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gcc 13 with netcdf 4.7.4 and hdf5 1.10.1 fails with ./co... ยป config.log

config.log - Rob Kudyba, 2024-07-11 19:21

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 2.4.2, which was
generated by GNU Autoconf 2.72. Invocation command line was

$ ./configure --prefix=/path/to/cdo/2.4.2 --with-netcdf=/path/to/netcdf-c-4.7.4 --with-hdf5=/cm/shared/apps/hdf5/1.10.1

## --------- ##
## Platform. ##
## --------- ##

hostname = g176
uname -m = x86_64
uname -r = 4.18.0-193.el8.x86_64
uname -s = Linux
uname -v = #1 SMP Fri Mar 27 14:35:58 UTC 2020

/usr/bin/uname -p = x86_64
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /path/to/gcc/gcc-13.0.1/bin/
PATH: /path/to/netcdf-c-4.7.4/bin/
PATH: /cm/shared/apps/hdf5/1.10.1/bin/
PATH: /path/to/anaconda3-2021.11/condabin/
PATH: /cm/shared/apps/slurm/current/sbin/
PATH: /cm/shared/apps/slurm/current/bin/
PATH: /usr/local/bin/
PATH: /usr/bin/
PATH: /usr/local/sbin/
PATH: /usr/sbin/
PATH: /opt/dell/srvadmin/bin/
PATH: /path/to/me/.local/bin/
PATH: /path/to/me/bin/


## ----------- ##
## Core tests. ##
## ----------- ##

configure:3341: looking for aux files: tap-driver.sh ltmain.sh compile ar-lib missing install-sh config.guess config.sub
configure:3354: trying ./config/
configure:3383: ./config/tap-driver.sh found
configure:3383: ./config/ltmain.sh found
configure:3383: ./config/compile found
configure:3383: ./config/ar-lib found
configure:3383: ./config/missing found
configure:3365: ./config/install-sh found
configure:3383: ./config/config.guess found
configure:3383: ./config/config.sub found
configure:3510: checking build system type
configure:3526: result: x86_64-pc-linux-gnu
configure:3546: checking host system type
configure:3561: result: x86_64-pc-linux-gnu
configure:3601: checking for a BSD-compatible install
configure:3675: result: /usr/bin/install -c
configure:3686: checking whether build environment is sane
configure:3741: result: yes
configure:3902: checking for a race-free mkdir -p
configure:3945: result: /usr/bin/mkdir -p
configure:3952: checking for gawk
configure:3973: found /usr/bin/gawk
configure:3985: result: gawk
configure:3996: checking whether make sets $(MAKE)
configure:4020: result: yes
configure:4050: checking whether make supports nested variables
configure:4069: result: yes
configure:4209: checking whether to enable maintainer-specific portions of Makefiles
configure:4220: result: no
configure:4248: checking whether make supports the include directive
configure:4263: make -f confmf.GNU && cat confinc.out
this is the am__doit target
configure:4266: $? = 0
configure:4285: result: yes (GNU style)
configure:4362: checking for gcc
configure:4383: found /path/to/gcc/gcc-13.0.1/bin/gcc
configure:4395: result: gcc
configure:4754: checking for C compiler version
configure:4763: gcc --version >&5
gcc (GCC) 13.0.1 20230412 (experimental)
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4774: $? = 0
configure:4763: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.0.1 20230412 (experimental) (GCC)
configure:4774: $? = 0
configure:4763: gcc -V >&5
gcc: error: unrecognized command-line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4774: $? = 1
configure:4763: gcc -qversion >&5
gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:4774: $? = 1
configure:4763: gcc -version >&5
gcc: error: unrecognized command-line option '-version'
gcc: fatal error: no input files
compilation terminated.
configure:4774: $? = 1
configure:4794: checking whether the C compiler works
configure:4816: gcc conftest.c >&5
configure:4820: $? = 0
configure:4871: result: yes
configure:4875: checking for C compiler default output file name
configure:4877: result: a.out
configure:4883: checking for suffix of executables
configure:4890: gcc -o conftest conftest.c >&5
configure:4894: $? = 0
configure:4918: result:
configure:4942: checking whether we are cross compiling
configure:4950: gcc -o conftest conftest.c >&5
configure:4954: $? = 0
configure:4961: ./conftest
configure:4965: $? = 0
configure:4980: result: no
configure:4986: checking for suffix of object files
configure:5009: gcc -c conftest.c >&5
configure:5013: $? = 0
configure:5037: result: o
configure:5041: checking whether the compiler supports GNU C
configure:5061: gcc -c conftest.c >&5
configure:5061: $? = 0
configure:5073: result: yes
configure:5084: checking whether gcc accepts -g
configure:5105: gcc -c -g conftest.c >&5
configure:5105: $? = 0
configure:5152: result: yes
configure:5172: checking for gcc option to enable C11 features
configure:5187: gcc -c -g -O2 conftest.c >&5
configure:5187: $? = 0
configure:5206: result: none needed
configure:5330: checking whether gcc understands -c and -o together
configure:5353: gcc -c conftest.c -o conftest2.o
configure:5356: $? = 0
configure:5353: gcc -c conftest.c -o conftest2.o
configure:5356: $? = 0
configure:5369: result: yes
configure:5388: checking dependency style of gcc
configure:5501: result: gcc3
configure:5573: checking for ar
configure:5594: found /usr/bin/ar
configure:5606: result: ar
configure:5632: checking the archiver (ar) interface
configure:5649: gcc -c -g -O2 conftest.c >&5
configure:5649: $? = 0
configure:5652: ar cru libconftest.a conftest.o >&5
configure:5655: $? = 0
configure:5684: result: ar
configure:5705: setting up libtool
configure:5754: checking how to print strings
configure:5781: result: printf
configure:5802: checking for a sed that does not truncate output
configure:5874: result: /usr/bin/sed
configure:5892: checking for grep that handles long lines and -e
configure:5958: result: /usr/bin/grep
configure:5963: checking for egrep
configure:6033: result: /usr/bin/grep -E
configure:6040: checking for fgrep
configure:6110: result: /usr/bin/grep -F
configure:6147: checking for ld used by gcc
configure:6216: result: /usr/bin/ld
configure:6223: checking if the linker (/usr/bin/ld) is GNU ld
configure:6240: result: yes
configure:6252: checking for BSD- or MS-compatible name lister (nm)
configure:6308: result: /usr/bin/nm -B
configure:6450: checking the name lister (/usr/bin/nm -B) interface
configure:6458: gcc -c -g -O2 conftest.c >&5
configure:6461: /usr/bin/nm -B "conftest.o"
configure:6464: output
0000000000000000 B some_variable
configure:6472: result: BSD nm
configure:6475: checking whether ln -s works
configure:6479: result: yes
configure:6487: checking the maximum length of command line arguments
configure:6620: result: 3458764513820540925
configure:6668: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:6710: result: func_convert_file_noop
configure:6717: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:6739: result: func_convert_file_noop
configure:6746: checking for /usr/bin/ld option to reload object files
configure:6755: result: -r
configure:6835: checking for file
configure:6856: found /usr/bin/file
configure:6868: result: file
configure:6945: checking for objdump
configure:6966: found /usr/bin/objdump
configure:6978: result: objdump
configure:7010: checking how to recognize dependent libraries
configure:7212: result: pass_all
configure:7303: checking for dlltool
configure:7339: result: no
configure:7369: checking how to associate runtime and link libraries
configure:7398: result: printf %s\n
configure:7550: checking for archiver @FILE support
configure:7568: gcc -c -g -O2 conftest.c >&5
configure:7568: $? = 0
configure:7572: ar cr libconftest.a @conftest.lst >&5
configure:7575: $? = 0
configure:7580: ar cr libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:7583: $? = 1
configure:7596: result: @
configure:7660: checking for strip
configure:7681: found /usr/bin/strip
configure:7693: result: strip
configure:7771: checking for ranlib
configure:7792: found /usr/bin/ranlib
configure:7804: result: ranlib
configure:7906: checking command to parse /usr/bin/nm -B output from gcc object
configure:8060: gcc -c -g -O2 conftest.c >&5
configure:8063: $? = 0
configure:8067: /usr/bin/nm -B conftest.o \| /usr/bin/sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | /usr/bin/sed '/ __gnu_lto/d' \> conftest.nm
configure:8070: $? = 0
configure:8136: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:8139: $? = 0
configure:8178: result: ok
configure:8225: checking for sysroot
configure:8257: result: no
configure:8264: checking for a working dd
configure:8309: result: /usr/bin/dd
configure:8313: checking how to truncate binary pipes
configure:8330: result: /usr/bin/dd bs=4096 count=1
configure:8467: gcc -c -g -O2 conftest.c >&5
configure:8470: $? = 0
configure:8670: checking for mt
configure:8706: result: no
configure:8726: checking if : is a manifest tool
configure:8733: : '-?'
configure:8742: result: no
configure:9481: checking for stdio.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for stdlib.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for string.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for inttypes.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for stdint.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for strings.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for sys/stat.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for sys/types.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for unistd.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9481: checking for sys/param.h
configure:9481: gcc -c -g -O2 conftest.c >&5
configure:9481: $? = 0
configure:9481: result: yes
configure:9506: checking for dlfcn.h
configure:9506: gcc -c -g -O2 conftest.c >&5
configure:9506: $? = 0
configure:9506: result: yes
configure:9771: checking for objdir
configure:9788: result: .libs
configure:10054: checking if gcc supports -fno-rtti -fno-exceptions
configure:10073: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command-line option '-fno-rtti' is valid for C++/D/ObjC++ but not for C
configure:10077: $? = 0
configure:10091: result: no
configure:10449: checking for gcc option to produce PIC
configure:10458: result: -fPIC -DPIC
configure:10466: checking if gcc PIC flag -fPIC -DPIC works
configure:10485: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:10489: $? = 0
configure:10503: result: yes
configure:10532: checking if gcc static flag -static works
configure:10562: result: no
configure:10577: checking if gcc supports -c -o file.o
configure:10599: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:10603: $? = 0
configure:10626: result: yes
configure:10634: checking if gcc supports -c -o file.o
configure:10683: result: yes
configure:10716: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:11989: result: yes
configure:12026: checking whether -lc should be explicitly linked in
configure:12035: gcc -c -g -O2 conftest.c >&5
configure:12038: $? = 0
configure:12053: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:12056: $? = 0
configure:12071: result: no
configure:12231: checking dynamic linker characteristics
configure:12813: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:12813: $? = 0
configure:13053: result: GNU/Linux ld.so
configure:13175: checking how to hardcode library paths into programs
configure:13200: result: immediate
configure:13800: checking whether stripping libraries is possible
configure:13809: result: yes
configure:13851: checking if libtool supports shared libraries
configure:13853: result: yes
configure:13856: checking whether to build shared libraries
configure:13881: result: yes
configure:13884: checking whether to build static libraries
configure:13888: result: yes
configure:13964: checking for a Python interpreter with version >= 3.6
configure:13982: python -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '3.6'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex)
configure:13985: $? = 0
configure:13993: result: python
configure:14001: checking for python
configure:14024: found /usr/bin/python
configure:14037: result: /usr/bin/python
configure:14054: checking for python version
configure:14063: result: 3.6
configure:14068: checking for python platform
configure:14077: result: linux
configure:14140: checking for GNU default python prefix
configure:14142: result: ${prefix}
configure:14210: checking for GNU default python exec_prefix
configure:14212: result: ${exec_prefix}
configure:14245: checking for python script directory (pythondir)
configure:14281: result: ${PYTHON_PREFIX}/lib/python3.6/site-packages
configure:14289: checking for python extension module directory (pyexecdir)
configure:14325: result: ${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages
configure:14398: checking for bash
configure:14434: result: /bin/sh
configure:14507: checking for gcc
configure:14540: result: gcc
configure:14611: checking for g++
configure:14632: found /path/to/gcc/gcc-13.0.1/bin/g++
configure:14644: result: g++
configure:14798: checking for C++ compiler version
configure:14807: g++ --version >&5
g++ (GCC) 13.0.1 20230412 (experimental)
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:14818: $? = 0
configure:14807: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.0.1 20230412 (experimental) (GCC)
configure:14818: $? = 0
configure:14807: g++ -V >&5
g++: error: unrecognized command-line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:14818: $? = 1
configure:14807: g++ -qversion >&5
g++: error: unrecognized command-line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:14818: $? = 1
configure:14822: checking whether the compiler supports GNU C++
configure:14842: g++ -c conftest.cpp >&5
configure:14842: $? = 0
configure:14854: result: yes
configure:14865: checking whether g++ accepts -g
configure:14886: g++ -c -g conftest.cpp >&5
configure:14886: $? = 0
configure:14933: result: yes
configure:14953: checking for g++ option to enable C++11 features
configure:14968: g++ -c -g -O2 conftest.cpp >&5
conftest.cpp: In function 'int main(int, char**)':
conftest.cpp:191:25: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse]
191 | cxx11test::delegate d2();
| ^~
conftest.cpp:191:25: note: remove parentheses to default-initialize a variable
191 | cxx11test::delegate d2();
| ^~
| --
conftest.cpp:191:25: note: or replace parentheses with braces to value-initialize a variable
configure:14968: $? = 0
configure:14987: result: none needed
configure:15058: checking dependency style of g++
configure:15171: result: gcc3
configure:15204: checking how to run the C++ preprocessor
configure:15226: g++ -E conftest.cpp
configure:15226: $? = 0
configure:15242: g++ -E conftest.cpp
conftest.cpp:25:10: fatal error: ac_nonexistent.h: No such file or directory
25 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:15242: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:15271: result: g++ -E
configure:15285: g++ -E conftest.cpp
configure:15285: $? = 0
configure:15301: g++ -E conftest.cpp
conftest.cpp:25:10: fatal error: ac_nonexistent.h: No such file or directory
25 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:15301: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:15469: checking for ld used by g++
configure:15538: result: /usr/bin/ld -m elf_x86_64
configure:15545: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:15562: result: yes
configure:15617: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:16697: result: yes
configure:16733: g++ -c -g -O2 conftest.cpp >&5
configure:16736: $? = 0
configure:17217: checking for g++ option to produce PIC
configure:17226: result: -fPIC -DPIC
configure:17234: checking if g++ PIC flag -fPIC -DPIC works
configure:17253: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:17257: $? = 0
configure:17271: result: yes
configure:17294: checking if g++ static flag -static works
configure:17324: result: no
configure:17336: checking if g++ supports -c -o file.o
configure:17358: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:17362: $? = 0
configure:17385: result: yes
configure:17390: checking if g++ supports -c -o file.o
configure:17439: result: yes
configure:17469: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:17509: result: yes
configure:17652: checking dynamic linker characteristics
configure:18401: result: GNU/Linux ld.so
configure:18466: checking how to hardcode library paths into programs
configure:18491: result: immediate
configure:18590: checking for g77
configure:18626: result: no
configure:18590: checking for xlf
configure:18626: result: no
configure:18590: checking for f77
configure:18626: result: no
configure:18590: checking for frt
configure:18626: result: no
configure:18590: checking for pgf77
configure:18626: result: no
configure:18590: checking for cf77
configure:18626: result: no
configure:18590: checking for fort77
configure:18626: result: no
configure:18590: checking for fl32
configure:18626: result: no
configure:18590: checking for af77
configure:18626: result: no
configure:18590: checking for xlf90
configure:18626: result: no
configure:18590: checking for f90
configure:18626: result: no
configure:18590: checking for pgf90
configure:18626: result: no
configure:18590: checking for pghpf
configure:18626: result: no
configure:18590: checking for epcf90
configure:18626: result: no
configure:18590: checking for gfortran
configure:18611: found /path/to/gcc/gcc-13.0.1/bin/gfortran
configure:18623: result: gfortran
configure:18649: checking for Fortran 77 compiler version
configure:18658: gfortran --version >&5
GNU Fortran (GCC) 13.0.1 20230412 (experimental)
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:18669: $? = 0
configure:18658: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.0.1 20230412 (experimental) (GCC)
configure:18669: $? = 0
configure:18658: gfortran -V >&5
gfortran: error: unrecognized command-line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:18669: $? = 1
configure:18658: gfortran -qversion >&5
gfortran: error: unrecognized command-line option '-qversion'; did you mean '--version'?
gfortran: fatal error: no input files
compilation terminated.
configure:18669: $? = 1
configure:18678: checking whether the compiler supports GNU Fortran 77
configure:18692: gfortran -c conftest.F >&5
configure:18692: $? = 0
configure:18704: result: yes
configure:18712: checking whether gfortran accepts -g
configure:18724: gfortran -c -g conftest.f >&5
configure:18724: $? = 0
configure:18735: result: yes
configure:18864: checking if libtool supports shared libraries
configure:18866: result: yes
configure:18869: checking whether to build shared libraries
configure:18893: result: yes
configure:18896: checking whether to build static libraries
configure:18900: result: yes
configure:19252: checking for gfortran option to produce PIC
configure:19261: result: -fPIC
configure:19269: checking if gfortran PIC flag -fPIC works
configure:19288: gfortran -c -g -O2 -fPIC conftest.f >&5
configure:19292: $? = 0
configure:19306: result: yes
configure:19329: checking if gfortran static flag -static works
configure:19359: result: no
configure:19371: checking if gfortran supports -c -o file.o
configure:19393: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:19397: $? = 0
configure:19420: result: yes
configure:19425: checking if gfortran supports -c -o file.o
configure:19474: result: yes
configure:19504: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:20725: result: yes
configure:20868: checking dynamic linker characteristics
configure:21611: result: GNU/Linux ld.so
configure:21676: checking how to hardcode library paths into programs
configure:21701: result: immediate
configure:21734: checking for C/C++ restrict keyword
configure:21764: gcc -c -g -O2 conftest.c >&5
configure:21764: $? = 0
configure:21774: result: __restrict__
configure:21793: checking whether g++ supports C++20 features by default
configure:22618: g++ -c -g -O2 conftest.cpp >&5
conftest.cpp:823:2: error: #error "This is not a C++20 compiler"
823 | #error "This is not a C++20 compiler"
| ^~~~~
configure:22618: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| /* end confdefs.h. */
|
|
| // If the compiler admits that it is not ready for C++11, why torture it?
| // Hopefully, this will speed up the test.
|
| #ifndef __cplusplus
|
| #error "This is not a C++ compiler"
|
| // MSVC always sets __cplusplus to 199711L in older versions; newer versions
| // only set it correctly if /Zc:__cplusplus is specified as well as a
| // /std:c++NN switch:
| // https://devblogs.microsoft.com/cppblog/msvc-now-correctly-reports-__cplusplus/
| #elif __cplusplus < 201103L && !defined _MSC_VER
|
| #error "This is not a C++11 compiler"
|
| #else
|
| namespace cxx11
| {
|
| namespace test_static_assert
| {
|
| template <typename T>
| struct check
| {
| static_assert(sizeof(int) <= sizeof(T), "not big enough");
| };
|
| }
|
| namespace test_final_override
| {
|
| struct Base
| {
| virtual ~Base() {}
| virtual void f() {}
| };
|
| struct Derived : public Base
| {
| virtual ~Derived() override {}
| virtual void f() override {}
| };
|
| }
|
| namespace test_double_right_angle_brackets
| {
|
| template < typename T >
| struct check {};
|
| typedef check<void> single_type;
| typedef check<check<void>> double_type;
| typedef check<check<check<void>>> triple_type;
| typedef check<check<check<check<void>>>> quadruple_type;
|
| }
|
| namespace test_decltype
| {
|
| int
| f()
| {
| int a = 1;
| decltype(a) b = 2;
| return a + b;
| }
|
| }
|
| namespace test_type_deduction
| {
|
| template < typename T1, typename T2 >
| struct is_same
| {
| static const bool value = false;
| };
|
| template < typename T >
| struct is_same<T, T>
| {
| static const bool value = true;
| };
|
| template < typename T1, typename T2 >
| auto
| add(T1 a1, T2 a2) -> decltype(a1 + a2)
| {
| return a1 + a2;
| }
|
| int
| test(const int c, volatile int v)
| {
| static_assert(is_same<int, decltype(0)>::value == true, "");
| static_assert(is_same<int, decltype(c)>::value == false, "");
| static_assert(is_same<int, decltype(v)>::value == false, "");
| auto ac = c;
| auto av = v;
| auto sumi = ac + av + 'x';
| auto sumf = ac + av + 1.0;
| static_assert(is_same<int, decltype(ac)>::value == true, "");
| static_assert(is_same<int, decltype(av)>::value == true, "");
| static_assert(is_same<int, decltype(sumi)>::value == true, "");
| static_assert(is_same<int, decltype(sumf)>::value == false, "");
| static_assert(is_same<int, decltype(add(c, v))>::value == true, "");
| return (sumf > 0.0) ? sumi : add(c, v);
| }
|
| }
|
| namespace test_noexcept
| {
|
| int f() { return 0; }
| int g() noexcept { return 0; }
|
| static_assert(noexcept(f()) == false, "");
| static_assert(noexcept(g()) == true, "");
|
| }
|
| namespace test_constexpr
| {
|
| template < typename CharT >
| unsigned long constexpr
| strlen_c_r(const CharT *const s, const unsigned long acc) noexcept
| {
| return *s ? strlen_c_r(s + 1, acc + 1) : acc;
| }
|
| template < typename CharT >
| unsigned long constexpr
| strlen_c(const CharT *const s) noexcept
| {
| return strlen_c_r(s, 0UL);
| }
|
| static_assert(strlen_c("") == 0UL, "");
| static_assert(strlen_c("1") == 1UL, "");
| static_assert(strlen_c("example") == 7UL, "");
| static_assert(strlen_c("another\0example") == 7UL, "");
|
| }
|
| namespace test_rvalue_references
| {
|
| template < int N >
| struct answer
| {
| static constexpr int value = N;
| };
|
| answer<1> f(int&) { return answer<1>(); }
| answer<2> f(const int&) { return answer<2>(); }
| answer<3> f(int&&) { return answer<3>(); }
|
| void
| test()
| {
| int i = 0;
| const int c = 0;
| static_assert(decltype(f(i))::value == 1, "");
| static_assert(decltype(f(c))::value == 2, "");
| static_assert(decltype(f(0))::value == 3, "");
| }
|
| }
|
| namespace test_uniform_initialization
| {
|
| struct test
| {
| static const int zero {};
| static const int one {1};
| };
|
| static_assert(test::zero == 0, "");
| static_assert(test::one == 1, "");
|
| }
|
| namespace test_lambdas
| {
|
| void
| test1()
| {
| auto lambda1 = [](){};
| auto lambda2 = lambda1;
| lambda1();
| lambda2();
| }
|
| int
| test2()
| {
| auto a = [](int i, int j){ return i + j; }(1, 2);
| auto b = []() -> int { return '0'; }();
| auto c = [=](){ return a + b; }();
| auto d = [&](){ return c; }();
| auto e = [a, &b](int x) mutable {
| const auto identity = [](int y){ return y; };
| for (auto i = 0; i < a; ++i)
| a += b--;
| return x + identity(a + b);
| }(0);
| return a + b + c + d + e;
| }
|
| int
| test3()
| {
| const auto nullary = [](){ return 0; };
| const auto unary = [](int x){ return x; };
| using nullary_t = decltype(nullary);
| using unary_t = decltype(unary);
| const auto higher1st = [](nullary_t f){ return f(); };
| const auto higher2nd = [unary](nullary_t f1){
| return [unary, f1](unary_t f2){ return f2(unary(f1())); };
| };
| return higher1st(nullary) + higher2nd(nullary)(unary);
| }
|
| }
|
| namespace test_variadic_templates
| {
|
| template <int...>
| struct sum;
|
| template <int N0, int... N1toN>
| struct sum<N0, N1toN...>
| {
| static constexpr auto value = N0 + sum<N1toN...>::value;
| };
|
| template <>
| struct sum<>
| {
| static constexpr auto value = 0;
| };
|
| static_assert(sum<>::value == 0, "");
| static_assert(sum<1>::value == 1, "");
| static_assert(sum<23>::value == 23, "");
| static_assert(sum<1, 2>::value == 3, "");
| static_assert(sum<5, 5, 11>::value == 21, "");
| static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");
|
| }
|
| // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
| // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function
| // because of this.
| namespace test_template_alias_sfinae
| {
|
| struct foo {};
|
| template<typename T>
| using member = typename T::member_type;
|
| template<typename T>
| void func(...) {}
|
| template<typename T>
| void func(member<T>*) {}
|
| void test();
|
| void test() { func<foo>(0); }
|
| }
|
| } // namespace cxx11
|
| #endif // __cplusplus >= 201103L
|
|
|
|
| // If the compiler admits that it is not ready for C++14, why torture it?
| // Hopefully, this will speed up the test.
|
| #ifndef __cplusplus
|
| #error "This is not a C++ compiler"
|
| #elif __cplusplus < 201402L && !defined _MSC_VER
|
| #error "This is not a C++14 compiler"
|
| #else
|
| namespace cxx14
| {
|
| namespace test_polymorphic_lambdas
| {
|
| int
| test()
| {
| const auto lambda = [](auto&&... args){
| const auto istiny = [](auto x){
| return (sizeof(x) == 1UL) ? 1 : 0;
| };
| const int aretiny[] = { istiny(args)... };
| return aretiny[0];
| };
| return lambda(1, 1L, 1.0f, '1');
| }
|
| }
|
| namespace test_binary_literals
| {
|
| constexpr auto ivii = 0b0000000000101010;
| static_assert(ivii == 42, "wrong value");
|
| }
|
| namespace test_generalized_constexpr
| {
|
| template < typename CharT >
| constexpr unsigned long
| strlen_c(const CharT *const s) noexcept
| {
| auto length = 0UL;
| for (auto p = s; *p; ++p)
| ++length;
| return length;
| }
|
| static_assert(strlen_c("") == 0UL, "");
| static_assert(strlen_c("x") == 1UL, "");
| static_assert(strlen_c("test") == 4UL, "");
| static_assert(strlen_c("another\0test") == 7UL, "");
|
| }
|
| namespace test_lambda_init_capture
| {
|
| int
| test()
| {
| auto x = 0;
| const auto lambda1 = [a = x](int b){ return a + b; };
| const auto lambda2 = [a = lambda1(x)](){ return a; };
| return lambda2();
| }
|
| }
|
| namespace test_digit_separators
| {
|
| constexpr auto ten_million = 100'000'000;
| static_assert(ten_million == 100000000, "");
|
| }
|
| namespace test_return_type_deduction
| {
|
| auto f(int& x) { return x; }
| decltype(auto) g(int& x) { return x; }
|
| template < typename T1, typename T2 >
| struct is_same
| {
| static constexpr auto value = false;
| };
|
| template < typename T >
| struct is_same<T, T>
| {
| static constexpr auto value = true;
| };
|
| int
| test()
| {
| auto x = 0;
| static_assert(is_same<int, decltype(f(x))>::value, "");
| static_assert(is_same<int&, decltype(g(x))>::value, "");
| return x;
| }
|
| }
|
| } // namespace cxx14
|
| #endif // __cplusplus >= 201402L
|
|
|
|
| // If the compiler admits that it is not ready for C++17, why torture it?
| // Hopefully, this will speed up the test.
|
| #ifndef __cplusplus
|
| #error "This is not a C++ compiler"
|
| #elif __cplusplus < 201703L && !defined _MSC_VER
|
| #error "This is not a C++17 compiler"
|
| #else
|
| #include <initializer_list>
| #include <utility>
| #include <type_traits>
|
| namespace cxx17
| {
|
| namespace test_constexpr_lambdas
| {
|
| constexpr int foo = [](){return 42;}();
|
| }
|
| namespace test::nested_namespace::definitions
| {
|
| }
|
| namespace test_fold_expression
| {
|
| template<typename... Args>
| int multiply(Args... args)
| {
| return (args * ... * 1);
| }
|
| template<typename... Args>
| bool all(Args... args)
| {
| return (args && ...);
| }
|
| }
|
| namespace test_extended_static_assert
| {
|
| static_assert (true);
|
| }
|
| namespace test_auto_brace_init_list
| {
|
| auto foo = {5};
| auto bar {5};
|
| static_assert(std::is_same<std::initializer_list<int>, decltype(foo)>::value);
| static_assert(std::is_same<int, decltype(bar)>::value);
| }
|
| namespace test_typename_in_template_template_parameter
| {
|
| template<template<typename> typename X> struct D;
|
| }
|
| namespace test_fallthrough_nodiscard_maybe_unused_attributes
| {
|
| int f1()
| {
| return 42;
| }
|
| [[nodiscard]] int f2()
| {
| [[maybe_unused]] auto unused = f1();
|
| switch (f1())
| {
| case 17:
| f1();
| [[fallthrough]];
| case 42:
| f1();
| }
| return f1();
| }
|
| }
|
| namespace test_extended_aggregate_initialization
| {
|
| struct base1
| {
| int b1, b2 = 42;
| };
|
| struct base2
| {
| base2() {
| b3 = 42;
| }
| int b3;
| };
|
| struct derived : base1, base2
| {
| int d;
| };
|
| derived d1 {{1, 2}, {}, 4}; // full initialization
| derived d2 {{}, {}, 4}; // value-initialized bases
|
| }
|
| namespace test_general_range_based_for_loop
| {
|
| struct iter
| {
| int i;
|
| int& operator* ()
| {
| return i;
| }
|
| const int& operator* () const
| {
| return i;
| }
|
| iter& operator++()
| {
| ++i;
| return *this;
| }
| };
|
| struct sentinel
| {
| int i;
| };
|
| bool operator== (const iter& i, const sentinel& s)
| {
| return i.i == s.i;
| }
|
| bool operator!= (const iter& i, const sentinel& s)
| {
| return !(i == s);
| }
|
| struct range
| {
| iter begin() const
| {
| return {0};
| }
|
| sentinel end() const
| {
| return {5};
| }
| };
|
| void f()
| {
| range r {};
|
| for (auto i : r)
| {
| [[maybe_unused]] auto v = i;
| }
| }
|
| }
|
| namespace test_lambda_capture_asterisk_this_by_value
| {
|
| struct t
| {
| int i;
| int foo()
| {
| return [*this]()
| {
| return i;
| }();
| }
| };
|
| }
|
| namespace test_enum_class_construction
| {
|
| enum class byte : unsigned char
| {};
|
| byte foo {42};
|
| }
|
| namespace test_constexpr_if
| {
|
| template <bool cond>
| int f ()
| {
| if constexpr(cond)
| {
| return 13;
| }
| else
| {
| return 42;
| }
| }
|
| }
|
| namespace test_selection_statement_with_initializer
| {
|
| int f()
| {
| return 13;
| }
|
| int f2()
| {
| if (auto i = f(); i > 0)
| {
| return 3;
| }
|
| switch (auto i = f(); i + 4)
| {
| case 17:
| return 2;
|
| default:
| return 1;
| }
| }
|
| }
|
| namespace test_template_argument_deduction_for_class_templates
| {
|
| template <typename T1, typename T2>
| struct pair
| {
| pair (T1 p1, T2 p2)
| : m1 {p1},
| m2 {p2}
| {}
|
| T1 m1;
| T2 m2;
| };
|
| void f()
| {
| [[maybe_unused]] auto p = pair{13, 42u};
| }
|
| }
|
| namespace test_non_type_auto_template_parameters
| {
|
| template <auto n>
| struct B
| {};
|
| B<5> b1;
| B<'a'> b2;
|
| }
|
| namespace test_structured_bindings
| {
|
| int arr[2] = { 1, 2 };
| std::pair<int, int> pr = { 1, 2 };
|
| auto f1() -> int(&)[2]
| {
| return arr;
| }
|
| auto f2() -> std::pair<int, int>&
| {
| return pr;
| }
|
| struct S
| {
| int x1 : 2;
| volatile double y1;
| };
|
| S f3()
| {
| return {};
| }
|
| auto [ x1, y1 ] = f1();
| auto& [ xr1, yr1 ] = f1();
| auto [ x2, y2 ] = f2();
| auto& [ xr2, yr2 ] = f2();
| const auto [ x3, y3 ] = f3();
|
| }
|
| namespace test_exception_spec_type_system
| {
|
| struct Good {};
| struct Bad {};
|
| void g1() noexcept;
| void g2();
|
| template<typename T>
| Bad
| f(T*, T*);
|
| template<typename T1, typename T2>
| Good
| f(T1*, T2*);
|
| static_assert (std::is_same_v<Good, decltype(f(g1, g2))>);
|
| }
|
| namespace test_inline_variables
| {
|
| template<class T> void f(T)
| {}
|
| template<class T> inline T g(T)
| {
| return T{};
| }
|
| template<> inline void f<>(int)
| {}
|
| template<> int g<>(int)
| {
| return 5;
| }
|
| }
|
| } // namespace cxx17
|
| #endif // __cplusplus < 201703L && !defined _MSC_VER
|
|
|
|
| #ifndef __cplusplus
|
| #error "This is not a C++ compiler"
|
| #elif __cplusplus < 202002L && !defined _MSC_VER
|
| #error "This is not a C++20 compiler"
|
| #else
|
| #include <version>
|
| namespace cxx20
| {
|
| // As C++20 supports feature test macros in the standard, there is no
| // immediate need to actually test for feature availability on the
| // Autoconf side.
|
| } // namespace cxx20
|
| #endif // __cplusplus < 202002L && !defined _MSC_VER
|
|
|
configure:22628: result: no
configure:22638: checking whether g++ supports C++20 features with -std=gnu++20
configure:23465: g++ -std=gnu++20 -c -g -O2 conftest.cpp >&5
conftest.cpp:125:36: warning: 'volatile'-qualified parameter is deprecated [-Wvolatile]
125 | test(const int c, volatile int v)
| ~~~~~~~~~~~~~^
configure:23465: $? = 0
configure:23477: result: yes
configure:24388: checking for gcc option to support OpenMP
configure:24410: gcc -c -g -O2 conftest.c >&5
conftest.c:29:2: error: #error "OpenMP not supported"
29 | #error "OpenMP not supported"
| ^~~~~
configure:24410: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| /* end confdefs.h. */
|
| #ifndef _OPENMP
| #error "OpenMP not supported"
| #endif
| #include <omp.h>
| int main (void) { return omp_get_num_threads (); }
|
configure:24410: gcc -c -g -O2 -fopenmp conftest.c >&5
configure:24410: $? = 0
configure:24422: gcc -o conftest -g -O2 -fopenmp conftest.c >&5
configure:24422: $? = 0
configure:24447: result: -fopenmp
configure:24505: checking for ar
configure:24538: result: ar
configure:24609: checking for cpp
configure:24630: found /path/to/gcc/gcc-13.0.1/bin/cpp
configure:24642: result: cpp
configure:24713: checking for ld
configure:24746: result: /usr/bin/ld -m elf_x86_64
configure:24817: checking for nm
configure:24850: result: /usr/bin/nm -B
configure:24921: checking for ar
configure:24954: result: ar
configure:25025: checking for as
configure:25046: found /usr/bin/as
configure:25058: result: as
configure:25129: checking for dlltool
configure:25162: result: false
configure:25233: checking for objdump
configure:25266: result: objdump
configure:25337: checking for strip
configure:25370: result: strip
configure:25441: checking for ranlib
configure:25474: result: ranlib
configure:25510: checking for gcc option to enable large file support
configure:25545: gcc -c -g -O2 conftest.c >&5
configure:25545: $? = 0
configure:25551: gcc -DFTYPE=ino_t -c -g -O2 conftest.c >&5
configure:25551: $? = 0
configure:25576: result: none needed
configure:25685: checking for getpagesize
configure:25685: gcc -o conftest -g -O2 conftest.c >&5
configure:25685: $? = 0
configure:25685: result: yes
configure:25696: checking for working mmap
configure:25846: gcc -o conftest -g -O2 conftest.c >&5
configure:25846: $? = 0
configure:25846: ./conftest
configure:25846: $? = 0
configure:25860: result: yes
configure:25871: checking for struct stat.st_blksize
configure:25871: gcc -c -g -O2 conftest.c >&5
configure:25871: $? = 0
configure:25871: result: yes
configure:25882: checking for mallinfo
configure:25882: gcc -o conftest -g -O2 conftest.c >&5
configure:25882: $? = 0
configure:25882: result: yes
configure:25889: checking for backtrace
configure:25889: gcc -o conftest -g -O2 conftest.c >&5
configure:25889: $? = 0
configure:25889: result: yes
configure:25898: checking for getrlimit
configure:25898: gcc -o conftest -g -O2 conftest.c >&5
configure:25898: $? = 0
configure:25898: result: yes
configure:25966: checking for fenv_t.__control
configure:25966: gcc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:43:13: error: 'fenv_t' has no member named '__control'; did you mean '__control_word'?
43 | if (ac_aggr.__control)
| ^~~~~~~~~
| __control_word
configure:25966: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main (void)
| {
| static fenv_t ac_aggr;
| if (ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:25966: gcc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:43:20: error: 'fenv_t' has no member named '__control'; did you mean '__control_word'?
43 | if (sizeof ac_aggr.__control)
| ^~~~~~~~~
| __control_word
configure:25966: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main (void)
| {
| static fenv_t ac_aggr;
| if (sizeof ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:25966: result: no
configure:25975: checking for fenv_t.__mxcsr
configure:25975: gcc -c -g -O2 conftest.c >&5
configure:25975: $? = 0
configure:25975: result: yes
configure:26000: checking C preprocessor flags for Fortran calling convention cfortran.h
configure:26105: result: -DgFortran (probed)
configure:26144: checking if C externals constructed with cfortran.h work
configure:26205: gcc -c -g -O2 -I./src -DgFortran conftest.c >&5
configure:26205: $? = 0
configure:26207: Renaming C object file.
configure:26210: $? = 0
configure:26228: gfortran -c -g -O2 conftest.f >&5
configure:26228: $? = 0
configure:26230: Renaming Fortran object file.
configure:26233: $? = 0
configure:26290: gfortran -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o >&5
configure:26290: $? = 0
configure:26290: ./conftest
configure:26290: $? = 0
configure:26330: result: yes
configure:26398: checking how to run the C preprocessor
configure:26469: result: cpp
configure:26483: cpp -DgFortran conftest.c
configure:26483: $? = 0
configure:26499: cpp -DgFortran conftest.c
conftest.c:39:10: fatal error: ac_nonexistent.h: No such file or directory
39 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:26499: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:26532: checking for egrep -e
configure:26662: result: /usr/bin/grep -E
configure:26669: checking for gcc options needed to detect all undeclared functions
configure:26691: gcc -c -g -O2 -fopenmp -DgFortran conftest.c >&5
conftest.c: In function 'main':
conftest.c:43:8: error: 'strchr' undeclared (first use in this function)
43 | (void) strchr;
| ^~~~~~
conftest.c:1:1: note: 'strchr' is defined in header '<string.h>'; did you forget to '#include <string.h>'?
1 | /* confdefs.h */
conftest.c:43:8: note: each undeclared identifier is reported only once for each function it appears in
43 | (void) strchr;
| ^~~~~~
configure:26691: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| /* end confdefs.h. */
|
| int
| main (void)
| {
| (void) strchr;
| ;
| return 0;
| }
configure:26718: gcc -c -g -O2 -fopenmp -DgFortran conftest.c >&5
configure:26718: $? = 0
configure:26738: result: none needed
configure:26939: checking whether gcc is Clang
configure:26967: result: no
configure:27033: checking whether pthreads work with "-pthread" and "-lpthread"
configure:27145: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5
configure:27145: $? = 0
configure:27155: result: yes
configure:27279: checking for joinable pthread attribute
configure:27298: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5
configure:27298: $? = 0
configure:27308: result: PTHREAD_CREATE_JOINABLE
configure:27321: checking whether more special flags are required for pthreads
configure:27336: result: no
configure:27345: checking for PTHREAD_PRIO_INHERIT
configure:27363: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5
configure:27363: $? = 0
configure:27375: result: yes
configure:27753: checking for szlib library
configure:27755: result: suppressed
configure:27943: checking for hdf5.h
configure:27943: gcc -c -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:27943: $? = 0
configure:27943: result: yes
configure:27950: checking for library containing H5Fopen
configure:27986: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/ccaJQai5.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `H5Fopen'
collect2: error: ld returned 1 exit status
configure:27986: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen (void);
| int
| main (void)
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:27986: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5 -lpthread >&5
configure:27986: $? = 0
configure:28008: result: -lhdf5
configure:28022: checking for library containing H5DSis_scale
configure:28058: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5 -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/cc9CRHch.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `H5DSis_scale'
collect2: error: ld returned 1 exit status
configure:28058: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale (void);
| int
| main (void)
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:28058: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5
configure:28058: $? = 0
configure:28080: result: -lhdf5_hl
configure:28342: checking for netcdf.h
configure:28342: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:28342: $? = 0
configure:28342: result: yes
configure:28348: checking for netcdf_meta.h
configure:28348: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:28348: $? = 0
configure:28348: result: yes
configure:28355: checking for library containing nc_open
configure:28391: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/cchuzM6p.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `nc_open'
collect2: error: ld returned 1 exit status
configure:28391: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_NETCDF_META_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open (void);
| int
| main (void)
| {
| return nc_open ();
| ;
| return 0;
| }
configure:28391: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
configure:28391: $? = 0
configure:28413: result: -lnetcdf
configure:28430: checking nc-config script
configure:28434: checking for nc-config
configure:28455: found /path/to/netcdf-c-4.7.4/bin/nc-config
configure:28467: result: /path/to/netcdf-c-4.7.4/bin/nc-config
configure:28477: checking netcdf's OpenDAP support
configure:28484: result: yes
configure:28491: checking netcdf's nc2 support
configure:28499: result: yes
configure:28506: checking netcdf's nc4 support
configure:28514: result: yes
configure:28521: checking netcdf's nc4/hdf5 support
configure:28529: result: yes
configure:28560: checking for library containing H5TS_mutex_lock
configure:28596: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/cclPXqLx.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `H5TS_mutex_lock'
collect2: error: ld returned 1 exit status
configure:28596: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_NETCDF_META_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5TS_mutex_lock (void);
| int
| main (void)
| {
| return H5TS_mutex_lock ();
| ;
| return 0;
| }
configure:28596: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/ccotbxOk.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `H5TS_mutex_lock'
collect2: error: ld returned 1 exit status
configure:28596: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_NETCDF_META_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5TS_mutex_lock (void);
| int
| main (void)
| {
| return H5TS_mutex_lock ();
| ;
| return 0;
| }
configure:28618: result: no
configure:28633: checking for library containing H5dont_atexit
configure:28669: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
configure:28669: $? = 0
configure:28691: result: none required
configure:28911: checking for the UDUNITS2 library
configure:28913: result: suppressed
configure:29075: checking for uuid/uuid.h extra include path
configure:29099: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:29099: $? = 0
configure:29134: result: (none required)
configure:29164: checking for library containing uuid_generate
configure:29204: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
/usr/bin/ld: Dwarf Error: Can't find .debug_ranges section.
/local/cc8YdcVC.o: In function `main':
conftest.c:(.text.startup+0x5): undefined reference to `uuid_generate'
collect2: error: ld returned 1 exit status
configure:29204: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "2.4.2"
| #define PACKAGE_STRING "cdo 2.4.2"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "2.4.2"
| #define PACKAGE "cdo"
| #define VERSION "2.4.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define STDC_HEADERS 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict__
| #define HAVE_CXX20 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)"
| #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)"
| #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_NETCDF_META_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| #define HAVE_H5DONT_ATEXIT 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char uuid_generate (void);
| int
| main (void)
| {
| return uuid_generate ();
| ;
| return 0;
| }
configure:29204: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -luuid -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
configure:29204: $? = 0
configure:29297: result: -luuid
configure:29324: checking for uuid/uuid.h
configure:29324: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:29324: $? = 0
configure:29324: result: yes
configure:29329: checking whether uuid_generate is declared
configure:29329: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5
configure:29329: $? = 0
configure:29329: result: yes
configure:30235: checking for the CMOR library
configure:30237: result: suppressed
configure:30435: checking for the ECCODES library
configure:30437: result: suppressed
configure:30447: checking for GRIB support
configure:30467: result: yes
configure:30473: checking for CGRIBEX support
configure:30493: result: yes
configure:30499: checking for SERVICE support
configure:30519: result: yes
configure:30525: checking for EXTRA support
configure:30545: result: yes
configure:30551: checking for IEG support
configure:30571: result: yes
configure:30577: checking for FFTW3 support
configure:30867: checking for the PROJ library
configure:30869: result: suppressed
configure:31067: checking for the CURL library
configure:31069: result: suppressed
configure:31267: checking for MAGICS library
configure:31269: result: suppressed
configure:31480: checking for XML2 library
configure:31482: result: suppressed
configure:31502: checking for build a separate CDI library and link CDO to it
configure:31523: result: no
configure:31671: checking for building an additional static CDO binary
configure:31688: result: no
configure:31700: checking for HIRLAM extensions
configure:31720: result: no
configure:31783: checking for pthread_join using gcc -pthread -lpthread
configure:31806: gcc -o conftest -g -O2 -fopenmp -pthread -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
configure:31806: $? = 0
configure:31812: result: yes
configure:31916: checking whether gcc is Clang
configure:31944: result: no
configure:32256: checking for joinable pthread attribute
configure:32285: result: PTHREAD_CREATE_JOINABLE
configure:32298: checking whether more special flags are required for pthreads
configure:32313: result: no
configure:32322: checking for PTHREAD_PRIO_INHERIT
configure:32352: result: yes
configure:32741: checking for fdb5 library
configure:32743: result: suppressed
configure:32955: checking for szlib library
configure:32957: result: suppressed
configure:33124: checking for netcdf.h
configure:33124: result: yes
configure:33136: checking for library containing nc_open
configure:33194: result: -lnetcdf
configure:33213: checking for nc-config
configure:33246: result: /path/to/netcdf-c-4.7.4/bin/nc-config
configure:33279: checking netcdf's OpenDAP support
configure:33291: result: yes
configure:33300: checking netcdf's Zarr support
configure:33312: result: no
configure:33321: checking netcdf's nc2 support
configure:33333: result: yes
configure:33343: checking netcdf's nc4 support
configure:33355: result: yes
configure:33365: checking netcdf's nc4/hdf5 support
configure:33377: result: yes
configure:33387: checking netcdf's nc4/szlib support
configure:33399: result: no
configure:33485: checking for library containing H5get_libversion
configure:33521: gcc -o conftest -g -O2 -fopenmp -pthread -pthread -I/path/to/netcdf-c-4.7.4/include -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t -L/path/to/netcdf-c-4.7.4/lib -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
configure:33521: $? = 0
configure:33543: result: none required
configure:33767: checking for the ECCODES library
configure:33769: result: suppressed
configure:33786: checking for GRIB support
configure:33806: result: yes
configure:33812: checking for ACROSS support
configure:33832: result: yes
configure:33838: checking for CGRIBEX support
configure:33858: result: yes
configure:33864: checking for SERVICE support
configure:33884: result: yes
configure:33890: checking for EXTRA support
configure:33910: result: yes
configure:33916: checking for IEG support
configure:33936: result: yes
configure:33972: checking for building an additional static CDI binary
configure:33989: result: no
configure:34001: checking for HIRLAM extensions
configure:34021: result: no
configure:34082: checking for gawk
configure:34115: result: gawk
configure:34259: checking that generated files are newer than configure
configure:34265: result: done
configure:34322: === configuring in libcdi (/path/to/me/cdo-2.4.2/libcdi)
configure:34392: running /bin/sh ./configure '--prefix=/path/to/cdo/2.4.2' --disable-option-checking '--with-netcdf=/path/to/netcdf-c-4.7.4' '--with-hdf5=/cm/shared/apps/hdf5/1.10.1' 'CPPFLAGS=-DCDI_SIZE_TYPE=size_t' '--srcdir=.' --cache-file=/dev/null
configure:34395: error: ./configure failed for libcdi

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict__
ac_cv_c_undeclared_builtin_options='none needed'
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DCE_UUID_C_INCLUDE_set=
ac_cv_env_DCE_UUID_C_INCLUDE_value=
ac_cv_env_DCE_UUID_C_LIB_set=
ac_cv_env_DCE_UUID_C_LIB_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_OSSP_UUID_C_INCLUDE_set=
ac_cv_env_OSSP_UUID_C_INCLUDE_value=
ac_cv_env_OSSP_UUID_C_LIB_set=
ac_cv_env_OSSP_UUID_C_LIB_value=
ac_cv_env_PYTHON_set=
ac_cv_env_PYTHON_value=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_set=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_func_backtrace=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_uuid_generate=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_netcdf_meta_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdio_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_uuid_uuid_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_member_fenv_t___control=no
ac_cv_member_fenv_t___mxcsr=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_EGREP_TRADITIONAL='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_PYTHON=/usr/bin/python
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_ac_pt_BASH=/bin/sh
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/usr/bin/dd
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP=cpp
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_NC_CONFIG=/path/to/netcdf-c-4.7.4/bin/nc-config
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CPP=cpp
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_F77=gfortran
ac_cv_prog_ac_ct_FILECMD=file
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp=-fopenmp
ac_cv_prog_cc_c11=
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_cxx_cxx11=
ac_cv_prog_cxx_g=yes
ac_cv_prog_cxx_stdcxx=
ac_cv_prog_f77_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_H5TS_mutex_lock=no
ac_cv_search_H5dont_atexit='none required'
ac_cv_search_H5get_libversion='none required'
ac_cv_search_nc_open=-lnetcdf
ac_cv_sys_largefile_opts='none needed'
acx_cv_c_include_uuid_uuid_h=
acx_cv_cf_flag='-DgFortran (probed)'
acx_cv_cfortran_works=yes
acx_cv_f77_cf_flag=-DgFortran
acx_cv_have_libnc_dap=yes
acx_cv_have_nc4hdf5=yes
acx_cv_have_nc4szlib=no
acx_cv_have_nczarr=no
acx_cv_have_netcdf2=yes
acx_cv_have_netcdf4=yes
acx_cv_option_search_uuid_generate_c=' -luuid'
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_pathless_PYTHON=python
am_cv_prog_cc_c_o=yes
am_cv_python_platform=linux
am_cv_python_pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages'
am_cv_python_pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages'
am_cv_python_version=3.6
ax_cv_PTHREAD_CLANG=no
ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE
ax_cv_PTHREAD_PRIO_INHERIT=yes
ax_cv_PTHREAD_SPECIAL_FLAGS=no
ax_cv_cxx_compile_cxx20=no
ax_cv_cxx_compile_cxx20__std_gnupp20=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_compiler_static_works_F77=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='/usr/bin/sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | /usr/bin/sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='/usr/bin/sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=3458764513820540925
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' aclocal-1.16'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' autoconf'
AUTOHEADER='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' autoheader'
AUTOMAKE='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' automake-1.16'
AWK='gawk'
BASH='/bin/sh'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -fopenmp -pthread -pthread'
CLDFLAGS=''
CLIBS=''
CMOR_LIBS=''
CPP='cpp'
CPPFLAGS='-I/path/to/netcdf-c-4.7.4/include -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t'
CSCOPE='cscope'
CTAGS='ctags'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++ -std=gnu++20'
CXXCPP='g++ -E -std=gnu++20'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2 -fopenmp -pthread'
CYGPATH_W='echo'
DCE_UUIDROOT=''
DCE_UUID_C_INCLUDE=''
DCE_UUID_C_LIB=''
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECCODES_INCLUDE=''
ECCODES_LIBS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
ENABLE_ACROSS='yes'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_APP_FALSE='#'
ENABLE_CDI_APP_TRUE=''
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='yes'
ENABLE_EXTRA='yes'
ENABLE_FORTRAN='true'
ENABLE_GRIB='yes'
ENABLE_GRIBAPI='no'
ENABLE_HIRLAM_EXTENSIONS_FALSE=''
ENABLE_HIRLAM_EXTENSIONS_TRUE='#'
ENABLE_IEG='yes'
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE='#'
ENABLE_NC2='yes'
ENABLE_NC4='yes'
ENABLE_NC4HDF5='yes'
ENABLE_NC4SZLIB='no'
ENABLE_NETCDF='yes'
ENABLE_SERVICE='yes'
ENABLE_THREADS='yes'
ETAGS='etags'
EXEEXT=''
F77='gfortran'
FDB5_INCLUDE=''
FDB5_LIBS=''
FFLAGS='-g -O2'
FGREP='/usr/bin/grep -F'
FILECMD='file'
FORTRAN_WORKS='yes'
GREP='/usr/bin/grep'
HAVE_CXX20='1'
HAVE_LIBGRIB_API_FALSE=''
HAVE_LIBGRIB_API_TRUE='#'
HAVE_PYTHON_FALSE='#'
HAVE_PYTHON_TRUE=''
HDF5_INCLUDE=' -I/cm/shared/apps/hdf5/1.10.1/include'
HDF5_LIBS=' -L/cm/shared/apps/hdf5/1.10.1/lib -lhdf5'
HDF5_ROOT='/cm/shared/apps/hdf5/1.10.1'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/path/to/netcdf-c-4.7.4/lib -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib '
LIBOBJS=''
LIBS='-lnetcdf -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
NC_CONFIG='/path/to/netcdf-c-4.7.4/bin/nc-config'
NETCDF_INCLUDE=' -I/path/to/netcdf-c-4.7.4/include'
NETCDF_LIBS=' -L/path/to/netcdf-c-4.7.4/lib -lnetcdf'
NETCDF_ROOT='/path/to/netcdf-c-4.7.4'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OSSP_UUIDROOT=''
OSSP_UUID_C_INCLUDE=''
OSSP_UUID_C_LIB=''
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 2.4.2'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='2.4.2'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc'
PTHREAD_CFLAGS='-pthread'
PTHREAD_LIBS='-lpthread'
PYTHON='/usr/bin/python'
PYTHON_EXEC_PREFIX='${exec_prefix}'
PYTHON_PLATFORM='linux'
PYTHON_PREFIX='${prefix}'
PYTHON_VERSION='3.6'
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-pc-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USE_F77_FALSE='#'
USE_F77_TRUE=''
UTIL_LINUX_UUIDROOT=''
UTIL_LINUX_UUID_C_INCLUDE=''
UTIL_LINUX_UUID_C_LIB='-luuid'
UUID_C_INCLUDE=''
UUID_C_LIB='-luuid'
VERSION='2.4.2'
XML2_LIBS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_F77='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /path/to/me/cdo-2.4.2/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
pkgpyexecdir='${pyexecdir}/cdo'
pkgpythondir='${pythondir}/cdo'
prefix='/path/to/cdo/2.4.2'
program_transform_name='s,x,x,'
psdir='${docdir}'
pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages'
pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs_extra=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

configure: exit 1
    (1-1/1)