? = 0
configure:3789: result: o
configure:3793: checking whether we are using the GNU C compiler
configure:3812: gcc -c conftest.c >&5
configure:3812: $? = 0
configure:3821: result: yes
configure:3830: checking whether gcc accepts -g
configure:3850: gcc -c -g conftest.c >&5
configure:3850: $? = 0
configure:3891: result: yes
configure:3908: checking for gcc option to accept ISO C89
configure:3972: gcc -c -g -O2 conftest.c >&5
configure:3972: $? = 0
configure:3985: result: none needed
configure:4007: checking dependency style of gcc
configure:4117: result: gcc3
configure:4132: checking for a sed that does not truncate output
configure:4196: result: /usr/bin/sed
configure:4214: checking for grep that handles long lines and -e
configure:4272: result: /usr/bin/grep
configure:4277: checking for egrep
configure:4339: result: /usr/bin/grep -E
configure:4344: checking for fgrep
configure:4406: result: /usr/bin/grep -F
configure:4441: checking for ld used by gcc
configure:4508: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:4515: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld
configure:4530: result: yes
configure:4542: checking for BSD- or MS-compatible name lister (nm)
configure:4591: result: /usr/bin/nm -B
configure:4721: checking the name lister (/usr/bin/nm -B) interface
configure:4728: gcc -c -g -O2 conftest.c >&5
configure:4731: /usr/bin/nm -B "conftest.o"
configure:4734: output
00000000 b .bss
00000000 d .data
00000000 N .debug_abbrev
00000000 N .debug_info
00000000 N .debug_line
00000000 N .debug_pubnames
00000000 t .text
00000000 B _some_variable
configure:4741: result: BSD nm
configure:4744: checking whether ln -s works
configure:4748: result: yes
configure:4756: checking the maximum length of command line arguments
configure:4881: result: 8192
configure:4898: checking whether the shell understands some XSI constructs
configure:4908: result: yes
configure:4912: checking whether the shell understands "+="
configure:4918: result: yes
configure:4953: checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files
configure:4960: result: -r
configure:5029: checking for objdump
configure:5045: found /usr/bin/objdump
configure:5056: result: objdump
configure:5088: checking how to recognize dependent libraries
configure:5290: result: file_magic ^x86 archive import|^x86 DLL
configure:5350: checking for ar
configure:5366: found /usr/bin/ar
configure:5377: result: ar
configure:5455: checking for strip
configure:5471: found /usr/bin/strip
configure:5482: result: strip
configure:5554: checking for ranlib
configure:5570: found /usr/bin/ranlib
configure:5581: result: ranlib
configure:5683: checking command to parse /usr/bin/nm -B output from gcc object
configure:5801: gcc -c -g -O2 conftest.c >&5
configure:5804: $? = 0
configure:5808: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5811: $? = 0
cannot find nm_test_var in conftest.nm
configure:5801: gcc -c -g -O2 conftest.c >&5
configure:5804: $? = 0
configure:5808: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' \> conftest.nm
configure:5811: $? = 0
configure:5865: gcc -o conftest.exe -g -O2 conftest.c conftstm.o >&5
configure:5868: $? = 0
configure:5906: result: ok
configure:6747: checking how to run the C preprocessor
configure:6778: gcc -E conftest.c
configure:6778: $? = 0
configure:6792: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:6792: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6817: result: gcc -E
configure:6837: gcc -E conftest.c
configure:6837: $? = 0
configure:6851: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:6851: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6880: checking for ANSI C header files
configure:6900: gcc -c -g -O2 conftest.c >&5
configure:6900: $? = 0
configure:6973: gcc -o conftest.exe -g -O2 conftest.c >&5
configure:6973: $? = 0
configure:6973: ./conftest.exe
configure:6973: $? = 0
configure:6984: result: yes
configure:6997: checking for sys/types.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for sys/stat.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for stdlib.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for string.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for memory.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for strings.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for inttypes.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for stdint.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:6997: checking for unistd.h
configure:6997: gcc -c -g -O2 conftest.c >&5
configure:6997: $? = 0
configure:6997: result: yes
configure:7011: checking for dlfcn.h
configure:7011: gcc -c -g -O2 conftest.c >&5
configure:7011: $? = 0
configure:7011: result: yes
configure:7198: checking for objdir
configure:7213: result: .libs
configure:7484: checking if gcc supports -fno-rtti -fno-exceptions
configure:7502: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:7506: $? = 0
configure:7519: result: no
configure:7539: checking for gcc option to produce PIC
configure:7824: result: -DDLL_EXPORT -DPIC
configure:7836: checking if gcc PIC flag -DDLL_EXPORT -DPIC works
configure:7854: gcc -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.c >&5
configure:7858: $? = 0
configure:7871: result: yes
configure:7895: checking if gcc static flag -static works
configure:7923: result: no
configure:7938: checking if gcc supports -c -o file.o
configure:7959: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:7963: $? = 0
configure:7985: result: yes
configure:7993: checking if gcc supports -c -o file.o
configure:8040: result: yes
configure:8073: checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:9148: result: yes
configure:9185: checking whether -lc should be explicitly linked in
configure:9193: gcc -c -g -O2 conftest.c >&5
configure:9196: $? = 0
configure:9211: gcc -shared conftest.o -v -o ./conftest -Wl,--enable-auto-image-base -Xlinker --out-implib -Xlinker conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:9214: $? = 1
configure:9228: result: yes
configure:9393: checking dynamic linker characteristics
configure:10070: result: Win32 ld.exe
configure:10177: checking how to hardcode library paths into programs
configure:10202: result: immediate
configure:10742: checking whether stripping libraries is possible
configure:10747: result: yes
configure:10782: checking if libtool supports shared libraries
configure:10784: result: yes
configure:10787: checking whether to build shared libraries
configure:10808: result: yes
configure:10811: checking whether to build static libraries
configure:10815: result: yes
configure:10894: checking for gcc
configure:10921: result: gcc
configure:10943: checking for gcc option to accept ISO C99
configure:11092: gcc -c -g -O2 conftest.c >&5
conftest.c:73: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:127: error: 'newvar' undeclared (first use in this function)
conftest.c:127: error: (Each undeclared identifier is reported only once
conftest.c:127: error: for each function it appears in.)
conftest.c:137: error: 'for' loop initial declaration used outside C99 mode
configure:11092: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:11092: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:11092: $? = 0
configure:11112: result: -std=gnu99
configure:11121: checking whether gcc -std=gnu99 and cc understand -c and -o together
configure:11152: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11156: $? = 0
configure:11162: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11166: $? = 0
configure:11177: cc -c conftest.c >&5
configure:11181: $? = 0
configure:11189: cc -c conftest.c -o conftest2.o >&5
configure:11193: $? = 0
configure:11199: cc -c conftest.c -o conftest2.o >&5
configure:11203: $? = 0
configure:11221: result: yes
configure:11290: checking for ar
configure:11317: result: ar
configure:11474: checking for ld
configure:11501: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:11566: checking for nm
configure:11593: result: /usr/bin/nm -B
configure:11658: checking for ar
configure:11685: result: ar
configure:11750: checking for as
configure:11766: found /usr/bin/as
configure:11777: result: as
configure:11842: checking for dlltool
configure:11858: found /usr/bin/dlltool
configure:11869: result: dlltool
configure:11934: checking for objdump
configure:11961: result: objdump
configure:12026: checking for strip
configure:12053: result: strip
configure:12118: checking for ranlib
configure:12145: result: ranlib
configure:12226: checking for g++
configure:12242: found /usr/bin/g++
configure:12253: result: g++
configure:12280: checking for C++ compiler version
configure:12289: g++ --version >&5
g++ (GCC) 4.3.4 20090804 (release) 1
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12300: $? = 0
configure:12289: g++ -v >&5
Using built-in specs.
Target: i686-pc-cygwin
Configured with: /gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind --with-ecj-jar=/usr/share/java/ecj.jar
Thread model: posix
gcc version 4.3.4 20090804 (release) 1 (GCC)
configure:12300: $? = 0
configure:12289: g++ -V >&5
g++: '-V' option must have argument
configure:12300: $? = 1
configure:12289: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:12300: $? = 1
configure:12304: checking whether we are using the GNU C++ compiler
configure:12323: g++ -c conftest.cpp >&5
configure:12323: $? = 0
configure:12332: result: yes
configure:12341: checking whether g++ accepts -g
configure:12361: g++ -c -g conftest.cpp >&5
configure:12361: $? = 0
configure:12402: result: yes
configure:12427: checking dependency style of g++
configure:12537: result: gcc3
configure:12560: checking how to run the C++ preprocessor
configure:12587: g++ -E conftest.cpp
configure:12587: $? = 0
configure:12601: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:12601: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12626: result: g++ -E
configure:12646: g++ -E conftest.cpp
configure:12646: $? = 0
configure:12660: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:12660: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12828: checking for ld used by g++
configure:12895: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:12902: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld
configure:12917: result: yes
configure:12972: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:13904: result: yes
configure:13932: g++ -c -g -O2 conftest.cpp >&5
configure:13935: $? = 0
configure:14117: checking for g++ option to produce PIC
configure:14439: result: -DDLL_EXPORT -DPIC
configure:14448: checking if g++ PIC flag -DDLL_EXPORT -DPIC works
configure:14466: g++ -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.cpp >&5
configure:14470: $? = 0
configure:14483: result: yes
configure:14504: checking if g++ static flag -static works
configure:14532: result: no
configure:14544: checking if g++ supports -c -o file.o
configure:14565: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:14569: $? = 0
configure:14591: result: yes
configure:14596: checking if g++ supports -c -o file.o
configure:14643: result: yes
configure:14673: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:14701: result: yes
configure:14844: checking dynamic linker characteristics
configure:15455: result: Win32 ld.exe
configure:15508: checking how to hardcode library paths into programs
configure:15533: result: immediate
configure:15581: checking for special C compiler options needed for large files
configure:15626: result: no
configure:15632: checking for _FILE_OFFSET_BITS value needed for large files
configure:15657: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15657: $? = 0
configure:15689: result: no
configure:15780: checking for stdlib.h
configure:15780: result: yes
configure:15780: checking for unistd.h
configure:15780: result: yes
configure:15780: checking for sys/param.h
configure:15780: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15780: $? = 0
configure:15780: result: yes
configure:15800: checking for getpagesize
configure:15800: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:15800: $? = 0
configure:15800: result: yes
configure:15809: checking for working mmap
configure:15956: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:15956: $? = 0
configure:15956: ./conftest.exe
configure:15956: $? = 0
configure:15966: result: yes
configure:15977: checking for malloc in -lmalloc
configure:16002: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lmalloc >&5
conftest.c:35: warning: conflicting types for built-in function 'malloc'
/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:16002: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:16011: result: no
configure:16024: checking for struct stat.st_blksize
configure:16024: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16024: $? = 0
configure:16024: result: yes
configure:16038: checking sys/resource.h usability
configure:16038: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16038: $? = 0
configure:16038: result: yes
configure:16038: checking sys/resource.h presence
configure:16038: gcc -E conftest.c
configure:16038: $? = 0
configure:16038: result: yes
configure:16038: checking for sys/resource.h
configure:16038: result: yes
configure:16050: checking sys/times.h usability
configure:16050: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16050: $? = 0
configure:16050: result: yes
configure:16050: checking sys/times.h presence
configure:16050: gcc -E conftest.c
configure:16050: $? = 0
configure:16050: result: yes
configure:16050: checking for sys/times.h
configure:16050: result: yes
configure:16062: checking malloc.h usability
configure:16062: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16062: $? = 0
configure:16062: result: yes
configure:16062: checking malloc.h presence
configure:16062: gcc -E conftest.c
configure:16062: $? = 0
configure:16062: result: yes
configure:16062: checking for malloc.h
configure:16062: result: yes
configure:16076: checking for mallinfo
configure:16076: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16076: $? = 0
configure:16076: result: yes
configure:16089: checking for isnan
configure:16089: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
conftest.c:56: warning: conflicting types for built-in function 'isnan'
configure:16089: $? = 0
configure:16089: result: yes
configure:16100: checking for getrlimit
configure:16100: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16100: $? = 0
configure:16100: result: yes
configure:16111: checking for gethostname
configure:16111: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16111: $? = 0
configure:16111: result: yes
configure:16185: checking for floor in -lm
configure:16210: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5
conftest.c:48: warning: conflicting types for built-in function 'floor'
configure:16210: $? = 0
configure:16219: result: yes
configure:16254: checking pthread.h usability
configure:16254: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16254: $? = 0
configure:16254: result: yes
configure:16254: checking pthread.h presence
configure:16254: gcc -E conftest.c
configure:16254: $? = 0
configure:16254: result: yes
configure:16254: checking for pthread.h
configure:16254: result: yes
configure:16264: checking for pthread_create in -lpthread
configure:16289: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lpthread -lm >&5
configure:16289: $? = 0
configure:16298: result: yes
configure:16471: checking zlib.h usability
configure:16471: gcc -std=gnu99 -c -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c >&5
configure:16471: $? = 0
configure:16471: result: yes
configure:16471: checking zlib.h presence
configure:16471: gcc -E -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c
configure:16471: $? = 0
configure:16471: result: yes
configure:16471: checking for zlib.h
configure:16471: result: yes
configure:16481: checking for library containing deflate
configure:16512: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lpthread -lm >&5
/tmp/ccmNyuw2.o: In function `main':
/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:56: undefined reference to `_deflate'
collect2: ld returned 1 exit status
configure:16512: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMPILER "gcc -std=gnu99 -g -O2"
| #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1"
| #define USER_NAME "Laurens"
| #define HOST_NAME "Laurens-PC"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:16512: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lz -lpthread -lm >&5
configure:16512: $? = 0
configure:16529: result: -lz
configure:16796: checking for szlib library
configure:16798: result: suppressed
configure:16962: checking hdf5.h usability
configure:16962: gcc -std=gnu99 -c -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c >&5
configure:16962: $? = 0
configure:16962: result: yes
configure:16962: checking hdf5.h presence
configure:16962: gcc -E -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c
configure:16962: $? = 0
configure:16962: result: yes
configure:16962: checking for hdf5.h
configure:16962: result: yes
configure:16972: checking for library containing H5Fopen
configure:17003: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lz -lpthread -lm >&5
/tmp/ccDpTbmu.o: In function `main':
/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:58: undefined reference to `_H5Fopen'
collect2: ld returned 1 exit status
configure:17003: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMPILER "gcc -std=gnu99 -g -O2"
| #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1"
| #define USER_NAME "Laurens"
| #define HOST_NAME "Laurens-PC"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17003: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5 -lz -lpthread -lm >&5
configure:17003: $? = 0
configure:17020: result: -lhdf5
configure:17032: checking for library containing H5DSis_scale
configure:17063: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5 -lz -lpthread -lm >&5
/tmp/ccAFcgm2.o: In function `main':
/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:59: undefined reference to `_H5DSis_scale'
collect2: ld returned 1 exit status
configure:17063: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMPILER "gcc -std=gnu99 -g -O2"
| #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1"
| #define USER_NAME "Laurens"
| #define HOST_NAME "Laurens-PC"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:17063: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5_hl -lhdf5 -lz -lpthread -lm >&5
/tmp/ccSdWMrH.o: In function `main':
/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:59: undefined reference to `_H5DSis_scale'
collect2: ld returned 1 exit status
configure:17063: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.4.7"
| #define PACKAGE_STRING "cdo 1.4.7"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.4.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMPILER "gcc -std=gnu99 -g -O2"
| #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1"
| #define USER_NAME "Laurens"
| #define HOST_NAME "Laurens-PC"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:17080: result: no
configure:17090: Cannot link to hdf5 high level interface! It is required for netCDF4. HDF5 must be built with zlib; the location of zlib must be specified for HDF5 with the --with-zlib option. If HDF5 was also built with szlib, then the location of szlib must also be specified with the --with-szlib option..
configure:17298: checking for NETCDF library
configure:17300: result: suppressed
configure:17464: checking for the JASPER library
configure:17466: result: suppressed
configure:17642: checking for the GRIB_API library
configure:17644: result: suppressed
configure:17650: checking for GRIB support
configure:17667: result: yes
configure:17673: checking for CGRIBEX support
configure:17690: result: yes
configure:17696: checking for SERVICE support
configure:17713: result: yes
configure:17719: checking for EXTRA support
configure:17736: result: yes
configure:17742: checking for IEG support
configure:17759: result: yes
configure:17939: checking for the PROJ library
configure:17941: result: suppressed
configure:17952: checking for build a separate CDI library and link CDO to it
configure:17969: result: no
configure:17993: checking for building an additional static CDO binary
configure:18006: result: no
configure:18162: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by cdo config.status 1.4.7, which was
generated by GNU Autoconf 2.66. Invocation command line was

CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status

on Laurens-PC

config.status:1221: creating Makefile
config.status:1221: creating src/Makefile
config.status:1221: creating contrib/Makefile
config.status:1221: creating cdo.spec
config.status:1221: creating cdo.settings
config.status:1221: creating src/config.h
config.status:1449: executing depfiles commands
config.status:1449: executing libtool commands
configure:20724: === configuring in libcdi (/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/libcdi)
configure:20787: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-ncdf=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' '--with-hdf5=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' '--with-zlib=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' --cache-file=/dev/null --srcdir=.
configure:20806: CDO is configured with the following options:
configure:20825:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-cygwin
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=.exe
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_isnan=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_pthread_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=i686-pc-cygwin
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_lib_pthread_pthread_create=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=dlltool
ac_cv_prog_ac_ct_LD=/usr/i686-pc-cygwin/bin/ld.exe
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=no
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_deflate=-lz
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_archive_cmds_need_lc=yes
lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
lt_cv_file_magic_cmd=func_win32_libid
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/i686-pc-cygwin/bin/ld.exe
lt_cv_path_LDCXX=/usr/i686-pc-cygwin/bin/ld.exe
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=8192

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run tar'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run autoconf'
AUTOHEADER='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run autoheader'
AUTOMAKE='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run automake-1.11'
AWK='gawk'
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS=' -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='cygpath -w'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='dlltool'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='yes'
ENABLE_EXTRA='yes'
ENABLE_GRIB='yes'
ENABLE_IEG='yes'
ENABLE_SERVICE='yes'
EXEEXT='.exe'
FCFLAGS=''
FGREP='/usr/bin/grep -F'
GREP='/usr/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LDFLAGS=''
HDF5_INCLUDE=' -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include'
HDF5_LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -lhdf5'
HOST_NAME='Laurens-PC'
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LDFLAGS=''
LD='/usr/i686-pc-cygwin/bin/ld.exe'
LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib'
LIBOBJS=''
LIBS='-lhdf5 -lz -lpthread -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
NETCDF_INCLUDE=''
NETCDF_LDFLAGS=''
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.4.7'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.4.7'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='i686-pc-cygwin'
SZLIB_INCLUDE=''
SZLIB_LDFLAGS=''
THREADS_INCLUDE=''
THREADS_LDFLAGS=' -lpthread'
USER_NAME='Laurens'
VERSION='1.4.7'
ZLIB_LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -lz'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE='#'
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-cygwin'
build_alias=''
build_cpu='i686'
build_os='cygwin'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='i686-pc-cygwin'
host_alias=''
host_cpu='i686'
host_os='cygwin'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/usr/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.4.7"
#define PACKAGE_STRING "cdo 1.4.7"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.4.7"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_MALLINFO 1
#define HAVE_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMPILER "gcc -std=gnu99 -g -O2"
#define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1"
#define USER_NAME "Laurens"
#define HOST_NAME "Laurens-PC"
#define SYSTEM_TYPE "i686-pc-cygwin"
#define HAVE_LIBM 1
#define HAVE_PTHREAD_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1

configure: exit 0
    (1-1/1)