This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 2.4.2, which was generated by GNU Autoconf 2.72. Invocation command line was $ ./configure --prefix=/path/to/cdo/2.4.2 --with-netcdf=/path/to/netcdf-c-4.7.4 --with-hdf5=/cm/shared/apps/hdf5/1.10.1 ## --------- ## ## Platform. ## ## --------- ## hostname = g176 uname -m = x86_64 uname -r = 4.18.0-193.el8.x86_64 uname -s = Linux uname -v = #1 SMP Fri Mar 27 14:35:58 UTC 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /path/to/gcc/gcc-13.0.1/bin/ PATH: /path/to/netcdf-c-4.7.4/bin/ PATH: /cm/shared/apps/hdf5/1.10.1/bin/ PATH: /path/to/anaconda3-2021.11/condabin/ PATH: /cm/shared/apps/slurm/current/sbin/ PATH: /cm/shared/apps/slurm/current/bin/ PATH: /usr/local/bin/ PATH: /usr/bin/ PATH: /usr/local/sbin/ PATH: /usr/sbin/ PATH: /opt/dell/srvadmin/bin/ PATH: /path/to/me/.local/bin/ PATH: /path/to/me/bin/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:3341: looking for aux files: tap-driver.sh ltmain.sh compile ar-lib missing install-sh config.guess config.sub configure:3354: trying ./config/ configure:3383: ./config/tap-driver.sh found configure:3383: ./config/ltmain.sh found configure:3383: ./config/compile found configure:3383: ./config/ar-lib found configure:3383: ./config/missing found configure:3365: ./config/install-sh found configure:3383: ./config/config.guess found configure:3383: ./config/config.sub found configure:3510: checking build system type configure:3526: result: x86_64-pc-linux-gnu configure:3546: checking host system type configure:3561: result: x86_64-pc-linux-gnu configure:3601: checking for a BSD-compatible install configure:3675: result: /usr/bin/install -c configure:3686: checking whether build environment is sane configure:3741: result: yes configure:3902: checking for a race-free mkdir -p configure:3945: result: /usr/bin/mkdir -p configure:3952: checking for gawk configure:3973: found /usr/bin/gawk configure:3985: result: gawk configure:3996: checking whether make sets $(MAKE) configure:4020: result: yes configure:4050: checking whether make supports nested variables configure:4069: result: yes configure:4209: checking whether to enable maintainer-specific portions of Makefiles configure:4220: result: no configure:4248: checking whether make supports the include directive configure:4263: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:4266: $? = 0 configure:4285: result: yes (GNU style) configure:4362: checking for gcc configure:4383: found /path/to/gcc/gcc-13.0.1/bin/gcc configure:4395: result: gcc configure:4754: checking for C compiler version configure:4763: gcc --version >&5 gcc (GCC) 13.0.1 20230412 (experimental) Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4774: $? = 0 configure:4763: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.0.1 20230412 (experimental) (GCC) configure:4774: $? = 0 configure:4763: gcc -V >&5 gcc: error: unrecognized command-line option '-V' gcc: fatal error: no input files compilation terminated. configure:4774: $? = 1 configure:4763: gcc -qversion >&5 gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:4774: $? = 1 configure:4763: gcc -version >&5 gcc: error: unrecognized command-line option '-version' gcc: fatal error: no input files compilation terminated. configure:4774: $? = 1 configure:4794: checking whether the C compiler works configure:4816: gcc conftest.c >&5 configure:4820: $? = 0 configure:4871: result: yes configure:4875: checking for C compiler default output file name configure:4877: result: a.out configure:4883: checking for suffix of executables configure:4890: gcc -o conftest conftest.c >&5 configure:4894: $? = 0 configure:4918: result: configure:4942: checking whether we are cross compiling configure:4950: gcc -o conftest conftest.c >&5 configure:4954: $? = 0 configure:4961: ./conftest configure:4965: $? = 0 configure:4980: result: no configure:4986: checking for suffix of object files configure:5009: gcc -c conftest.c >&5 configure:5013: $? = 0 configure:5037: result: o configure:5041: checking whether the compiler supports GNU C configure:5061: gcc -c conftest.c >&5 configure:5061: $? = 0 configure:5073: result: yes configure:5084: checking whether gcc accepts -g configure:5105: gcc -c -g conftest.c >&5 configure:5105: $? = 0 configure:5152: result: yes configure:5172: checking for gcc option to enable C11 features configure:5187: gcc -c -g -O2 conftest.c >&5 configure:5187: $? = 0 configure:5206: result: none needed configure:5330: checking whether gcc understands -c and -o together configure:5353: gcc -c conftest.c -o conftest2.o configure:5356: $? = 0 configure:5353: gcc -c conftest.c -o conftest2.o configure:5356: $? = 0 configure:5369: result: yes configure:5388: checking dependency style of gcc configure:5501: result: gcc3 configure:5573: checking for ar configure:5594: found /usr/bin/ar configure:5606: result: ar configure:5632: checking the archiver (ar) interface configure:5649: gcc -c -g -O2 conftest.c >&5 configure:5649: $? = 0 configure:5652: ar cru libconftest.a conftest.o >&5 configure:5655: $? = 0 configure:5684: result: ar configure:5705: setting up libtool configure:5754: checking how to print strings configure:5781: result: printf configure:5802: checking for a sed that does not truncate output configure:5874: result: /usr/bin/sed configure:5892: checking for grep that handles long lines and -e configure:5958: result: /usr/bin/grep configure:5963: checking for egrep configure:6033: result: /usr/bin/grep -E configure:6040: checking for fgrep configure:6110: result: /usr/bin/grep -F configure:6147: checking for ld used by gcc configure:6216: result: /usr/bin/ld configure:6223: checking if the linker (/usr/bin/ld) is GNU ld configure:6240: result: yes configure:6252: checking for BSD- or MS-compatible name lister (nm) configure:6308: result: /usr/bin/nm -B configure:6450: checking the name lister (/usr/bin/nm -B) interface configure:6458: gcc -c -g -O2 conftest.c >&5 configure:6461: /usr/bin/nm -B "conftest.o" configure:6464: output 0000000000000000 B some_variable configure:6472: result: BSD nm configure:6475: checking whether ln -s works configure:6479: result: yes configure:6487: checking the maximum length of command line arguments configure:6620: result: 3458764513820540925 configure:6668: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:6710: result: func_convert_file_noop configure:6717: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:6739: result: func_convert_file_noop configure:6746: checking for /usr/bin/ld option to reload object files configure:6755: result: -r configure:6835: checking for file configure:6856: found /usr/bin/file configure:6868: result: file configure:6945: checking for objdump configure:6966: found /usr/bin/objdump configure:6978: result: objdump configure:7010: checking how to recognize dependent libraries configure:7212: result: pass_all configure:7303: checking for dlltool configure:7339: result: no configure:7369: checking how to associate runtime and link libraries configure:7398: result: printf %s\n configure:7550: checking for archiver @FILE support configure:7568: gcc -c -g -O2 conftest.c >&5 configure:7568: $? = 0 configure:7572: ar cr libconftest.a @conftest.lst >&5 configure:7575: $? = 0 configure:7580: ar cr libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:7583: $? = 1 configure:7596: result: @ configure:7660: checking for strip configure:7681: found /usr/bin/strip configure:7693: result: strip configure:7771: checking for ranlib configure:7792: found /usr/bin/ranlib configure:7804: result: ranlib configure:7906: checking command to parse /usr/bin/nm -B output from gcc object configure:8060: gcc -c -g -O2 conftest.c >&5 configure:8063: $? = 0 configure:8067: /usr/bin/nm -B conftest.o \| /usr/bin/sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | /usr/bin/sed '/ __gnu_lto/d' \> conftest.nm configure:8070: $? = 0 configure:8136: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:8139: $? = 0 configure:8178: result: ok configure:8225: checking for sysroot configure:8257: result: no configure:8264: checking for a working dd configure:8309: result: /usr/bin/dd configure:8313: checking how to truncate binary pipes configure:8330: result: /usr/bin/dd bs=4096 count=1 configure:8467: gcc -c -g -O2 conftest.c >&5 configure:8470: $? = 0 configure:8670: checking for mt configure:8706: result: no configure:8726: checking if : is a manifest tool configure:8733: : '-?' configure:8742: result: no configure:9481: checking for stdio.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for stdlib.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for string.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for inttypes.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for stdint.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for strings.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for sys/stat.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for sys/types.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for unistd.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9481: checking for sys/param.h configure:9481: gcc -c -g -O2 conftest.c >&5 configure:9481: $? = 0 configure:9481: result: yes configure:9506: checking for dlfcn.h configure:9506: gcc -c -g -O2 conftest.c >&5 configure:9506: $? = 0 configure:9506: result: yes configure:9771: checking for objdir configure:9788: result: .libs configure:10054: checking if gcc supports -fno-rtti -fno-exceptions configure:10073: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command-line option '-fno-rtti' is valid for C++/D/ObjC++ but not for C configure:10077: $? = 0 configure:10091: result: no configure:10449: checking for gcc option to produce PIC configure:10458: result: -fPIC -DPIC configure:10466: checking if gcc PIC flag -fPIC -DPIC works configure:10485: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:10489: $? = 0 configure:10503: result: yes configure:10532: checking if gcc static flag -static works configure:10562: result: no configure:10577: checking if gcc supports -c -o file.o configure:10599: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:10603: $? = 0 configure:10626: result: yes configure:10634: checking if gcc supports -c -o file.o configure:10683: result: yes configure:10716: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11989: result: yes configure:12026: checking whether -lc should be explicitly linked in configure:12035: gcc -c -g -O2 conftest.c >&5 configure:12038: $? = 0 configure:12053: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:12056: $? = 0 configure:12071: result: no configure:12231: checking dynamic linker characteristics configure:12813: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:12813: $? = 0 configure:13053: result: GNU/Linux ld.so configure:13175: checking how to hardcode library paths into programs configure:13200: result: immediate configure:13800: checking whether stripping libraries is possible configure:13809: result: yes configure:13851: checking if libtool supports shared libraries configure:13853: result: yes configure:13856: checking whether to build shared libraries configure:13881: result: yes configure:13884: checking whether to build static libraries configure:13888: result: yes configure:13964: checking for a Python interpreter with version >= 3.6 configure:13982: python -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '3.6'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) configure:13985: $? = 0 configure:13993: result: python configure:14001: checking for python configure:14024: found /usr/bin/python configure:14037: result: /usr/bin/python configure:14054: checking for python version configure:14063: result: 3.6 configure:14068: checking for python platform configure:14077: result: linux configure:14140: checking for GNU default python prefix configure:14142: result: ${prefix} configure:14210: checking for GNU default python exec_prefix configure:14212: result: ${exec_prefix} configure:14245: checking for python script directory (pythondir) configure:14281: result: ${PYTHON_PREFIX}/lib/python3.6/site-packages configure:14289: checking for python extension module directory (pyexecdir) configure:14325: result: ${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages configure:14398: checking for bash configure:14434: result: /bin/sh configure:14507: checking for gcc configure:14540: result: gcc configure:14611: checking for g++ configure:14632: found /path/to/gcc/gcc-13.0.1/bin/g++ configure:14644: result: g++ configure:14798: checking for C++ compiler version configure:14807: g++ --version >&5 g++ (GCC) 13.0.1 20230412 (experimental) Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:14818: $? = 0 configure:14807: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.0.1 20230412 (experimental) (GCC) configure:14818: $? = 0 configure:14807: g++ -V >&5 g++: error: unrecognized command-line option '-V' g++: fatal error: no input files compilation terminated. configure:14818: $? = 1 configure:14807: g++ -qversion >&5 g++: error: unrecognized command-line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:14818: $? = 1 configure:14822: checking whether the compiler supports GNU C++ configure:14842: g++ -c conftest.cpp >&5 configure:14842: $? = 0 configure:14854: result: yes configure:14865: checking whether g++ accepts -g configure:14886: g++ -c -g conftest.cpp >&5 configure:14886: $? = 0 configure:14933: result: yes configure:14953: checking for g++ option to enable C++11 features configure:14968: g++ -c -g -O2 conftest.cpp >&5 conftest.cpp: In function 'int main(int, char**)': conftest.cpp:191:25: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 191 | cxx11test::delegate d2(); | ^~ conftest.cpp:191:25: note: remove parentheses to default-initialize a variable 191 | cxx11test::delegate d2(); | ^~ | -- conftest.cpp:191:25: note: or replace parentheses with braces to value-initialize a variable configure:14968: $? = 0 configure:14987: result: none needed configure:15058: checking dependency style of g++ configure:15171: result: gcc3 configure:15204: checking how to run the C++ preprocessor configure:15226: g++ -E conftest.cpp configure:15226: $? = 0 configure:15242: g++ -E conftest.cpp conftest.cpp:25:10: fatal error: ac_nonexistent.h: No such file or directory 25 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:15242: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15271: result: g++ -E configure:15285: g++ -E conftest.cpp configure:15285: $? = 0 configure:15301: g++ -E conftest.cpp conftest.cpp:25:10: fatal error: ac_nonexistent.h: No such file or directory 25 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:15301: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15469: checking for ld used by g++ configure:15538: result: /usr/bin/ld -m elf_x86_64 configure:15545: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:15562: result: yes configure:15617: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16697: result: yes configure:16733: g++ -c -g -O2 conftest.cpp >&5 configure:16736: $? = 0 configure:17217: checking for g++ option to produce PIC configure:17226: result: -fPIC -DPIC configure:17234: checking if g++ PIC flag -fPIC -DPIC works configure:17253: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:17257: $? = 0 configure:17271: result: yes configure:17294: checking if g++ static flag -static works configure:17324: result: no configure:17336: checking if g++ supports -c -o file.o configure:17358: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:17362: $? = 0 configure:17385: result: yes configure:17390: checking if g++ supports -c -o file.o configure:17439: result: yes configure:17469: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17509: result: yes configure:17652: checking dynamic linker characteristics configure:18401: result: GNU/Linux ld.so configure:18466: checking how to hardcode library paths into programs configure:18491: result: immediate configure:18590: checking for g77 configure:18626: result: no configure:18590: checking for xlf configure:18626: result: no configure:18590: checking for f77 configure:18626: result: no configure:18590: checking for frt configure:18626: result: no configure:18590: checking for pgf77 configure:18626: result: no configure:18590: checking for cf77 configure:18626: result: no configure:18590: checking for fort77 configure:18626: result: no configure:18590: checking for fl32 configure:18626: result: no configure:18590: checking for af77 configure:18626: result: no configure:18590: checking for xlf90 configure:18626: result: no configure:18590: checking for f90 configure:18626: result: no configure:18590: checking for pgf90 configure:18626: result: no configure:18590: checking for pghpf configure:18626: result: no configure:18590: checking for epcf90 configure:18626: result: no configure:18590: checking for gfortran configure:18611: found /path/to/gcc/gcc-13.0.1/bin/gfortran configure:18623: result: gfortran configure:18649: checking for Fortran 77 compiler version configure:18658: gfortran --version >&5 GNU Fortran (GCC) 13.0.1 20230412 (experimental) Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:18669: $? = 0 configure:18658: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/path/to/gcc/gcc-13.0.1/bin/../libexec/gcc/x86_64-pc-linux-gnu/13.0.1/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ../gcc/configure --prefix=/path/to/gcc/gcc-12.2.0 --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran,go,objc,obj-c++ --disable-multilib --with-system-zlib --enable-default-pie --enable-default-ssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.0.1 20230412 (experimental) (GCC) configure:18669: $? = 0 configure:18658: gfortran -V >&5 gfortran: error: unrecognized command-line option '-V' gfortran: fatal error: no input files compilation terminated. configure:18669: $? = 1 configure:18658: gfortran -qversion >&5 gfortran: error: unrecognized command-line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:18669: $? = 1 configure:18678: checking whether the compiler supports GNU Fortran 77 configure:18692: gfortran -c conftest.F >&5 configure:18692: $? = 0 configure:18704: result: yes configure:18712: checking whether gfortran accepts -g configure:18724: gfortran -c -g conftest.f >&5 configure:18724: $? = 0 configure:18735: result: yes configure:18864: checking if libtool supports shared libraries configure:18866: result: yes configure:18869: checking whether to build shared libraries configure:18893: result: yes configure:18896: checking whether to build static libraries configure:18900: result: yes configure:19252: checking for gfortran option to produce PIC configure:19261: result: -fPIC configure:19269: checking if gfortran PIC flag -fPIC works configure:19288: gfortran -c -g -O2 -fPIC conftest.f >&5 configure:19292: $? = 0 configure:19306: result: yes configure:19329: checking if gfortran static flag -static works configure:19359: result: no configure:19371: checking if gfortran supports -c -o file.o configure:19393: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:19397: $? = 0 configure:19420: result: yes configure:19425: checking if gfortran supports -c -o file.o configure:19474: result: yes configure:19504: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:20725: result: yes configure:20868: checking dynamic linker characteristics configure:21611: result: GNU/Linux ld.so configure:21676: checking how to hardcode library paths into programs configure:21701: result: immediate configure:21734: checking for C/C++ restrict keyword configure:21764: gcc -c -g -O2 conftest.c >&5 configure:21764: $? = 0 configure:21774: result: __restrict__ configure:21793: checking whether g++ supports C++20 features by default configure:22618: g++ -c -g -O2 conftest.cpp >&5 conftest.cpp:823:2: error: #error "This is not a C++20 compiler" 823 | #error "This is not a C++20 compiler" | ^~~~~ configure:22618: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | /* end confdefs.h. */ | | | // If the compiler admits that it is not ready for C++11, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | // MSVC always sets __cplusplus to 199711L in older versions; newer versions | // only set it correctly if /Zc:__cplusplus is specified as well as a | // /std:c++NN switch: | // https://devblogs.microsoft.com/cppblog/msvc-now-correctly-reports-__cplusplus/ | #elif __cplusplus < 201103L && !defined _MSC_VER | | #error "This is not a C++11 compiler" | | #else | | namespace cxx11 | { | | namespace test_static_assert | { | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | } | | namespace test_final_override | { | | struct Base | { | virtual ~Base() {} | virtual void f() {} | }; | | struct Derived : public Base | { | virtual ~Derived() override {} | virtual void f() override {} | }; | | } | | namespace test_double_right_angle_brackets | { | | template < typename T > | struct check {}; | | typedef check single_type; | typedef check> double_type; | typedef check>> triple_type; | typedef check>>> quadruple_type; | | } | | namespace test_decltype | { | | int | f() | { | int a = 1; | decltype(a) b = 2; | return a + b; | } | | } | | namespace test_type_deduction | { | | template < typename T1, typename T2 > | struct is_same | { | static const bool value = false; | }; | | template < typename T > | struct is_same | { | static const bool value = true; | }; | | template < typename T1, typename T2 > | auto | add(T1 a1, T2 a2) -> decltype(a1 + a2) | { | return a1 + a2; | } | | int | test(const int c, volatile int v) | { | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == false, ""); | auto ac = c; | auto av = v; | auto sumi = ac + av + 'x'; | auto sumf = ac + av + 1.0; | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == true, ""); | return (sumf > 0.0) ? sumi : add(c, v); | } | | } | | namespace test_noexcept | { | | int f() { return 0; } | int g() noexcept { return 0; } | | static_assert(noexcept(f()) == false, ""); | static_assert(noexcept(g()) == true, ""); | | } | | namespace test_constexpr | { | | template < typename CharT > | unsigned long constexpr | strlen_c_r(const CharT *const s, const unsigned long acc) noexcept | { | return *s ? strlen_c_r(s + 1, acc + 1) : acc; | } | | template < typename CharT > | unsigned long constexpr | strlen_c(const CharT *const s) noexcept | { | return strlen_c_r(s, 0UL); | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("1") == 1UL, ""); | static_assert(strlen_c("example") == 7UL, ""); | static_assert(strlen_c("another\0example") == 7UL, ""); | | } | | namespace test_rvalue_references | { | | template < int N > | struct answer | { | static constexpr int value = N; | }; | | answer<1> f(int&) { return answer<1>(); } | answer<2> f(const int&) { return answer<2>(); } | answer<3> f(int&&) { return answer<3>(); } | | void | test() | { | int i = 0; | const int c = 0; | static_assert(decltype(f(i))::value == 1, ""); | static_assert(decltype(f(c))::value == 2, ""); | static_assert(decltype(f(0))::value == 3, ""); | } | | } | | namespace test_uniform_initialization | { | | struct test | { | static const int zero {}; | static const int one {1}; | }; | | static_assert(test::zero == 0, ""); | static_assert(test::one == 1, ""); | | } | | namespace test_lambdas | { | | void | test1() | { | auto lambda1 = [](){}; | auto lambda2 = lambda1; | lambda1(); | lambda2(); | } | | int | test2() | { | auto a = [](int i, int j){ return i + j; }(1, 2); | auto b = []() -> int { return '0'; }(); | auto c = [=](){ return a + b; }(); | auto d = [&](){ return c; }(); | auto e = [a, &b](int x) mutable { | const auto identity = [](int y){ return y; }; | for (auto i = 0; i < a; ++i) | a += b--; | return x + identity(a + b); | }(0); | return a + b + c + d + e; | } | | int | test3() | { | const auto nullary = [](){ return 0; }; | const auto unary = [](int x){ return x; }; | using nullary_t = decltype(nullary); | using unary_t = decltype(unary); | const auto higher1st = [](nullary_t f){ return f(); }; | const auto higher2nd = [unary](nullary_t f1){ | return [unary, f1](unary_t f2){ return f2(unary(f1())); }; | }; | return higher1st(nullary) + higher2nd(nullary)(unary); | } | | } | | namespace test_variadic_templates | { | | template | struct sum; | | template | struct sum | { | static constexpr auto value = N0 + sum::value; | }; | | template <> | struct sum<> | { | static constexpr auto value = 0; | }; | | static_assert(sum<>::value == 0, ""); | static_assert(sum<1>::value == 1, ""); | static_assert(sum<23>::value == 23, ""); | static_assert(sum<1, 2>::value == 3, ""); | static_assert(sum<5, 5, 11>::value == 21, ""); | static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, ""); | | } | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function | // because of this. | namespace test_template_alias_sfinae | { | | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { func(0); } | | } | | } // namespace cxx11 | | #endif // __cplusplus >= 201103L | | | | | // If the compiler admits that it is not ready for C++14, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201402L && !defined _MSC_VER | | #error "This is not a C++14 compiler" | | #else | | namespace cxx14 | { | | namespace test_polymorphic_lambdas | { | | int | test() | { | const auto lambda = [](auto&&... args){ | const auto istiny = [](auto x){ | return (sizeof(x) == 1UL) ? 1 : 0; | }; | const int aretiny[] = { istiny(args)... }; | return aretiny[0]; | }; | return lambda(1, 1L, 1.0f, '1'); | } | | } | | namespace test_binary_literals | { | | constexpr auto ivii = 0b0000000000101010; | static_assert(ivii == 42, "wrong value"); | | } | | namespace test_generalized_constexpr | { | | template < typename CharT > | constexpr unsigned long | strlen_c(const CharT *const s) noexcept | { | auto length = 0UL; | for (auto p = s; *p; ++p) | ++length; | return length; | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("x") == 1UL, ""); | static_assert(strlen_c("test") == 4UL, ""); | static_assert(strlen_c("another\0test") == 7UL, ""); | | } | | namespace test_lambda_init_capture | { | | int | test() | { | auto x = 0; | const auto lambda1 = [a = x](int b){ return a + b; }; | const auto lambda2 = [a = lambda1(x)](){ return a; }; | return lambda2(); | } | | } | | namespace test_digit_separators | { | | constexpr auto ten_million = 100'000'000; | static_assert(ten_million == 100000000, ""); | | } | | namespace test_return_type_deduction | { | | auto f(int& x) { return x; } | decltype(auto) g(int& x) { return x; } | | template < typename T1, typename T2 > | struct is_same | { | static constexpr auto value = false; | }; | | template < typename T > | struct is_same | { | static constexpr auto value = true; | }; | | int | test() | { | auto x = 0; | static_assert(is_same::value, ""); | static_assert(is_same::value, ""); | return x; | } | | } | | } // namespace cxx14 | | #endif // __cplusplus >= 201402L | | | | | // If the compiler admits that it is not ready for C++17, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201703L && !defined _MSC_VER | | #error "This is not a C++17 compiler" | | #else | | #include | #include | #include | | namespace cxx17 | { | | namespace test_constexpr_lambdas | { | | constexpr int foo = [](){return 42;}(); | | } | | namespace test::nested_namespace::definitions | { | | } | | namespace test_fold_expression | { | | template | int multiply(Args... args) | { | return (args * ... * 1); | } | | template | bool all(Args... args) | { | return (args && ...); | } | | } | | namespace test_extended_static_assert | { | | static_assert (true); | | } | | namespace test_auto_brace_init_list | { | | auto foo = {5}; | auto bar {5}; | | static_assert(std::is_same, decltype(foo)>::value); | static_assert(std::is_same::value); | } | | namespace test_typename_in_template_template_parameter | { | | template typename X> struct D; | | } | | namespace test_fallthrough_nodiscard_maybe_unused_attributes | { | | int f1() | { | return 42; | } | | [[nodiscard]] int f2() | { | [[maybe_unused]] auto unused = f1(); | | switch (f1()) | { | case 17: | f1(); | [[fallthrough]]; | case 42: | f1(); | } | return f1(); | } | | } | | namespace test_extended_aggregate_initialization | { | | struct base1 | { | int b1, b2 = 42; | }; | | struct base2 | { | base2() { | b3 = 42; | } | int b3; | }; | | struct derived : base1, base2 | { | int d; | }; | | derived d1 {{1, 2}, {}, 4}; // full initialization | derived d2 {{}, {}, 4}; // value-initialized bases | | } | | namespace test_general_range_based_for_loop | { | | struct iter | { | int i; | | int& operator* () | { | return i; | } | | const int& operator* () const | { | return i; | } | | iter& operator++() | { | ++i; | return *this; | } | }; | | struct sentinel | { | int i; | }; | | bool operator== (const iter& i, const sentinel& s) | { | return i.i == s.i; | } | | bool operator!= (const iter& i, const sentinel& s) | { | return !(i == s); | } | | struct range | { | iter begin() const | { | return {0}; | } | | sentinel end() const | { | return {5}; | } | }; | | void f() | { | range r {}; | | for (auto i : r) | { | [[maybe_unused]] auto v = i; | } | } | | } | | namespace test_lambda_capture_asterisk_this_by_value | { | | struct t | { | int i; | int foo() | { | return [*this]() | { | return i; | }(); | } | }; | | } | | namespace test_enum_class_construction | { | | enum class byte : unsigned char | {}; | | byte foo {42}; | | } | | namespace test_constexpr_if | { | | template | int f () | { | if constexpr(cond) | { | return 13; | } | else | { | return 42; | } | } | | } | | namespace test_selection_statement_with_initializer | { | | int f() | { | return 13; | } | | int f2() | { | if (auto i = f(); i > 0) | { | return 3; | } | | switch (auto i = f(); i + 4) | { | case 17: | return 2; | | default: | return 1; | } | } | | } | | namespace test_template_argument_deduction_for_class_templates | { | | template | struct pair | { | pair (T1 p1, T2 p2) | : m1 {p1}, | m2 {p2} | {} | | T1 m1; | T2 m2; | }; | | void f() | { | [[maybe_unused]] auto p = pair{13, 42u}; | } | | } | | namespace test_non_type_auto_template_parameters | { | | template | struct B | {}; | | B<5> b1; | B<'a'> b2; | | } | | namespace test_structured_bindings | { | | int arr[2] = { 1, 2 }; | std::pair pr = { 1, 2 }; | | auto f1() -> int(&)[2] | { | return arr; | } | | auto f2() -> std::pair& | { | return pr; | } | | struct S | { | int x1 : 2; | volatile double y1; | }; | | S f3() | { | return {}; | } | | auto [ x1, y1 ] = f1(); | auto& [ xr1, yr1 ] = f1(); | auto [ x2, y2 ] = f2(); | auto& [ xr2, yr2 ] = f2(); | const auto [ x3, y3 ] = f3(); | | } | | namespace test_exception_spec_type_system | { | | struct Good {}; | struct Bad {}; | | void g1() noexcept; | void g2(); | | template | Bad | f(T*, T*); | | template | Good | f(T1*, T2*); | | static_assert (std::is_same_v); | | } | | namespace test_inline_variables | { | | template void f(T) | {} | | template inline T g(T) | { | return T{}; | } | | template<> inline void f<>(int) | {} | | template<> int g<>(int) | { | return 5; | } | | } | | } // namespace cxx17 | | #endif // __cplusplus < 201703L && !defined _MSC_VER | | | | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 202002L && !defined _MSC_VER | | #error "This is not a C++20 compiler" | | #else | | #include | | namespace cxx20 | { | | // As C++20 supports feature test macros in the standard, there is no | // immediate need to actually test for feature availability on the | // Autoconf side. | | } // namespace cxx20 | | #endif // __cplusplus < 202002L && !defined _MSC_VER | | | configure:22628: result: no configure:22638: checking whether g++ supports C++20 features with -std=gnu++20 configure:23465: g++ -std=gnu++20 -c -g -O2 conftest.cpp >&5 conftest.cpp:125:36: warning: 'volatile'-qualified parameter is deprecated [-Wvolatile] 125 | test(const int c, volatile int v) | ~~~~~~~~~~~~~^ configure:23465: $? = 0 configure:23477: result: yes configure:24388: checking for gcc option to support OpenMP configure:24410: gcc -c -g -O2 conftest.c >&5 conftest.c:29:2: error: #error "OpenMP not supported" 29 | #error "OpenMP not supported" | ^~~~~ configure:24410: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | #error "OpenMP not supported" | #endif | #include | int main (void) { return omp_get_num_threads (); } | configure:24410: gcc -c -g -O2 -fopenmp conftest.c >&5 configure:24410: $? = 0 configure:24422: gcc -o conftest -g -O2 -fopenmp conftest.c >&5 configure:24422: $? = 0 configure:24447: result: -fopenmp configure:24505: checking for ar configure:24538: result: ar configure:24609: checking for cpp configure:24630: found /path/to/gcc/gcc-13.0.1/bin/cpp configure:24642: result: cpp configure:24713: checking for ld configure:24746: result: /usr/bin/ld -m elf_x86_64 configure:24817: checking for nm configure:24850: result: /usr/bin/nm -B configure:24921: checking for ar configure:24954: result: ar configure:25025: checking for as configure:25046: found /usr/bin/as configure:25058: result: as configure:25129: checking for dlltool configure:25162: result: false configure:25233: checking for objdump configure:25266: result: objdump configure:25337: checking for strip configure:25370: result: strip configure:25441: checking for ranlib configure:25474: result: ranlib configure:25510: checking for gcc option to enable large file support configure:25545: gcc -c -g -O2 conftest.c >&5 configure:25545: $? = 0 configure:25551: gcc -DFTYPE=ino_t -c -g -O2 conftest.c >&5 configure:25551: $? = 0 configure:25576: result: none needed configure:25685: checking for getpagesize configure:25685: gcc -o conftest -g -O2 conftest.c >&5 configure:25685: $? = 0 configure:25685: result: yes configure:25696: checking for working mmap configure:25846: gcc -o conftest -g -O2 conftest.c >&5 configure:25846: $? = 0 configure:25846: ./conftest configure:25846: $? = 0 configure:25860: result: yes configure:25871: checking for struct stat.st_blksize configure:25871: gcc -c -g -O2 conftest.c >&5 configure:25871: $? = 0 configure:25871: result: yes configure:25882: checking for mallinfo configure:25882: gcc -o conftest -g -O2 conftest.c >&5 configure:25882: $? = 0 configure:25882: result: yes configure:25889: checking for backtrace configure:25889: gcc -o conftest -g -O2 conftest.c >&5 configure:25889: $? = 0 configure:25889: result: yes configure:25898: checking for getrlimit configure:25898: gcc -o conftest -g -O2 conftest.c >&5 configure:25898: $? = 0 configure:25898: result: yes configure:25966: checking for fenv_t.__control configure:25966: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:43:13: error: 'fenv_t' has no member named '__control'; did you mean '__control_word'? 43 | if (ac_aggr.__control) | ^~~~~~~~~ | __control_word configure:25966: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | /* end confdefs.h. */ | #include | | int | main (void) | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:25966: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:43:20: error: 'fenv_t' has no member named '__control'; did you mean '__control_word'? 43 | if (sizeof ac_aggr.__control) | ^~~~~~~~~ | __control_word configure:25966: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | /* end confdefs.h. */ | #include | | int | main (void) | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:25966: result: no configure:25975: checking for fenv_t.__mxcsr configure:25975: gcc -c -g -O2 conftest.c >&5 configure:25975: $? = 0 configure:25975: result: yes configure:26000: checking C preprocessor flags for Fortran calling convention cfortran.h configure:26105: result: -DgFortran (probed) configure:26144: checking if C externals constructed with cfortran.h work configure:26205: gcc -c -g -O2 -I./src -DgFortran conftest.c >&5 configure:26205: $? = 0 configure:26207: Renaming C object file. configure:26210: $? = 0 configure:26228: gfortran -c -g -O2 conftest.f >&5 configure:26228: $? = 0 configure:26230: Renaming Fortran object file. configure:26233: $? = 0 configure:26290: gfortran -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o >&5 configure:26290: $? = 0 configure:26290: ./conftest configure:26290: $? = 0 configure:26330: result: yes configure:26398: checking how to run the C preprocessor configure:26469: result: cpp configure:26483: cpp -DgFortran conftest.c configure:26483: $? = 0 configure:26499: cpp -DgFortran conftest.c conftest.c:39:10: fatal error: ac_nonexistent.h: No such file or directory 39 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:26499: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | /* end confdefs.h. */ | #include configure:26532: checking for egrep -e configure:26662: result: /usr/bin/grep -E configure:26669: checking for gcc options needed to detect all undeclared functions configure:26691: gcc -c -g -O2 -fopenmp -DgFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:43:8: error: 'strchr' undeclared (first use in this function) 43 | (void) strchr; | ^~~~~~ conftest.c:1:1: note: 'strchr' is defined in header ''; did you forget to '#include '? 1 | /* confdefs.h */ conftest.c:43:8: note: each undeclared identifier is reported only once for each function it appears in 43 | (void) strchr; | ^~~~~~ configure:26691: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | /* end confdefs.h. */ | | int | main (void) | { | (void) strchr; | ; | return 0; | } configure:26718: gcc -c -g -O2 -fopenmp -DgFortran conftest.c >&5 configure:26718: $? = 0 configure:26738: result: none needed configure:26939: checking whether gcc is Clang configure:26967: result: no configure:27033: checking whether pthreads work with "-pthread" and "-lpthread" configure:27145: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:27145: $? = 0 configure:27155: result: yes configure:27279: checking for joinable pthread attribute configure:27298: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:27298: $? = 0 configure:27308: result: PTHREAD_CREATE_JOINABLE configure:27321: checking whether more special flags are required for pthreads configure:27336: result: no configure:27345: checking for PTHREAD_PRIO_INHERIT configure:27363: gcc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:27363: $? = 0 configure:27375: result: yes configure:27753: checking for szlib library configure:27755: result: suppressed configure:27943: checking for hdf5.h configure:27943: gcc -c -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:27943: $? = 0 configure:27943: result: yes configure:27950: checking for library containing H5Fopen configure:27986: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/ccaJQai5.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `H5Fopen' collect2: error: ld returned 1 exit status configure:27986: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (void); | int | main (void) | { | return H5Fopen (); | ; | return 0; | } configure:27986: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5 -lpthread >&5 configure:27986: $? = 0 configure:28008: result: -lhdf5 configure:28022: checking for library containing H5DSis_scale configure:28058: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5 -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/cc9CRHch.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `H5DSis_scale' collect2: error: ld returned 1 exit status configure:28058: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (void); | int | main (void) | { | return H5DSis_scale (); | ; | return 0; | } configure:28058: gcc -o conftest -g -O2 -fopenmp -pthread -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 configure:28058: $? = 0 configure:28080: result: -lhdf5_hl configure:28342: checking for netcdf.h configure:28342: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:28342: $? = 0 configure:28342: result: yes configure:28348: checking for netcdf_meta.h configure:28348: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:28348: $? = 0 configure:28348: result: yes configure:28355: checking for library containing nc_open configure:28391: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/cchuzM6p.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `nc_open' collect2: error: ld returned 1 exit status configure:28391: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_NETCDF_META_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (void); | int | main (void) | { | return nc_open (); | ; | return 0; | } configure:28391: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 configure:28391: $? = 0 configure:28413: result: -lnetcdf configure:28430: checking nc-config script configure:28434: checking for nc-config configure:28455: found /path/to/netcdf-c-4.7.4/bin/nc-config configure:28467: result: /path/to/netcdf-c-4.7.4/bin/nc-config configure:28477: checking netcdf's OpenDAP support configure:28484: result: yes configure:28491: checking netcdf's nc2 support configure:28499: result: yes configure:28506: checking netcdf's nc4 support configure:28514: result: yes configure:28521: checking netcdf's nc4/hdf5 support configure:28529: result: yes configure:28560: checking for library containing H5TS_mutex_lock configure:28596: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/cclPXqLx.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:28596: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_NETCDF_META_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (void); | int | main (void) | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:28596: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/ccotbxOk.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:28596: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_NETCDF_META_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (void); | int | main (void) | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:28618: result: no configure:28633: checking for library containing H5dont_atexit configure:28669: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 configure:28669: $? = 0 configure:28691: result: none required configure:28911: checking for the UDUNITS2 library configure:28913: result: suppressed configure:29075: checking for uuid/uuid.h extra include path configure:29099: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:29099: $? = 0 configure:29134: result: (none required) configure:29164: checking for library containing uuid_generate configure:29204: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 /usr/bin/ld: Dwarf Error: Can't find .debug_ranges section. /local/cc8YdcVC.o: In function `main': conftest.c:(.text.startup+0x5): undefined reference to `uuid_generate' collect2: error: ld returned 1 exit status configure:29204: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.4.2" | #define PACKAGE_STRING "cdo 2.4.2" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.4.2" | #define PACKAGE "cdo" | #define VERSION "2.4.2" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX20 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (GCC) 13.0.1 20230412 (experimental)" | #define C_VERSION "gcc (GCC) 13.0.1 20230412 (experimental)" | #define F77_VERSION "GNU Fortran (GCC) 13.0.1 20230412 (experimental)" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_NETCDF_META_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_H5DONT_ATEXIT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. | The 'extern "C"' is for builds by C++ compilers; | although this is not generally supported in C code supporting it here | has little cost and some practical benefit (sr 110532). */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (void); | int | main (void) | { | return uuid_generate (); | ; | return 0; | } configure:29204: gcc -o conftest -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -luuid -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 configure:29204: $? = 0 configure:29297: result: -luuid configure:29324: checking for uuid/uuid.h configure:29324: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:29324: $? = 0 configure:29324: result: yes configure:29329: checking whether uuid_generate is declared configure:29329: gcc -c -g -O2 -fopenmp -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran conftest.c >&5 configure:29329: $? = 0 configure:29329: result: yes configure:30235: checking for the CMOR library configure:30237: result: suppressed configure:30435: checking for the ECCODES library configure:30437: result: suppressed configure:30447: checking for GRIB support configure:30467: result: yes configure:30473: checking for CGRIBEX support configure:30493: result: yes configure:30499: checking for SERVICE support configure:30519: result: yes configure:30525: checking for EXTRA support configure:30545: result: yes configure:30551: checking for IEG support configure:30571: result: yes configure:30577: checking for FFTW3 support configure:30867: checking for the PROJ library configure:30869: result: suppressed configure:31067: checking for the CURL library configure:31069: result: suppressed configure:31267: checking for MAGICS library configure:31269: result: suppressed configure:31480: checking for XML2 library configure:31482: result: suppressed configure:31502: checking for build a separate CDI library and link CDO to it configure:31523: result: no configure:31671: checking for building an additional static CDO binary configure:31688: result: no configure:31700: checking for HIRLAM extensions configure:31720: result: no configure:31783: checking for pthread_join using gcc -pthread -lpthread configure:31806: gcc -o conftest -g -O2 -fopenmp -pthread -pthread -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 configure:31806: $? = 0 configure:31812: result: yes configure:31916: checking whether gcc is Clang configure:31944: result: no configure:32256: checking for joinable pthread attribute configure:32285: result: PTHREAD_CREATE_JOINABLE configure:32298: checking whether more special flags are required for pthreads configure:32313: result: no configure:32322: checking for PTHREAD_PRIO_INHERIT configure:32352: result: yes configure:32741: checking for fdb5 library configure:32743: result: suppressed configure:32955: checking for szlib library configure:32957: result: suppressed configure:33124: checking for netcdf.h configure:33124: result: yes configure:33136: checking for library containing nc_open configure:33194: result: -lnetcdf configure:33213: checking for nc-config configure:33246: result: /path/to/netcdf-c-4.7.4/bin/nc-config configure:33279: checking netcdf's OpenDAP support configure:33291: result: yes configure:33300: checking netcdf's Zarr support configure:33312: result: no configure:33321: checking netcdf's nc2 support configure:33333: result: yes configure:33343: checking netcdf's nc4 support configure:33355: result: yes configure:33365: checking netcdf's nc4/hdf5 support configure:33377: result: yes configure:33387: checking netcdf's nc4/szlib support configure:33399: result: no configure:33485: checking for library containing H5get_libversion configure:33521: gcc -o conftest -g -O2 -fopenmp -pthread -pthread -I/path/to/netcdf-c-4.7.4/include -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t -L/path/to/netcdf-c-4.7.4/lib -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib conftest.c -lnetcdf -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 configure:33521: $? = 0 configure:33543: result: none required configure:33767: checking for the ECCODES library configure:33769: result: suppressed configure:33786: checking for GRIB support configure:33806: result: yes configure:33812: checking for ACROSS support configure:33832: result: yes configure:33838: checking for CGRIBEX support configure:33858: result: yes configure:33864: checking for SERVICE support configure:33884: result: yes configure:33890: checking for EXTRA support configure:33910: result: yes configure:33916: checking for IEG support configure:33936: result: yes configure:33972: checking for building an additional static CDI binary configure:33989: result: no configure:34001: checking for HIRLAM extensions configure:34021: result: no configure:34082: checking for gawk configure:34115: result: gawk configure:34259: checking that generated files are newer than configure configure:34265: result: done configure:34322: === configuring in libcdi (/path/to/me/cdo-2.4.2/libcdi) configure:34392: running /bin/sh ./configure '--prefix=/path/to/cdo/2.4.2' --disable-option-checking '--with-netcdf=/path/to/netcdf-c-4.7.4' '--with-hdf5=/cm/shared/apps/hdf5/1.10.1' 'CPPFLAGS=-DCDI_SIZE_TYPE=size_t' '--srcdir=.' --cache-file=/dev/null configure:34395: error: ./configure failed for libcdi ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict__ ac_cv_c_undeclared_builtin_options='none needed' ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_PYTHON_set= ac_cv_env_PYTHON_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_func_backtrace=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_have_decl_uuid_generate=yes ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_netcdf_meta_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_uuid_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_EGREP_TRADITIONAL='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_PYTHON=/usr/bin/python ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP=cpp ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/path/to/netcdf-c-4.7.4/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CPP=cpp ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_F77=gfortran ac_cv_prog_ac_ct_FILECMD=file ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c11= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_cxx11= ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_stdcxx= ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_H5dont_atexit='none required' ac_cv_search_H5get_libversion='none required' ac_cv_search_nc_open=-lnetcdf ac_cv_sys_largefile_opts='none needed' acx_cv_c_include_uuid_uuid_h= acx_cv_cf_flag='-DgFortran (probed)' acx_cv_cfortran_works=yes acx_cv_f77_cf_flag=-DgFortran acx_cv_have_libnc_dap=yes acx_cv_have_nc4hdf5=yes acx_cv_have_nc4szlib=no acx_cv_have_nczarr=no acx_cv_have_netcdf2=yes acx_cv_have_netcdf4=yes acx_cv_option_search_uuid_generate_c=' -luuid' am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_pathless_PYTHON=python am_cv_prog_cc_c_o=yes am_cv_python_platform=linux am_cv_python_pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages' am_cv_python_pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages' am_cv_python_version=3.6 ax_cv_PTHREAD_CLANG=no ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_PTHREAD_SPECIAL_FLAGS=no ax_cv_cxx_compile_cxx20=no ax_cv_cxx_compile_cxx20__std_gnupp20=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='/usr/bin/sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | /usr/bin/sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='/usr/bin/sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=3458764513820540925 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' autoconf' AUTOHEADER='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' autoheader' AUTOMAKE='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' automake-1.16' AWK='gawk' BASH='/bin/sh' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp -pthread -pthread' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='cpp' CPPFLAGS='-I/path/to/netcdf-c-4.7.4/include -I/path/to/netcdf-c-4.7.4/include -I/cm/shared/apps/hdf5/1.10.1/include -DgFortran -DCDI_SIZE_TYPE=size_t' CSCOPE='cscope' CTAGS='ctags' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++ -std=gnu++20' CXXCPP='g++ -E -std=gnu++20' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp -pthread' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ACROSS='yes' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_APP_FALSE='#' ENABLE_CDI_APP_TRUE='' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_EXTRA='yes' ENABLE_FORTRAN='true' ENABLE_GRIB='yes' ENABLE_GRIBAPI='no' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='#' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NC4SZLIB='no' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' ENABLE_THREADS='yes' ETAGS='etags' EXEEXT='' F77='gfortran' FDB5_INCLUDE='' FDB5_LIBS='' FFLAGS='-g -O2' FGREP='/usr/bin/grep -F' FILECMD='file' FORTRAN_WORKS='yes' GREP='/usr/bin/grep' HAVE_CXX20='1' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='#' HAVE_PYTHON_FALSE='#' HAVE_PYTHON_TRUE='' HDF5_INCLUDE=' -I/cm/shared/apps/hdf5/1.10.1/include' HDF5_LIBS=' -L/cm/shared/apps/hdf5/1.10.1/lib -lhdf5' HDF5_ROOT='/cm/shared/apps/hdf5/1.10.1' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/path/to/netcdf-c-4.7.4/lib -L/path/to/netcdf-c-4.7.4/lib -L/cm/shared/apps/hdf5/1.10.1/lib ' LIBOBJS='' LIBS='-lnetcdf -lpthread -lnetcdf -lhdf5_hl -lhdf5 -lpthread ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} '\''/path/to/me/cdo-2.4.2/config/missing'\'' makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='/path/to/netcdf-c-4.7.4/bin/nc-config' NETCDF_INCLUDE=' -I/path/to/netcdf-c-4.7.4/include' NETCDF_LIBS=' -L/path/to/netcdf-c-4.7.4/lib -lnetcdf' NETCDF_ROOT='/path/to/netcdf-c-4.7.4' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 2.4.2' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='2.4.2' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='-lpthread' PYTHON='/usr/bin/python' PYTHON_EXEC_PREFIX='${exec_prefix}' PYTHON_PLATFORM='linux' PYTHON_PREFIX='${prefix}' PYTHON_VERSION='3.6' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-pc-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='-luuid' UUID_C_INCLUDE='' UUID_C_LIB='-luuid' VERSION='2.4.2' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='gfortran' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /path/to/me/cdo-2.4.2/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='${pyexecdir}/cdo' pkgpythondir='${pythondir}/cdo' prefix='/path/to/cdo/2.4.2' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages' pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs_extra=' libcdi' sysconfdir='${prefix}/etc' target_alias='' configure: exit 1