This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.4.7, which was generated by GNU Autoconf 2.66. Invocation command line was $ ./configure --with-ncdf=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/ --with-hdf5=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/ --with-zlib=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/ ## --------- ## ## Platform. ## ## --------- ## hostname = Laurens-PC uname -m = i686 uname -r = 1.7.7(0.230/5/3) uname -s = CYGWIN_NT-6.0 uname -v = 2010-08-31 09:58 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live PATH: /cygdrive/c/Windows/system32 PATH: /cygdrive/c/Windows PATH: /cygdrive/c/Windows/System32/Wbem PATH: /cygdrive/c/Program Files/Common Files/Roxio Shared/DLLShared/ PATH: /cygdrive/c/Program Files/Common Files/Roxio Shared/9.0/DLLShared/ PATH: /cygdrive/c/Program Files/Microsoft Visual Studio 10.0/VC/bin PATH: /cygdrive/c/Program Files/Microsoft Visual Studio 10.0/Common7/IDE PATH: /cygdrive/c/Program Files/R/R-2.11.1/bin PATH: /cygdrive/c/Program Files/Windows Live/Shared PATH: /cygdrive/c/Program Files/QuickTime/QTSystem/ PATH: /cygdrive/c/Users/Laurens/Desktop/CDO ## ----------- ## ## Core tests. ## ## ----------- ## configure:2483: checking build system type configure:2497: result: i686-pc-cygwin configure:2517: checking host system type configure:2530: result: i686-pc-cygwin configure:2568: checking for a BSD-compatible install configure:2636: result: /usr/bin/install -c configure:2647: checking whether build environment is sane configure:2697: result: yes configure:2838: checking for a thread-safe mkdir -p configure:2877: result: /usr/bin/mkdir -p configure:2890: checking for gawk configure:2906: found /usr/bin/gawk configure:2917: result: gawk configure:2928: checking whether make sets $(MAKE) configure:2950: result: yes configure:3033: checking whether to enable maintainer-specific portions of Makefiles configure:3042: result: no configure:3057: setting up libtool configure:3105: checking how to print strings configure:3132: result: printf configure:3165: checking for style of include used by make configure:3193: result: GNU configure:3263: checking for gcc configure:3279: found /usr/bin/gcc configure:3290: result: gcc configure:3519: checking for C compiler version configure:3528: gcc --version >&5 gcc (GCC) 4.3.4 20090804 (release) 1 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3539: $? = 0 configure:3528: gcc -v >&5 Using built-in specs. Target: i686-pc-cygwin Configured with: /gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind --with-ecj-jar=/usr/share/java/ecj.jar Thread model: posix gcc version 4.3.4 20090804 (release) 1 (GCC) configure:3539: $? = 0 configure:3528: gcc -V >&5 gcc: '-V' option must have argument configure:3539: $? = 1 configure:3528: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3539: $? = 1 configure:3559: checking whether the C compiler works configure:3581: gcc conftest.c >&5 configure:3585: $? = 0 configure:3633: result: yes configure:3636: checking for C compiler default output file name configure:3638: result: a.exe configure:3644: checking for suffix of executables configure:3651: gcc -o conftest.exe conftest.c >&5 configure:3655: $? = 0 configure:3677: result: .exe configure:3699: checking whether we are cross compiling configure:3707: gcc -o conftest.exe conftest.c >&5 configure:3711: $? = 0 configure:3718: ./conftest.exe configure:3722: $? = 0 configure:3737: result: no configure:3742: checking for suffix of object files configure:3764: gcc -c conftest.c >&5 configure:3768: $? = 0 configure:3789: result: o configure:3793: checking whether we are using the GNU C compiler configure:3812: gcc -c conftest.c >&5 configure:3812: $? = 0 configure:3821: result: yes configure:3830: checking whether gcc accepts -g configure:3850: gcc -c -g conftest.c >&5 configure:3850: $? = 0 configure:3891: result: yes configure:3908: checking for gcc option to accept ISO C89 configure:3972: gcc -c -g -O2 conftest.c >&5 configure:3972: $? = 0 configure:3985: result: none needed configure:4007: checking dependency style of gcc configure:4117: result: gcc3 configure:4132: checking for a sed that does not truncate output configure:4196: result: /usr/bin/sed configure:4214: checking for grep that handles long lines and -e configure:4272: result: /usr/bin/grep configure:4277: checking for egrep configure:4339: result: /usr/bin/grep -E configure:4344: checking for fgrep configure:4406: result: /usr/bin/grep -F configure:4441: checking for ld used by gcc configure:4508: result: /usr/i686-pc-cygwin/bin/ld.exe configure:4515: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:4530: result: yes configure:4542: checking for BSD- or MS-compatible name lister (nm) configure:4591: result: /usr/bin/nm -B configure:4721: checking the name lister (/usr/bin/nm -B) interface configure:4728: gcc -c -g -O2 conftest.c >&5 configure:4731: /usr/bin/nm -B "conftest.o" configure:4734: output 00000000 b .bss 00000000 d .data 00000000 N .debug_abbrev 00000000 N .debug_info 00000000 N .debug_line 00000000 N .debug_pubnames 00000000 t .text 00000000 B _some_variable configure:4741: result: BSD nm configure:4744: checking whether ln -s works configure:4748: result: yes configure:4756: checking the maximum length of command line arguments configure:4881: result: 8192 configure:4898: checking whether the shell understands some XSI constructs configure:4908: result: yes configure:4912: checking whether the shell understands "+=" configure:4918: result: yes configure:4953: checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files configure:4960: result: -r configure:5029: checking for objdump configure:5045: found /usr/bin/objdump configure:5056: result: objdump configure:5088: checking how to recognize dependent libraries configure:5290: result: file_magic ^x86 archive import|^x86 DLL configure:5350: checking for ar configure:5366: found /usr/bin/ar configure:5377: result: ar configure:5455: checking for strip configure:5471: found /usr/bin/strip configure:5482: result: strip configure:5554: checking for ranlib configure:5570: found /usr/bin/ranlib configure:5581: result: ranlib configure:5683: checking command to parse /usr/bin/nm -B output from gcc object configure:5801: gcc -c -g -O2 conftest.c >&5 configure:5804: $? = 0 configure:5808: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5811: $? = 0 cannot find nm_test_var in conftest.nm configure:5801: gcc -c -g -O2 conftest.c >&5 configure:5804: $? = 0 configure:5808: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' \> conftest.nm configure:5811: $? = 0 configure:5865: gcc -o conftest.exe -g -O2 conftest.c conftstm.o >&5 configure:5868: $? = 0 configure:5906: result: ok configure:6747: checking how to run the C preprocessor configure:6778: gcc -E conftest.c configure:6778: $? = 0 configure:6792: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6792: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | /* end confdefs.h. */ | #include configure:6817: result: gcc -E configure:6837: gcc -E conftest.c configure:6837: $? = 0 configure:6851: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6851: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | /* end confdefs.h. */ | #include configure:6880: checking for ANSI C header files configure:6900: gcc -c -g -O2 conftest.c >&5 configure:6900: $? = 0 configure:6973: gcc -o conftest.exe -g -O2 conftest.c >&5 configure:6973: $? = 0 configure:6973: ./conftest.exe configure:6973: $? = 0 configure:6984: result: yes configure:6997: checking for sys/types.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for sys/stat.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for stdlib.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for string.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for memory.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for strings.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for inttypes.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for stdint.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:6997: checking for unistd.h configure:6997: gcc -c -g -O2 conftest.c >&5 configure:6997: $? = 0 configure:6997: result: yes configure:7011: checking for dlfcn.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7198: checking for objdir configure:7213: result: .libs configure:7484: checking if gcc supports -fno-rtti -fno-exceptions configure:7502: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:7506: $? = 0 configure:7519: result: no configure:7539: checking for gcc option to produce PIC configure:7824: result: -DDLL_EXPORT -DPIC configure:7836: checking if gcc PIC flag -DDLL_EXPORT -DPIC works configure:7854: gcc -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.c >&5 configure:7858: $? = 0 configure:7871: result: yes configure:7895: checking if gcc static flag -static works configure:7923: result: no configure:7938: checking if gcc supports -c -o file.o configure:7959: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:7963: $? = 0 configure:7985: result: yes configure:7993: checking if gcc supports -c -o file.o configure:8040: result: yes configure:8073: checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:9148: result: yes configure:9185: checking whether -lc should be explicitly linked in configure:9193: gcc -c -g -O2 conftest.c >&5 configure:9196: $? = 0 configure:9211: gcc -shared conftest.o -v -o ./conftest -Wl,--enable-auto-image-base -Xlinker --out-implib -Xlinker conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:9214: $? = 1 configure:9228: result: yes configure:9393: checking dynamic linker characteristics configure:10070: result: Win32 ld.exe configure:10177: checking how to hardcode library paths into programs configure:10202: result: immediate configure:10742: checking whether stripping libraries is possible configure:10747: result: yes configure:10782: checking if libtool supports shared libraries configure:10784: result: yes configure:10787: checking whether to build shared libraries configure:10808: result: yes configure:10811: checking whether to build static libraries configure:10815: result: yes configure:10894: checking for gcc configure:10921: result: gcc configure:10943: checking for gcc option to accept ISO C99 configure:11092: gcc -c -g -O2 conftest.c >&5 conftest.c:73: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127: error: 'newvar' undeclared (first use in this function) conftest.c:127: error: (Each undeclared identifier is reported only once conftest.c:127: error: for each function it appears in.) conftest.c:137: error: 'for' loop initial declaration used outside C99 mode configure:11092: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11092: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11092: $? = 0 configure:11112: result: -std=gnu99 configure:11121: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11152: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11156: $? = 0 configure:11162: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11166: $? = 0 configure:11177: cc -c conftest.c >&5 configure:11181: $? = 0 configure:11189: cc -c conftest.c -o conftest2.o >&5 configure:11193: $? = 0 configure:11199: cc -c conftest.c -o conftest2.o >&5 configure:11203: $? = 0 configure:11221: result: yes configure:11290: checking for ar configure:11317: result: ar configure:11474: checking for ld configure:11501: result: /usr/i686-pc-cygwin/bin/ld.exe configure:11566: checking for nm configure:11593: result: /usr/bin/nm -B configure:11658: checking for ar configure:11685: result: ar configure:11750: checking for as configure:11766: found /usr/bin/as configure:11777: result: as configure:11842: checking for dlltool configure:11858: found /usr/bin/dlltool configure:11869: result: dlltool configure:11934: checking for objdump configure:11961: result: objdump configure:12026: checking for strip configure:12053: result: strip configure:12118: checking for ranlib configure:12145: result: ranlib configure:12226: checking for g++ configure:12242: found /usr/bin/g++ configure:12253: result: g++ configure:12280: checking for C++ compiler version configure:12289: g++ --version >&5 g++ (GCC) 4.3.4 20090804 (release) 1 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12300: $? = 0 configure:12289: g++ -v >&5 Using built-in specs. Target: i686-pc-cygwin Configured with: /gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind --with-ecj-jar=/usr/share/java/ecj.jar Thread model: posix gcc version 4.3.4 20090804 (release) 1 (GCC) configure:12300: $? = 0 configure:12289: g++ -V >&5 g++: '-V' option must have argument configure:12300: $? = 1 configure:12289: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:12300: $? = 1 configure:12304: checking whether we are using the GNU C++ compiler configure:12323: g++ -c conftest.cpp >&5 configure:12323: $? = 0 configure:12332: result: yes configure:12341: checking whether g++ accepts -g configure:12361: g++ -c -g conftest.cpp >&5 configure:12361: $? = 0 configure:12402: result: yes configure:12427: checking dependency style of g++ configure:12537: result: gcc3 configure:12560: checking how to run the C++ preprocessor configure:12587: g++ -E conftest.cpp configure:12587: $? = 0 configure:12601: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12601: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12626: result: g++ -E configure:12646: g++ -E conftest.cpp configure:12646: $? = 0 configure:12660: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12660: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12828: checking for ld used by g++ configure:12895: result: /usr/i686-pc-cygwin/bin/ld.exe configure:12902: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:12917: result: yes configure:12972: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:13904: result: yes configure:13932: g++ -c -g -O2 conftest.cpp >&5 configure:13935: $? = 0 configure:14117: checking for g++ option to produce PIC configure:14439: result: -DDLL_EXPORT -DPIC configure:14448: checking if g++ PIC flag -DDLL_EXPORT -DPIC works configure:14466: g++ -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.cpp >&5 configure:14470: $? = 0 configure:14483: result: yes configure:14504: checking if g++ static flag -static works configure:14532: result: no configure:14544: checking if g++ supports -c -o file.o configure:14565: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14569: $? = 0 configure:14591: result: yes configure:14596: checking if g++ supports -c -o file.o configure:14643: result: yes configure:14673: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:14701: result: yes configure:14844: checking dynamic linker characteristics configure:15455: result: Win32 ld.exe configure:15508: checking how to hardcode library paths into programs configure:15533: result: immediate configure:15581: checking for special C compiler options needed for large files configure:15626: result: no configure:15632: checking for _FILE_OFFSET_BITS value needed for large files configure:15657: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15657: $? = 0 configure:15689: result: no configure:15780: checking for stdlib.h configure:15780: result: yes configure:15780: checking for unistd.h configure:15780: result: yes configure:15780: checking for sys/param.h configure:15780: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15780: $? = 0 configure:15780: result: yes configure:15800: checking for getpagesize configure:15800: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:15800: $? = 0 configure:15800: result: yes configure:15809: checking for working mmap configure:15956: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:15956: $? = 0 configure:15956: ./conftest.exe configure:15956: $? = 0 configure:15966: result: yes configure:15977: checking for malloc in -lmalloc configure:16002: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lmalloc >&5 conftest.c:35: warning: conflicting types for built-in function 'malloc' /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:16002: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:16011: result: no configure:16024: checking for struct stat.st_blksize configure:16024: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16024: $? = 0 configure:16024: result: yes configure:16038: checking sys/resource.h usability configure:16038: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16038: $? = 0 configure:16038: result: yes configure:16038: checking sys/resource.h presence configure:16038: gcc -E conftest.c configure:16038: $? = 0 configure:16038: result: yes configure:16038: checking for sys/resource.h configure:16038: result: yes configure:16050: checking sys/times.h usability configure:16050: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16050: $? = 0 configure:16050: result: yes configure:16050: checking sys/times.h presence configure:16050: gcc -E conftest.c configure:16050: $? = 0 configure:16050: result: yes configure:16050: checking for sys/times.h configure:16050: result: yes configure:16062: checking malloc.h usability configure:16062: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16062: $? = 0 configure:16062: result: yes configure:16062: checking malloc.h presence configure:16062: gcc -E conftest.c configure:16062: $? = 0 configure:16062: result: yes configure:16062: checking for malloc.h configure:16062: result: yes configure:16076: checking for mallinfo configure:16076: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:16076: $? = 0 configure:16076: result: yes configure:16089: checking for isnan configure:16089: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 conftest.c:56: warning: conflicting types for built-in function 'isnan' configure:16089: $? = 0 configure:16089: result: yes configure:16100: checking for getrlimit configure:16100: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:16100: $? = 0 configure:16100: result: yes configure:16111: checking for gethostname configure:16111: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:16111: $? = 0 configure:16111: result: yes configure:16185: checking for floor in -lm configure:16210: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 conftest.c:48: warning: conflicting types for built-in function 'floor' configure:16210: $? = 0 configure:16219: result: yes configure:16254: checking pthread.h usability configure:16254: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16254: $? = 0 configure:16254: result: yes configure:16254: checking pthread.h presence configure:16254: gcc -E conftest.c configure:16254: $? = 0 configure:16254: result: yes configure:16254: checking for pthread.h configure:16254: result: yes configure:16264: checking for pthread_create in -lpthread configure:16289: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lpthread -lm >&5 configure:16289: $? = 0 configure:16298: result: yes configure:16471: checking zlib.h usability configure:16471: gcc -std=gnu99 -c -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c >&5 configure:16471: $? = 0 configure:16471: result: yes configure:16471: checking zlib.h presence configure:16471: gcc -E -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c configure:16471: $? = 0 configure:16471: result: yes configure:16471: checking for zlib.h configure:16471: result: yes configure:16481: checking for library containing deflate configure:16512: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lpthread -lm >&5 /tmp/ccmNyuw2.o: In function `main': /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:56: undefined reference to `_deflate' collect2: ld returned 1 exit status configure:16512: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1" | #define USER_NAME "Laurens" | #define HOST_NAME "Laurens-PC" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16512: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lz -lpthread -lm >&5 configure:16512: $? = 0 configure:16529: result: -lz configure:16796: checking for szlib library configure:16798: result: suppressed configure:16962: checking hdf5.h usability configure:16962: gcc -std=gnu99 -c -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c >&5 configure:16962: $? = 0 configure:16962: result: yes configure:16962: checking hdf5.h presence configure:16962: gcc -E -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include conftest.c configure:16962: $? = 0 configure:16962: result: yes configure:16962: checking for hdf5.h configure:16962: result: yes configure:16972: checking for library containing H5Fopen configure:17003: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lz -lpthread -lm >&5 /tmp/ccDpTbmu.o: In function `main': /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:58: undefined reference to `_H5Fopen' collect2: ld returned 1 exit status configure:17003: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1" | #define USER_NAME "Laurens" | #define HOST_NAME "Laurens-PC" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:17003: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5 -lz -lpthread -lm >&5 configure:17003: $? = 0 configure:17020: result: -lhdf5 configure:17032: checking for library containing H5DSis_scale configure:17063: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5 -lz -lpthread -lm >&5 /tmp/ccAFcgm2.o: In function `main': /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:59: undefined reference to `_H5DSis_scale' collect2: ld returned 1 exit status configure:17063: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1" | #define USER_NAME "Laurens" | #define HOST_NAME "Laurens-PC" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:17063: gcc -std=gnu99 -o conftest.exe -g -O2 -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib conftest.c -lhdf5_hl -lhdf5 -lz -lpthread -lm >&5 /tmp/ccSdWMrH.o: In function `main': /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/conftest.c:59: undefined reference to `_H5DSis_scale' collect2: ld returned 1 exit status configure:17063: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.7" | #define PACKAGE_STRING "cdo 1.4.7" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.7" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1" | #define USER_NAME "Laurens" | #define HOST_NAME "Laurens-PC" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:17080: result: no configure:17090: Cannot link to hdf5 high level interface! It is required for netCDF4. HDF5 must be built with zlib; the location of zlib must be specified for HDF5 with the --with-zlib option. If HDF5 was also built with szlib, then the location of szlib must also be specified with the --with-szlib option.. configure:17298: checking for NETCDF library configure:17300: result: suppressed configure:17464: checking for the JASPER library configure:17466: result: suppressed configure:17642: checking for the GRIB_API library configure:17644: result: suppressed configure:17650: checking for GRIB support configure:17667: result: yes configure:17673: checking for CGRIBEX support configure:17690: result: yes configure:17696: checking for SERVICE support configure:17713: result: yes configure:17719: checking for EXTRA support configure:17736: result: yes configure:17742: checking for IEG support configure:17759: result: yes configure:17939: checking for the PROJ library configure:17941: result: suppressed configure:17952: checking for build a separate CDI library and link CDO to it configure:17969: result: no configure:17993: checking for building an additional static CDO binary configure:18006: result: no configure:18162: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.4.7, which was generated by GNU Autoconf 2.66. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Laurens-PC config.status:1221: creating Makefile config.status:1221: creating src/Makefile config.status:1221: creating contrib/Makefile config.status:1221: creating cdo.spec config.status:1221: creating cdo.settings config.status:1221: creating src/config.h config.status:1449: executing depfiles commands config.status:1449: executing libtool commands configure:20724: === configuring in libcdi (/cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/libcdi) configure:20787: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-ncdf=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' '--with-hdf5=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' '--with-zlib=/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7/' --cache-file=/dev/null --srcdir=. configure:20806: CDO is configured with the following options: configure:20825: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-cygwin ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext=.exe ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_isnan=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=i686-pc-cygwin ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=dlltool ac_cv_prog_ac_ct_LD=/usr/i686-pc-cygwin/bin/ld.exe ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=no ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_deflate=-lz ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_archive_cmds_need_lc=yes lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd=func_win32_libid lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_LDCXX=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=8192 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run autoconf' AUTOHEADER='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run autoheader' AUTOMAKE='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run automake-1.11' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS=' -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='cygpath -w' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='dlltool' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_IEG='yes' ENABLE_SERVICE='yes' EXEEXT='.exe' FCFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LDFLAGS='' HDF5_INCLUDE=' -I/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//include' HDF5_LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -lhdf5' HOST_NAME='Laurens-PC' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LDFLAGS='' LD='/usr/i686-pc-cygwin/bin/ld.exe' LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib' LIBOBJS='' LIBS='-lhdf5 -lz -lpthread -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/missing --run makeinfo' MKDIR_P='/usr/bin/mkdir -p' NETCDF_INCLUDE='' NETCDF_LDFLAGS='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.4.7' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.4.7' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='i686-pc-cygwin' SZLIB_INCLUDE='' SZLIB_LDFLAGS='' THREADS_INCLUDE='' THREADS_LDFLAGS=' -lpthread' USER_NAME='Laurens' VERSION='1.4.7' ZLIB_LDFLAGS=' -L/cygdrive/c/users/laurens/desktop/oops/libs4cdo-0.0.7.tar/libs4cdo-0.0.7/libs4cdo-0.0.7//lib -lz' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='#' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='i686-pc-cygwin' build_alias='' build_cpu='i686' build_os='cygwin' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='i686-pc-cygwin' host_alias='' host_cpu='i686' host_os='cygwin' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /cygdrive/c/users/laurens/desktop/oops/cdo-1.4.7.tar/cdo-1.4.7/cdo-1.4.7/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/usr/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.4.7" #define PACKAGE_STRING "cdo 1.4.7" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.4.7" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MALLINFO 1 #define HAVE_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMPILER "gcc -std=gnu99 -g -O2" #define COMP_VERSION "gcc (GCC) 4.3.4 20090804 (release) 1" #define USER_NAME "Laurens" #define HOST_NAME "Laurens-PC" #define SYSTEM_TYPE "i686-pc-cygwin" #define HAVE_LIBM 1 #define HAVE_PTHREAD_H 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 configure: exit 0