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This file contains any messages produced by compilers while
|
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running configure, to aid debugging if configure makes a mistake.
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|
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It was created by cdo configure 1.9.10, which was
|
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generated by GNU Autoconf 2.69. Invocation command line was
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$ ./configure --with-cmor=/proj/nsc/users/weizhang/ticket/cmor/install/ --with-netcdf=/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb --with-hdf5=/proj/nsc/users/weizhang/ticket/hdf5/install --with-eccodes=/software/sse/manual/eccodes/2.10.0/nsc1-ENABLE-AEC-intel-2018a-eb --prefix=/proj/nsc/users/weizhang/ticket/cdo/install --with-udunits2=/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1 --with-jasper=/software/sse/easybuild/prefix/software/JasPer/2.0.14-GCCcore-6.4.0-nsc1
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## --------- ##
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## Platform. ##
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## --------- ##
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hostname = tetralith1.nsc.liu.se
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uname -m = x86_64
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uname -r = 3.10.0-1160.24.1.el7.x86_64
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uname -s = Linux
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uname -v = #1 SMP Thu Apr 8 19:51:47 UTC 2021
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/usr/bin/uname -p = x86_64
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/bin/uname -X = unknown
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/bin/arch = x86_64
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/usr/bin/arch -k = unknown
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/usr/convex/getsysinfo = unknown
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/usr/bin/hostinfo = unknown
|
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/bin/machine = unknown
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/usr/bin/oslevel = unknown
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/bin/universe = unknown
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|
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PATH: /software/sse/manual/nsc-eb-scripts/1.2/nsc-wrappers
|
|
PATH: /software/sse/manual/mpprun/4.1.3/nsc-wrappers
|
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PATH: /software/sse/manual/nsc-eb-scripts/1.2/bin
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PATH: /software/sse/manual/mpprun/4.1.3/bin
|
|
PATH: /software/sse/easybuild/prefix/software/JasPer/2.0.14-GCCcore-6.4.0-nsc1/bin
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PATH: /software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/bin
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PATH: /software/sse/easybuild/prefix/software/expat/2.2.5-GCCcore-6.4.0-nsc1/bin
|
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PATH: /software/sse/easybuild/prefix/software/imkl/2018.1.163-iimpi-2018a/mkl/bin
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PATH: /software/sse/easybuild/prefix/software/imkl/2018.1.163-iimpi-2018a/bin
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PATH: /software/sse/easybuild/prefix/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64
|
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PATH: /software/sse/easybuild/prefix/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64
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PATH: /software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64
|
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PATH: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin
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|
PATH: /software/sse/easybuild/prefix/software/GCCcore/6.4.0/bin
|
|
PATH: /software/sse/manual/easybuild/4.3.3-nscf4a9479/easybuild-framework
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|
PATH: /software/sse/manual/eccodes/2.10.0/nsc1-ENABLE-AEC-intel-2018a-eb/bin
|
|
PATH: /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin
|
|
PATH: /software/tools/bin
|
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PATH: /bin
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PATH: /usr/bin
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|
PATH: /opt/thinlinc/bin
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PATH: /usr/local/bin
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PATH: /usr/bin/X11
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|
PATH: /usr/local/sbin
|
|
PATH: /usr/sbin
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|
PATH: /proj/nsc/users/weizhang
|
|
PATH: /proj/nsc/users/weizhang/ownsoftware/cmake/cmake-3.15.0-rc1-Linux-x86_64/bin
|
|
PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/scalasca/bin
|
|
PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/scorep/bin
|
|
PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/cubegui/bin
|
|
PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/cubelib/bin
|
|
PATH: /home/weizhang/bin
|
|
|
|
|
|
## ----------- ##
|
|
## Core tests. ##
|
|
## ----------- ##
|
|
|
|
configure:2872: checking build system type
|
|
configure:2886: result: x86_64-pc-linux-gnu
|
|
configure:2906: checking host system type
|
|
configure:2919: result: x86_64-pc-linux-gnu
|
|
configure:2958: checking for a BSD-compatible install
|
|
configure:3026: result: /bin/install -c
|
|
configure:3037: checking whether build environment is sane
|
|
configure:3092: result: yes
|
|
configure:3238: checking for a thread-safe mkdir -p
|
|
configure:3277: result: /bin/mkdir -p
|
|
configure:3284: checking for gawk
|
|
configure:3300: found /bin/gawk
|
|
configure:3311: result: gawk
|
|
configure:3322: checking whether make sets $(MAKE)
|
|
configure:3344: result: yes
|
|
configure:3373: checking whether make supports nested variables
|
|
configure:3390: result: yes
|
|
configure:3520: checking whether to enable maintainer-specific portions of Makefiles
|
|
configure:3529: result: no
|
|
configure:3548: checking whether make supports the include directive
|
|
configure:3563: make -f confmf.GNU && cat confinc.out
|
|
this is the am__doit target
|
|
configure:3566: $? = 0
|
|
configure:3585: result: yes (GNU style)
|
|
configure:3655: checking for gcc
|
|
configure:3682: result: mpiicc
|
|
configure:3911: checking for C compiler version
|
|
configure:3920: mpiicc --version >&5
|
|
icc (ICC) 18.0.1 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:3931: $? = 0
|
|
configure:3920: mpiicc -v >&5
|
|
mpiicc for the Intel(R) MPI Library 2018 Update 1 for Linux*
|
|
Copyright(C) 2003-2017, Intel Corporation. All rights reserved.
|
|
icc version 18.0.1 (gcc version 6.4.0 compatibility)
|
|
configure:3931: $? = 0
|
|
configure:3920: mpiicc -V >&5
|
|
Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:3931: $? = 0
|
|
configure:3920: mpiicc -qversion >&5
|
|
icc: command line warning #10006: ignoring unknown option '-qversion'
|
|
/lib/../lib64/crt1.o: In function `_start':
|
|
(.text+0x20): undefined reference to `main'
|
|
configure:3931: $? = 1
|
|
configure:3951: checking whether the C compiler works
|
|
configure:3973: mpiicc -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:3977: $? = 0
|
|
configure:4025: result: yes
|
|
configure:4028: checking for C compiler default output file name
|
|
configure:4030: result: a.out
|
|
configure:4036: checking for suffix of executables
|
|
configure:4043: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:4047: $? = 0
|
|
configure:4069: result:
|
|
configure:4091: checking whether we are cross compiling
|
|
configure:4099: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:4103: $? = 0
|
|
configure:4110: ./conftest
|
|
configure:4114: $? = 0
|
|
configure:4129: result: no
|
|
configure:4134: checking for suffix of object files
|
|
configure:4156: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:4160: $? = 0
|
|
configure:4181: result: o
|
|
configure:4185: checking whether we are using the GNU C compiler
|
|
configure:4204: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:4204: $? = 0
|
|
configure:4213: result: yes
|
|
configure:4222: checking whether mpiicc accepts -g
|
|
configure:4242: mpiicc -c -g -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:4242: $? = 0
|
|
configure:4283: result: yes
|
|
configure:4300: checking for mpiicc option to accept ISO C89
|
|
configure:4363: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:4363: $? = 0
|
|
configure:4376: result: none needed
|
|
configure:4401: checking whether mpiicc understands -c and -o together
|
|
configure:4423: mpiicc -c conftest.c -o conftest2.o
|
|
configure:4426: $? = 0
|
|
configure:4423: mpiicc -c conftest.c -o conftest2.o
|
|
configure:4426: $? = 0
|
|
configure:4438: result: yes
|
|
configure:4457: checking dependency style of mpiicc
|
|
configure:4568: result: gcc3
|
|
configure:4633: checking for ar
|
|
configure:4649: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/ar
|
|
configure:4660: result: ar
|
|
configure:4686: checking the archiver (ar) interface
|
|
configure:4702: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:4702: $? = 0
|
|
configure:4704: ar cru libconftest.a conftest.o >&5
|
|
configure:4707: $? = 0
|
|
configure:4735: result: ar
|
|
configure:4756: setting up libtool
|
|
configure:4804: checking how to print strings
|
|
configure:4831: result: printf
|
|
configure:4852: checking for a sed that does not truncate output
|
|
configure:4916: result: /bin/sed
|
|
configure:4934: checking for grep that handles long lines and -e
|
|
configure:4992: result: /bin/grep
|
|
configure:4997: checking for egrep
|
|
configure:5059: result: /bin/grep -E
|
|
configure:5064: checking for fgrep
|
|
configure:5126: result: /bin/grep -F
|
|
configure:5161: checking for ld used by mpiicc
|
|
configure:5228: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld
|
|
configure:5235: checking if the linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld) is GNU ld
|
|
configure:5250: result: yes
|
|
configure:5262: checking for BSD- or MS-compatible name lister (nm)
|
|
configure:5316: result: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B
|
|
configure:5446: checking the name lister (/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B) interface
|
|
configure:5453: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:5456: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B "conftest.o"
|
|
configure:5459: output
|
|
0000000000000000 B some_variable
|
|
configure:5466: result: BSD nm
|
|
configure:5469: checking whether ln -s works
|
|
configure:5473: result: yes
|
|
configure:5481: checking the maximum length of command line arguments
|
|
configure:5612: result: 1572864
|
|
configure:5660: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
|
|
configure:5700: result: func_convert_file_noop
|
|
configure:5707: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
|
|
configure:5727: result: func_convert_file_noop
|
|
configure:5734: checking for /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld option to reload object files
|
|
configure:5741: result: -r
|
|
configure:5815: checking for objdump
|
|
configure:5831: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/objdump
|
|
configure:5842: result: objdump
|
|
configure:5874: checking how to recognize dependent libraries
|
|
configure:6074: result: pass_all
|
|
configure:6159: checking for dlltool
|
|
configure:6189: result: no
|
|
configure:6219: checking how to associate runtime and link libraries
|
|
configure:6246: result: printf %s\n
|
|
configure:6370: checking for archiver @FILE support
|
|
configure:6387: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:6387: $? = 0
|
|
configure:6390: ar cru libconftest.a @conftest.lst >&5
|
|
configure:6393: $? = 0
|
|
configure:6398: ar cru libconftest.a @conftest.lst >&5
|
|
ar: conftest.o: No such file or directory
|
|
configure:6401: $? = 1
|
|
configure:6413: result: @
|
|
configure:6471: checking for strip
|
|
configure:6487: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/strip
|
|
configure:6498: result: strip
|
|
configure:6570: checking for ranlib
|
|
configure:6586: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/ranlib
|
|
configure:6597: result: ranlib
|
|
configure:6699: checking command to parse /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B output from mpiicc object
|
|
configure:6852: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:6855: $? = 0
|
|
configure:6859: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
|
|
configure:6862: $? = 0
|
|
configure:6928: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c conftstm.o >&5
|
|
configure:6931: $? = 0
|
|
configure:6969: result: ok
|
|
configure:7016: checking for sysroot
|
|
configure:7046: result: no
|
|
configure:7053: checking for a working dd
|
|
configure:7091: result: /bin/dd
|
|
configure:7095: checking how to truncate binary pipes
|
|
configure:7110: result: /bin/dd bs=4096 count=1
|
|
configure:7246: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:7249: $? = 0
|
|
configure:7439: checking for mt
|
|
configure:7469: result: no
|
|
configure:7489: checking if : is a manifest tool
|
|
configure:7495: : '-?'
|
|
configure:7503: result: no
|
|
configure:8175: checking how to run the C preprocessor
|
|
configure:8206: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:8206: $? = 0
|
|
configure:8220: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h"
|
|
#include <ac_nonexistent.h>
|
|
^
|
|
|
|
configure:8220: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| /* end confdefs.h. */
|
|
| #include <ac_nonexistent.h>
|
|
configure:8245: result: mpiicc -E
|
|
configure:8265: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:8265: $? = 0
|
|
configure:8279: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h"
|
|
#include <ac_nonexistent.h>
|
|
^
|
|
|
|
configure:8279: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| /* end confdefs.h. */
|
|
| #include <ac_nonexistent.h>
|
|
configure:8308: checking for ANSI C header files
|
|
configure:8328: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8328: $? = 0
|
|
configure:8401: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:8401: $? = 0
|
|
configure:8401: ./conftest
|
|
configure:8401: $? = 0
|
|
configure:8412: result: yes
|
|
configure:8425: checking for sys/types.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for sys/stat.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for stdlib.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for string.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for memory.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for strings.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for inttypes.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for stdint.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8425: checking for unistd.h
|
|
configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8425: $? = 0
|
|
configure:8425: result: yes
|
|
configure:8439: checking for dlfcn.h
|
|
configure:8439: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:8439: $? = 0
|
|
configure:8439: result: yes
|
|
configure:8695: checking for objdir
|
|
configure:8710: result: .libs
|
|
configure:8974: checking if mpiicc supports -fno-rtti -fno-exceptions
|
|
configure:8992: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fno-rtti -fno-exceptions conftest.c >&5
|
|
configure:8996: $? = 0
|
|
configure:9009: result: yes
|
|
configure:9367: checking for mpiicc option to produce PIC
|
|
configure:9374: result: -fPIC -DPIC
|
|
configure:9382: checking if mpiicc PIC flag -fPIC -DPIC works
|
|
configure:9400: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fPIC -DPIC -DPIC conftest.c >&5
|
|
configure:9404: $? = 0
|
|
configure:9417: result: yes
|
|
configure:9446: checking if mpiicc static flag -static works
|
|
configure:9474: result: no
|
|
configure:9489: checking if mpiicc supports -c -o file.o
|
|
configure:9510: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -o out/conftest2.o conftest.c >&5
|
|
configure:9514: $? = 0
|
|
configure:9536: result: yes
|
|
configure:9544: checking if mpiicc supports -c -o file.o
|
|
configure:9591: result: yes
|
|
configure:9624: checking whether the mpiicc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries
|
|
configure:10883: result: yes
|
|
configure:10920: checking whether -lc should be explicitly linked in
|
|
configure:10928: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:10931: $? = 0
|
|
configure:10946: mpiicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
|
|
configure:10949: $? = 0
|
|
configure:10963: result: no
|
|
configure:11123: checking dynamic linker characteristics
|
|
configure:11704: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -Wl,-rpath -Wl,/foo conftest.c >&5
|
|
configure:11704: $? = 0
|
|
configure:11941: result: GNU/Linux ld.so
|
|
configure:12063: checking how to hardcode library paths into programs
|
|
configure:12088: result: immediate
|
|
configure:12636: checking whether stripping libraries is possible
|
|
configure:12641: result: yes
|
|
configure:12676: checking if libtool supports shared libraries
|
|
configure:12678: result: yes
|
|
configure:12681: checking whether to build shared libraries
|
|
configure:12706: result: yes
|
|
configure:12709: checking whether to build static libraries
|
|
configure:12713: result: yes
|
|
configure:12798: checking for bash
|
|
configure:12828: result: /bin/sh
|
|
configure:12895: checking for gcc
|
|
configure:12922: result: mpiicc
|
|
configure:12987: checking for g++
|
|
configure:13014: result: mpiicpc
|
|
configure:13036: checking for mpiicc option to accept ISO C99
|
|
configure:13185: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:13185: $? = 0
|
|
configure:13198: result: none needed
|
|
configure:13326: checking for C++ compiler version
|
|
configure:13335: mpiicpc --version >&5
|
|
icpc (ICC) 18.0.1 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:13346: $? = 0
|
|
configure:13335: mpiicpc -v >&5
|
|
mpiicpc for the Intel(R) MPI Library 2018 Update 1 for Linux*
|
|
Copyright(C) 2003-2017, Intel Corporation. All rights reserved.
|
|
icpc version 18.0.1 (gcc version 6.4.0 compatibility)
|
|
configure:13346: $? = 0
|
|
configure:13335: mpiicpc -V >&5
|
|
Intel(R) C++ Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:13346: $? = 0
|
|
configure:13335: mpiicpc -qversion >&5
|
|
icpc: command line warning #10006: ignoring unknown option '-qversion'
|
|
/lib/../lib64/crt1.o: In function `_start':
|
|
(.text+0x20): undefined reference to `main'
|
|
configure:13346: $? = 1
|
|
configure:13350: checking whether we are using the GNU C++ compiler
|
|
configure:13369: mpiicpc -c -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5
|
|
configure:13369: $? = 0
|
|
configure:13378: result: yes
|
|
configure:13387: checking whether mpiicpc accepts -g
|
|
configure:13407: mpiicpc -c -g -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5
|
|
configure:13407: $? = 0
|
|
configure:13448: result: yes
|
|
configure:13473: checking dependency style of mpiicpc
|
|
configure:13584: result: gcc3
|
|
configure:13617: checking how to run the C++ preprocessor
|
|
configure:13644: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp
|
|
configure:13644: $? = 0
|
|
configure:13658: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp
|
|
conftest.cpp(24): error #2379: cannot open source file "ac_nonexistent.h"
|
|
#include <ac_nonexistent.h>
|
|
^
|
|
|
|
configure:13658: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| /* end confdefs.h. */
|
|
| #include <ac_nonexistent.h>
|
|
configure:13683: result: mpiicpc -E
|
|
configure:13703: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp
|
|
configure:13703: $? = 0
|
|
configure:13717: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp
|
|
conftest.cpp(24): error #2379: cannot open source file "ac_nonexistent.h"
|
|
#include <ac_nonexistent.h>
|
|
^
|
|
|
|
configure:13717: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| /* end confdefs.h. */
|
|
| #include <ac_nonexistent.h>
|
|
configure:13879: checking for ld used by mpiicpc
|
|
configure:13946: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64
|
|
configure:13953: checking if the linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) is GNU ld
|
|
configure:13968: result: yes
|
|
configure:14023: checking whether the mpiicpc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries
|
|
configure:15096: result: yes
|
|
configure:15132: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5
|
|
configure:15135: $? = 0
|
|
configure:15616: checking for mpiicpc option to produce PIC
|
|
configure:15623: result: -fPIC -DPIC
|
|
configure:15631: checking if mpiicpc PIC flag -fPIC -DPIC works
|
|
configure:15649: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fPIC -DPIC -DPIC conftest.cpp >&5
|
|
configure:15653: $? = 0
|
|
configure:15666: result: yes
|
|
configure:15689: checking if mpiicpc static flag -static works
|
|
configure:15717: result: no
|
|
configure:15729: checking if mpiicpc supports -c -o file.o
|
|
configure:15750: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -o out/conftest2.o conftest.cpp >&5
|
|
configure:15754: $? = 0
|
|
configure:15776: result: yes
|
|
configure:15781: checking if mpiicpc supports -c -o file.o
|
|
configure:15828: result: yes
|
|
configure:15858: checking whether the mpiicpc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries
|
|
configure:15898: result: yes
|
|
configure:16039: checking dynamic linker characteristics
|
|
configure:16784: result: GNU/Linux ld.so
|
|
configure:16849: checking how to hardcode library paths into programs
|
|
configure:16874: result: immediate
|
|
configure:17020: checking for Fortran 77 compiler version
|
|
configure:17029: mpiifort --version >&5
|
|
ifort (IFORT) 18.0.1 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:17040: $? = 0
|
|
configure:17029: mpiifort -v >&5
|
|
mpiifort for the Intel(R) MPI Library 2018 Update 1 for Linux*
|
|
Copyright(C) 2003-2017, Intel Corporation. All rights reserved.
|
|
ifort version 18.0.1
|
|
configure:17040: $? = 0
|
|
configure:17029: mpiifort -V >&5
|
|
Intel(R) Fortran Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018
|
|
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
|
|
|
|
configure:17040: $? = 0
|
|
configure:17029: mpiifort -qversion >&5
|
|
ifort: command line warning #10006: ignoring unknown option '-qversion'
|
|
/software/sse/easybuild/prefix/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64_lin/for_main.o: In function `main':
|
|
for_main.c:(.text+0x2a): undefined reference to `MAIN__'
|
|
configure:17040: $? = 1
|
|
configure:17049: checking whether we are using the GNU Fortran 77 compiler
|
|
configure:17062: mpiifort -c -O2 conftest.F >&5
|
|
conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: => = . [ % ( :
|
|
choke me
|
|
---------------^
|
|
compilation aborted for conftest.F (code 1)
|
|
configure:17062: $? = 1
|
|
configure: failed program was:
|
|
| program main
|
|
| #ifndef __GNUC__
|
|
| choke me
|
|
| #endif
|
|
|
|
|
| end
|
|
configure:17071: result: no
|
|
configure:17077: checking whether mpiifort accepts -g
|
|
configure:17088: mpiifort -c -g conftest.f >&5
|
|
configure:17088: $? = 0
|
|
configure:17096: result: yes
|
|
configure:17225: checking if libtool supports shared libraries
|
|
configure:17227: result: yes
|
|
configure:17230: checking whether to build shared libraries
|
|
configure:17254: result: yes
|
|
configure:17257: checking whether to build static libraries
|
|
configure:17261: result: yes
|
|
configure:17613: checking for mpiifort option to produce PIC
|
|
configure:17620: result: -fPIC
|
|
configure:17628: checking if mpiifort PIC flag -fPIC works
|
|
configure:17646: mpiifort -c -O2 -fPIC conftest.f >&5
|
|
configure:17650: $? = 0
|
|
configure:17663: result: yes
|
|
configure:17686: checking if mpiifort static flag -static works
|
|
configure:17714: result: no
|
|
configure:17726: checking if mpiifort supports -c -o file.o
|
|
configure:17747: mpiifort -c -O2 -o out/conftest2.o conftest.f >&5
|
|
configure:17751: $? = 0
|
|
configure:17773: result: yes
|
|
configure:17778: checking if mpiifort supports -c -o file.o
|
|
configure:17825: result: yes
|
|
configure:17855: checking whether the mpiifort linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries
|
|
configure:19064: result: yes
|
|
configure:19205: checking dynamic linker characteristics
|
|
configure:19944: result: GNU/Linux ld.so
|
|
configure:20009: checking how to hardcode library paths into programs
|
|
configure:20034: result: immediate
|
|
configure:20067: checking for C/C++ restrict keyword
|
|
configure:20092: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:20092: $? = 0
|
|
configure:20100: result: __restrict
|
|
configure:20120: checking whether mpiicpc supports C++11 features by default
|
|
configure:20414: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5
|
|
configure:20414: $? = 0
|
|
configure:20421: result: yes
|
|
configure:21106: checking for mpiicc option to support OpenMP
|
|
configure:21121: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
conftest.c(28): error: identifier "choke" is undefined
|
|
choke me
|
|
^
|
|
|
|
In file included from conftest.c(30):
|
|
/software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(55): error: expected a ";"
|
|
typedef enum omp_sched_t {
|
|
^
|
|
|
|
In file included from conftest.c(30):
|
|
/software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(67): error: expected an identifier
|
|
extern void __KAI_KMPC_CONVENTION omp_set_schedule (omp_sched_t, int);
|
|
^
|
|
|
|
In file included from conftest.c(30):
|
|
/software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(84): error: identifier "omp_sched_t" is undefined
|
|
extern void __KAI_KMPC_CONVENTION omp_get_schedule (omp_sched_t *, int *);
|
|
^
|
|
|
|
compilation aborted for conftest.c (code 2)
|
|
configure:21121: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| #ifndef _OPENMP
|
|
| choke me
|
|
| #endif
|
|
| #include <omp.h>
|
|
| int main () { return omp_get_num_threads (); }
|
|
|
|
|
configure:21139: mpiicc -o conftest -O2 -fopenmp -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:21139: $? = 0
|
|
configure:21153: result: -fopenmp
|
|
configure:21207: checking for ar
|
|
configure:21234: result: ar
|
|
configure:21391: checking for ld
|
|
configure:21418: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64
|
|
configure:21483: checking for nm
|
|
configure:21510: result: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B
|
|
configure:21575: checking for ar
|
|
configure:21602: result: ar
|
|
configure:21667: checking for as
|
|
configure:21683: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/as
|
|
configure:21694: result: as
|
|
configure:21759: checking for dlltool
|
|
configure:21786: result: false
|
|
configure:21851: checking for objdump
|
|
configure:21878: result: objdump
|
|
configure:21943: checking for strip
|
|
configure:21970: result: strip
|
|
configure:22035: checking for ranlib
|
|
configure:22062: result: ranlib
|
|
configure:22098: checking for special C compiler options needed for large files
|
|
configure:22143: result: no
|
|
configure:22149: checking for _FILE_OFFSET_BITS value needed for large files
|
|
configure:22174: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22174: $? = 0
|
|
configure:22206: result: no
|
|
configure:22299: checking for stdlib.h
|
|
configure:22299: result: yes
|
|
configure:22299: checking for unistd.h
|
|
configure:22299: result: yes
|
|
configure:22299: checking for sys/param.h
|
|
configure:22299: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22299: $? = 0
|
|
configure:22299: result: yes
|
|
configure:22319: checking for getpagesize
|
|
configure:22319: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22319: $? = 0
|
|
configure:22319: result: yes
|
|
configure:22328: checking for working mmap
|
|
configure:22475: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22475: $? = 0
|
|
configure:22475: ./conftest
|
|
configure:22475: $? = 0
|
|
configure:22485: result: yes
|
|
configure:22496: checking for struct stat.st_blksize
|
|
configure:22496: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22496: $? = 0
|
|
configure:22496: result: yes
|
|
configure:22510: checking sys/resource.h usability
|
|
configure:22510: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22510: $? = 0
|
|
configure:22510: result: yes
|
|
configure:22510: checking sys/resource.h presence
|
|
configure:22510: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22510: $? = 0
|
|
configure:22510: result: yes
|
|
configure:22510: checking for sys/resource.h
|
|
configure:22510: result: yes
|
|
configure:22522: checking sys/times.h usability
|
|
configure:22522: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22522: $? = 0
|
|
configure:22522: result: yes
|
|
configure:22522: checking sys/times.h presence
|
|
configure:22522: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22522: $? = 0
|
|
configure:22522: result: yes
|
|
configure:22522: checking for sys/times.h
|
|
configure:22522: result: yes
|
|
configure:22534: checking malloc.h usability
|
|
configure:22534: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22534: $? = 0
|
|
configure:22534: result: yes
|
|
configure:22534: checking malloc.h presence
|
|
configure:22534: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22534: $? = 0
|
|
configure:22534: result: yes
|
|
configure:22534: checking for malloc.h
|
|
configure:22534: result: yes
|
|
configure:22546: checking glob.h usability
|
|
configure:22546: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22546: $? = 0
|
|
configure:22546: result: yes
|
|
configure:22546: checking glob.h presence
|
|
configure:22546: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22546: $? = 0
|
|
configure:22546: result: yes
|
|
configure:22546: checking for glob.h
|
|
configure:22546: result: yes
|
|
configure:22558: checking fnmatch.h usability
|
|
configure:22558: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22558: $? = 0
|
|
configure:22558: result: yes
|
|
configure:22558: checking fnmatch.h presence
|
|
configure:22558: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22558: $? = 0
|
|
configure:22558: result: yes
|
|
configure:22558: checking for fnmatch.h
|
|
configure:22558: result: yes
|
|
configure:22570: checking wordexp.h usability
|
|
configure:22570: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22570: $? = 0
|
|
configure:22570: result: yes
|
|
configure:22570: checking wordexp.h presence
|
|
configure:22570: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22570: $? = 0
|
|
configure:22570: result: yes
|
|
configure:22570: checking for wordexp.h
|
|
configure:22570: result: yes
|
|
configure:22582: checking execinfo.h usability
|
|
configure:22582: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22582: $? = 0
|
|
configure:22582: result: yes
|
|
configure:22582: checking execinfo.h presence
|
|
configure:22582: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c
|
|
configure:22582: $? = 0
|
|
configure:22582: result: yes
|
|
configure:22582: checking for execinfo.h
|
|
configure:22582: result: yes
|
|
configure:22596: checking for mallinfo
|
|
configure:22596: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22596: $? = 0
|
|
configure:22596: result: yes
|
|
configure:22607: checking for backtrace
|
|
configure:22607: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22607: $? = 0
|
|
configure:22607: result: yes
|
|
configure:22620: checking for getrlimit
|
|
configure:22620: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22620: $? = 0
|
|
configure:22620: result: yes
|
|
configure:22697: checking for feenableexcept
|
|
configure:22697: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5
|
|
configure:22697: $? = 0
|
|
configure:22697: result: yes
|
|
configure:22707: checking for fenv_t.__control
|
|
configure:22707: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
conftest.c(53): error: struct "<unnamed>" has no field "__control"
|
|
if (ac_aggr.__control)
|
|
^
|
|
|
|
compilation aborted for conftest.c (code 2)
|
|
configure:22707: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| /* end confdefs.h. */
|
|
| #include <fenv.h>
|
|
|
|
|
| int
|
|
| main ()
|
|
| {
|
|
| static fenv_t ac_aggr;
|
|
| if (ac_aggr.__control)
|
|
| return 0;
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:22707: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
conftest.c(53): error: struct "<unnamed>" has no field "__control"
|
|
if (sizeof ac_aggr.__control)
|
|
^
|
|
|
|
compilation aborted for conftest.c (code 2)
|
|
configure:22707: $? = 2
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| /* end confdefs.h. */
|
|
| #include <fenv.h>
|
|
|
|
|
| int
|
|
| main ()
|
|
| {
|
|
| static fenv_t ac_aggr;
|
|
| if (sizeof ac_aggr.__control)
|
|
| return 0;
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:22707: result: no
|
|
configure:22717: checking for fenv_t.__mxcsr
|
|
configure:22717: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5
|
|
configure:22717: $? = 0
|
|
configure:22717: result: yes
|
|
configure:22740: checking C preprocessor flags for Fortran calling convention cfortran.h
|
|
configure:22826: result: -DgFortran (probed)
|
|
configure:22861: checking if C externals constructed with cfortran.h work
|
|
configure:22921: mpiicc -c -O2 -I./src -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5
|
|
configure:22921: $? = 0
|
|
configure:22922: Renaming C object file.
|
|
configure:22925: $? = 0
|
|
configure:22943: mpiifort -c -O2 conftest.f >&5
|
|
configure:22943: $? = 0
|
|
configure:22944: Renaming Fortran object file.
|
|
configure:22947: $? = 0
|
|
configure:23003: mpiifort -o conftest -O2 -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.f conftest_c.o conftest_f.o >&5
|
|
configure:23003: $? = 0
|
|
configure:23003: ./conftest
|
|
configure:23003: $? = 0
|
|
configure:23037: result: yes
|
|
configure:23276: checking whether mpiicc is Clang
|
|
configure:23301: result: no
|
|
configure:23363: checking whether pthreads work with "-pthread" and "-lpthread"
|
|
configure:23468: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5
|
|
configure:23468: $? = 0
|
|
configure:23477: result: yes
|
|
configure:23594: checking for joinable pthread attribute
|
|
configure:23612: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5
|
|
configure:23612: $? = 0
|
|
configure:23620: result: PTHREAD_CREATE_JOINABLE
|
|
configure:23634: checking whether more special flags are required for pthreads
|
|
configure:23647: result: no
|
|
configure:23655: checking for PTHREAD_PRIO_INHERIT
|
|
configure:23672: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5
|
|
configure:23672: $? = 0
|
|
configure:23681: result: yes
|
|
configure:24033: checking for szlib library
|
|
configure:24035: result: suppressed
|
|
configure:24201: checking hdf5.h usability
|
|
configure:24201: mpiicc -c -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5
|
|
configure:24201: $? = 0
|
|
configure:24201: result: yes
|
|
configure:24201: checking hdf5.h presence
|
|
configure:24201: mpiicc -E -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c
|
|
configure:24201: $? = 0
|
|
configure:24201: result: yes
|
|
configure:24201: checking for hdf5.h
|
|
configure:24201: result: yes
|
|
configure:24211: checking for library containing H5Fopen
|
|
configure:24242: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5
|
|
/tmp/iccfGZRMZ.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `H5Fopen'
|
|
configure:24242: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char H5Fopen ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return H5Fopen ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:24242: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5 -lpthread >&5
|
|
configure:24242: $? = 0
|
|
configure:24259: result: -lhdf5
|
|
configure:24271: checking for library containing H5DSis_scale
|
|
configure:24302: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5 -lpthread >&5
|
|
/tmp/icceDFaWE.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `H5DSis_scale'
|
|
configure:24302: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char H5DSis_scale ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return H5DSis_scale ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:24302: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5_hl -lhdf5 -lpthread >&5
|
|
configure:24302: $? = 0
|
|
configure:24319: result: -lhdf5_hl
|
|
configure:24546: checking netcdf.h usability
|
|
configure:24546: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5
|
|
configure:24546: $? = 0
|
|
configure:24546: result: yes
|
|
configure:24546: checking netcdf.h presence
|
|
configure:24546: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c
|
|
configure:24546: $? = 0
|
|
configure:24546: result: yes
|
|
configure:24546: checking for netcdf.h
|
|
configure:24546: result: yes
|
|
configure:24556: checking for library containing nc_open
|
|
configure:24587: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5_hl -lhdf5 -lpthread >&5
|
|
/tmp/iccPYC09a.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `nc_open'
|
|
configure:24587: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| #define HAVE_NETCDF_H 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char nc_open ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return nc_open ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:24587: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
configure:24587: $? = 0
|
|
configure:24604: result: -lnetcdf
|
|
configure:24619: checking nc-config script
|
|
configure:24623: checking for nc-config
|
|
configure:24639: found /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config
|
|
configure:24650: result: /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config
|
|
configure:24659: checking netcdf's OpenDAP support
|
|
configure:24665: result: yes
|
|
configure:24671: checking netcdf's nc2 support
|
|
configure:24678: result: yes
|
|
configure:24684: checking netcdf's nc4 support
|
|
configure:24691: result: yes
|
|
configure:24697: checking netcdf's nc4/hdf5 support
|
|
configure:24704: result: yes
|
|
configure:24730: checking for library containing H5TS_mutex_lock
|
|
configure:24761: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
configure:24761: $? = 0
|
|
configure:24778: result: none required
|
|
configure:24892: checking udunits2.h usability
|
|
configure:24892: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5
|
|
configure:24892: $? = 0
|
|
configure:24892: result: yes
|
|
configure:24892: checking udunits2.h presence
|
|
configure:24892: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c
|
|
configure:24892: $? = 0
|
|
configure:24892: result: yes
|
|
configure:24892: checking for udunits2.h
|
|
configure:24892: result: yes
|
|
configure:24904: checking udunits2/udunits2.h usability
|
|
configure:24904: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5
|
|
configure:24904: $? = 0
|
|
configure:24904: result: yes
|
|
configure:24904: checking udunits2/udunits2.h presence
|
|
configure:24904: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c
|
|
configure:24904: $? = 0
|
|
configure:24904: result: yes
|
|
configure:24904: checking for udunits2/udunits2.h
|
|
configure:24904: result: yes
|
|
configure:24914: checking for library containing ut_parse
|
|
configure:24945: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
/tmp/iccqRVyb4.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `ut_parse'
|
|
configure:24945: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| #define HAVE_NETCDF_H 1
|
|
| #define HAVE_LIBNETCDF 1
|
|
| #define HAVE_LIBNC_DAP 1
|
|
| #define HAVE_NETCDF2 1
|
|
| #define HAVE_NETCDF4 1
|
|
| #define HAVE_NC4HDF5 1
|
|
| #define HAVE_NC4HDF5_THREADSAFE 1
|
|
| #define HAVE_UDUNITS2_H 1
|
|
| #define HAVE_UDUNITS2_UDUNITS2_H 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char ut_parse ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return ut_parse ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:24945: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
configure:24945: $? = 0
|
|
configure:24962: result: -ludunits2
|
|
configure:25133: checking for uuid/uuid.h extra include path
|
|
configure:25153: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5
|
|
configure:25153: $? = 0
|
|
configure:25180: result: (none required)
|
|
configure:25208: checking for library containing uuid_generate
|
|
configure:25241: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
/tmp/icciBs0ax.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `uuid_generate'
|
|
configure:25241: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| #define HAVE_NETCDF_H 1
|
|
| #define HAVE_LIBNETCDF 1
|
|
| #define HAVE_LIBNC_DAP 1
|
|
| #define HAVE_NETCDF2 1
|
|
| #define HAVE_NETCDF4 1
|
|
| #define HAVE_NC4HDF5 1
|
|
| #define HAVE_NC4HDF5_THREADSAFE 1
|
|
| #define HAVE_UDUNITS2_H 1
|
|
| #define HAVE_UDUNITS2_UDUNITS2_H 1
|
|
| #define HAVE_LIBUDUNITS2 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char uuid_generate ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return uuid_generate ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:25241: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -luuid -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
configure:25241: $? = 0
|
|
configure:25269: result: -luuid
|
|
configure:25305: checking for uuid/uuid.h
|
|
configure:25305: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5
|
|
configure:25305: $? = 0
|
|
configure:25305: result: yes
|
|
configure:25311: checking whether uuid_generate is declared
|
|
configure:25311: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5
|
|
configure:25311: $? = 0
|
|
configure:25311: result: yes
|
|
configure:25967: checking for library containing cmor_load_table
|
|
configure:25998: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
/tmp/icc868xez.o: In function `main':
|
|
conftest.c:(.text+0x3a): undefined reference to `cmor_load_table'
|
|
configure:25998: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| #define HAVE_NETCDF_H 1
|
|
| #define HAVE_LIBNETCDF 1
|
|
| #define HAVE_LIBNC_DAP 1
|
|
| #define HAVE_NETCDF2 1
|
|
| #define HAVE_NETCDF4 1
|
|
| #define HAVE_NC4HDF5 1
|
|
| #define HAVE_NC4HDF5_THREADSAFE 1
|
|
| #define HAVE_UDUNITS2_H 1
|
|
| #define HAVE_UDUNITS2_UDUNITS2_H 1
|
|
| #define HAVE_LIBUDUNITS2 1
|
|
| #define HAVE_UUID_UUID_H 1
|
|
| #define HAVE_DECL_UUID_GENERATE 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char cmor_load_table ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return cmor_load_table ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:25998: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib conftest.c -lcmor -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid >&5
|
|
ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100
|
|
ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103
|
|
/proj/nsc/users/weizhang/ticket/hdf5/install/lib/libcmor.a(cmor.o): In function `cmor_generate_uuid':
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export'
|
|
/proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy'
|
|
configure:25998: $? = 1
|
|
configure: failed program was:
|
|
| /* confdefs.h */
|
|
| #define PACKAGE_NAME "cdo"
|
|
| #define PACKAGE_TARNAME "cdo"
|
|
| #define PACKAGE_VERSION "1.9.10"
|
|
| #define PACKAGE_STRING "cdo 1.9.10"
|
|
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
| #define PACKAGE_URL ""
|
|
| #define CDO "1.9.10"
|
|
| #define PACKAGE "cdo"
|
|
| #define VERSION "1.9.10"
|
|
| #define STDC_HEADERS 1
|
|
| #define HAVE_SYS_TYPES_H 1
|
|
| #define HAVE_SYS_STAT_H 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_STRING_H 1
|
|
| #define HAVE_MEMORY_H 1
|
|
| #define HAVE_STRINGS_H 1
|
|
| #define HAVE_INTTYPES_H 1
|
|
| #define HAVE_STDINT_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_DLFCN_H 1
|
|
| #define LT_OBJDIR ".libs/"
|
|
| #define restrict __restrict
|
|
| #define HAVE_CXX11 1
|
|
| #define HAVE_STDLIB_H 1
|
|
| #define HAVE_UNISTD_H 1
|
|
| #define HAVE_SYS_PARAM_H 1
|
|
| #define HAVE_GETPAGESIZE 1
|
|
| #define HAVE_MMAP 1
|
|
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
| #define HAVE_SYS_RESOURCE_H 1
|
|
| #define HAVE_SYS_TIMES_H 1
|
|
| #define HAVE_MALLOC_H 1
|
|
| #define HAVE_GLOB_H 1
|
|
| #define HAVE_FNMATCH_H 1
|
|
| #define HAVE_WORDEXP_H 1
|
|
| #define HAVE_EXECINFO_H 1
|
|
| #define HAVE_MALLINFO 1
|
|
| #define HAVE_BACKTRACE 1
|
|
| #define HAVE_GETRLIMIT 1
|
|
| #define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
| #define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
| #define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
| #define HAVE_FEENABLEEXCEPT 1
|
|
| #define HAVE_FENV_T___MXCSR 1
|
|
| #define HAVE_CF_INTERFACE 1
|
|
| #define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
| #define HAVE_LIBPTHREAD 1
|
|
| #define HAVE_HDF5_H 1
|
|
| #define HAVE_LIBHDF5 1
|
|
| #define HAVE_NETCDF_H 1
|
|
| #define HAVE_LIBNETCDF 1
|
|
| #define HAVE_LIBNC_DAP 1
|
|
| #define HAVE_NETCDF2 1
|
|
| #define HAVE_NETCDF4 1
|
|
| #define HAVE_NC4HDF5 1
|
|
| #define HAVE_NC4HDF5_THREADSAFE 1
|
|
| #define HAVE_UDUNITS2_H 1
|
|
| #define HAVE_UDUNITS2_UDUNITS2_H 1
|
|
| #define HAVE_LIBUDUNITS2 1
|
|
| #define HAVE_UUID_UUID_H 1
|
|
| #define HAVE_DECL_UUID_GENERATE 1
|
|
| /* end confdefs.h. */
|
|
|
|
|
| /* Override any GCC internal prototype to avoid an error.
|
|
| Use char because int might match the return type of a GCC
|
|
| builtin and then its argument prototype would still apply. */
|
|
| #ifdef __cplusplus
|
|
| extern "C"
|
|
| #endif
|
|
| char cmor_load_table ();
|
|
| int
|
|
| main ()
|
|
| {
|
|
| return cmor_load_table ();
|
|
| ;
|
|
| return 0;
|
|
| }
|
|
configure:26015: result: no
|
|
configure:26024: error: Could not link to cmor library!
|
|
|
|
## ---------------- ##
|
|
## Cache variables. ##
|
|
## ---------------- ##
|
|
|
|
ac_cv_build=x86_64-pc-linux-gnu
|
|
ac_cv_c_compiler_gnu=yes
|
|
ac_cv_c_restrict=__restrict
|
|
ac_cv_cxx_compiler_gnu=yes
|
|
ac_cv_env_CCC_set=
|
|
ac_cv_env_CCC_value=
|
|
ac_cv_env_CC_set=set
|
|
ac_cv_env_CC_value=mpiicc
|
|
ac_cv_env_CFLAGS_set=set
|
|
ac_cv_env_CFLAGS_value=-O2
|
|
ac_cv_env_CPPFLAGS_set=set
|
|
ac_cv_env_CPPFLAGS_value='-I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c'
|
|
ac_cv_env_CPP_set=
|
|
ac_cv_env_CPP_value=
|
|
ac_cv_env_CXXCPP_set=
|
|
ac_cv_env_CXXCPP_value=
|
|
ac_cv_env_CXXFLAGS_set=
|
|
ac_cv_env_CXXFLAGS_value=
|
|
ac_cv_env_CXX_set=set
|
|
ac_cv_env_CXX_value=mpiicpc
|
|
ac_cv_env_DCE_UUID_C_INCLUDE_set=
|
|
ac_cv_env_DCE_UUID_C_INCLUDE_value=
|
|
ac_cv_env_DCE_UUID_C_LIB_set=
|
|
ac_cv_env_DCE_UUID_C_LIB_value=
|
|
ac_cv_env_F77_set=set
|
|
ac_cv_env_F77_value=mpiifort
|
|
ac_cv_env_FFLAGS_set=set
|
|
ac_cv_env_FFLAGS_value=-O2
|
|
ac_cv_env_LDFLAGS_set=set
|
|
ac_cv_env_LDFLAGS_value='-L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor'
|
|
ac_cv_env_LIBS_set=
|
|
ac_cv_env_LIBS_value=
|
|
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
|
|
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
|
|
ac_cv_env_OSSP_UUID_C_INCLUDE_set=
|
|
ac_cv_env_OSSP_UUID_C_INCLUDE_value=
|
|
ac_cv_env_OSSP_UUID_C_LIB_set=
|
|
ac_cv_env_OSSP_UUID_C_LIB_value=
|
|
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set=
|
|
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value=
|
|
ac_cv_env_UTIL_LINUX_UUID_C_LIB_set=
|
|
ac_cv_env_UTIL_LINUX_UUID_C_LIB_value=
|
|
ac_cv_env_build_alias_set=
|
|
ac_cv_env_build_alias_value=
|
|
ac_cv_env_host_alias_set=
|
|
ac_cv_env_host_alias_value=
|
|
ac_cv_env_target_alias_set=
|
|
ac_cv_env_target_alias_value=
|
|
ac_cv_f77_compiler_gnu=no
|
|
ac_cv_func_backtrace=yes
|
|
ac_cv_func_feenableexcept=yes
|
|
ac_cv_func_getpagesize=yes
|
|
ac_cv_func_getrlimit=yes
|
|
ac_cv_func_mallinfo=yes
|
|
ac_cv_func_mmap_fixed_mapped=yes
|
|
ac_cv_have_decl_uuid_generate=yes
|
|
ac_cv_header_dlfcn_h=yes
|
|
ac_cv_header_execinfo_h=yes
|
|
ac_cv_header_fnmatch_h=yes
|
|
ac_cv_header_glob_h=yes
|
|
ac_cv_header_hdf5_h=yes
|
|
ac_cv_header_inttypes_h=yes
|
|
ac_cv_header_malloc_h=yes
|
|
ac_cv_header_memory_h=yes
|
|
ac_cv_header_netcdf_h=yes
|
|
ac_cv_header_stdc=yes
|
|
ac_cv_header_stdint_h=yes
|
|
ac_cv_header_stdlib_h=yes
|
|
ac_cv_header_string_h=yes
|
|
ac_cv_header_strings_h=yes
|
|
ac_cv_header_sys_param_h=yes
|
|
ac_cv_header_sys_resource_h=yes
|
|
ac_cv_header_sys_stat_h=yes
|
|
ac_cv_header_sys_times_h=yes
|
|
ac_cv_header_sys_types_h=yes
|
|
ac_cv_header_udunits2_h=yes
|
|
ac_cv_header_udunits2_udunits2_h=yes
|
|
ac_cv_header_unistd_h=yes
|
|
ac_cv_header_uuid_uuid_h=yes
|
|
ac_cv_header_wordexp_h=yes
|
|
ac_cv_host=x86_64-pc-linux-gnu
|
|
ac_cv_member_fenv_t___control=no
|
|
ac_cv_member_fenv_t___mxcsr=yes
|
|
ac_cv_member_struct_stat_st_blksize=yes
|
|
ac_cv_objext=o
|
|
ac_cv_path_EGREP='/bin/grep -E'
|
|
ac_cv_path_FGREP='/bin/grep -F'
|
|
ac_cv_path_GREP=/bin/grep
|
|
ac_cv_path_SED=/bin/sed
|
|
ac_cv_path_ac_pt_BASH=/bin/sh
|
|
ac_cv_path_install='/bin/install -c'
|
|
ac_cv_path_lt_DD=/bin/dd
|
|
ac_cv_path_mkdir=/bin/mkdir
|
|
ac_cv_prog_AWK=gawk
|
|
ac_cv_prog_CPP='mpiicc -E'
|
|
ac_cv_prog_CXXCPP='mpiicpc -E'
|
|
ac_cv_prog_NC_CONFIG=/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config
|
|
ac_cv_prog_ac_ct_AR=ar
|
|
ac_cv_prog_ac_ct_AS=as
|
|
ac_cv_prog_ac_ct_CC=mpiicc
|
|
ac_cv_prog_ac_ct_CXX=mpiicpc
|
|
ac_cv_prog_ac_ct_DLLTOOL=false
|
|
ac_cv_prog_ac_ct_LD='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64'
|
|
ac_cv_prog_ac_ct_NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B'
|
|
ac_cv_prog_ac_ct_OBJDUMP=objdump
|
|
ac_cv_prog_ac_ct_RANLIB=ranlib
|
|
ac_cv_prog_ac_ct_STRIP=strip
|
|
ac_cv_prog_c_openmp=-fopenmp
|
|
ac_cv_prog_cc_c89=
|
|
ac_cv_prog_cc_c99=
|
|
ac_cv_prog_cc_g=yes
|
|
ac_cv_prog_cxx_g=yes
|
|
ac_cv_prog_f77_g=yes
|
|
ac_cv_prog_make_make_set=yes
|
|
ac_cv_search_H5DSis_scale=-lhdf5_hl
|
|
ac_cv_search_H5Fopen=-lhdf5
|
|
ac_cv_search_H5TS_mutex_lock='none required'
|
|
ac_cv_search_cmor_load_table=no
|
|
ac_cv_search_nc_open=-lnetcdf
|
|
ac_cv_search_ut_parse=-ludunits2
|
|
ac_cv_sys_file_offset_bits=no
|
|
ac_cv_sys_largefile_CC=no
|
|
acx_cv_c_include_uuid_uuid_h=
|
|
acx_cv_cf_flag='-DgFortran (probed)'
|
|
acx_cv_cfortran_works=yes
|
|
acx_cv_f77_cf_flag=-DgFortran
|
|
acx_cv_option_search_uuid_generate_c=' -luuid '
|
|
am_cv_CC_dependencies_compiler_type=gcc3
|
|
am_cv_CXX_dependencies_compiler_type=gcc3
|
|
am_cv_ar_interface=ar
|
|
am_cv_make_support_nested_variables=yes
|
|
am_cv_prog_cc_c_o=yes
|
|
ax_cv_PTHREAD_CLANG=no
|
|
ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE
|
|
ax_cv_PTHREAD_PRIO_INHERIT=yes
|
|
ax_cv_PTHREAD_SPECIAL_FLAGS=no
|
|
ax_cv_cxx_compile_cxx11=yes
|
|
lt_cv_ar_at_file=@
|
|
lt_cv_archive_cmds_need_lc=no
|
|
lt_cv_deplibs_check_method=pass_all
|
|
lt_cv_file_magic_cmd='$MAGIC_CMD'
|
|
lt_cv_file_magic_test_file=
|
|
lt_cv_ld_reload_flag=-r
|
|
lt_cv_nm_interface='BSD nm'
|
|
lt_cv_objdir=.libs
|
|
lt_cv_path_LD=/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld
|
|
lt_cv_path_LDCXX='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64'
|
|
lt_cv_path_NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B'
|
|
lt_cv_path_mainfest_tool=no
|
|
lt_cv_prog_compiler_c_o=yes
|
|
lt_cv_prog_compiler_c_o_CXX=yes
|
|
lt_cv_prog_compiler_c_o_F77=yes
|
|
lt_cv_prog_compiler_pic='-fPIC -DPIC'
|
|
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
|
|
lt_cv_prog_compiler_pic_F77=-fPIC
|
|
lt_cv_prog_compiler_pic_works=yes
|
|
lt_cv_prog_compiler_pic_works_CXX=yes
|
|
lt_cv_prog_compiler_pic_works_F77=yes
|
|
lt_cv_prog_compiler_rtti_exceptions=yes
|
|
lt_cv_prog_compiler_static_works=no
|
|
lt_cv_prog_compiler_static_works_CXX=no
|
|
lt_cv_prog_compiler_static_works_F77=no
|
|
lt_cv_prog_gnu_ld=yes
|
|
lt_cv_prog_gnu_ldcxx=yes
|
|
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
|
|
lt_cv_shlibpath_overrides_runpath=no
|
|
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
|
|
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
|
|
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
|
|
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
|
|
lt_cv_sys_global_symbol_to_import=
|
|
lt_cv_sys_max_cmd_len=1572864
|
|
lt_cv_to_host_file_cmd=func_convert_file_noop
|
|
lt_cv_to_tool_file_cmd=func_convert_file_noop
|
|
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'
|
|
|
|
## ----------------- ##
|
|
## Output variables. ##
|
|
## ----------------- ##
|
|
|
|
ACLOCAL='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' aclocal-1.16'
|
|
AMDEPBACKSLASH='\'
|
|
AMDEP_FALSE='#'
|
|
AMDEP_TRUE=''
|
|
AMTAR='$${TAR-tar}'
|
|
AM_BACKSLASH='\'
|
|
AM_CPPFLAGS=''
|
|
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
|
|
AM_DEFAULT_VERBOSITY='1'
|
|
AM_V='$(V)'
|
|
AR='ar'
|
|
AS='as'
|
|
AUTOCONF='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' autoconf'
|
|
AUTOHEADER='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' autoheader'
|
|
AUTOMAKE='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' automake-1.16'
|
|
AWK='gawk'
|
|
BASH='/bin/sh'
|
|
CC='mpiicc'
|
|
CCDEPMODE='depmode=gcc3'
|
|
CFLAGS='-O2 -fopenmp -pthread'
|
|
CLDFLAGS=''
|
|
CLIBS=''
|
|
CMOR_LIBS=''
|
|
CPP='mpiicc -E'
|
|
CPPFLAGS='-I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c'
|
|
CURL_INCLUDE=''
|
|
CURL_LDFLAGS=''
|
|
CXX='mpiicpc'
|
|
CXXCPP='mpiicpc -E'
|
|
CXXDEPMODE='depmode=gcc3'
|
|
CXXFLAGS='-g -O2 -fopenmp -pthread'
|
|
CYGPATH_W='echo'
|
|
DCE_UUIDROOT=''
|
|
DCE_UUID_C_INCLUDE=''
|
|
DCE_UUID_C_LIB=''
|
|
DEFS=''
|
|
DEPDIR='.deps'
|
|
DLLTOOL='false'
|
|
DSYMUTIL=''
|
|
DUMPBIN=''
|
|
ECCODES_INCLUDE=''
|
|
ECCODES_LIBS=''
|
|
ECHO_C=''
|
|
ECHO_N='-n'
|
|
ECHO_T=''
|
|
EGREP='/bin/grep -E'
|
|
ENABLE_ALL_STATIC_FALSE=''
|
|
ENABLE_ALL_STATIC_TRUE=''
|
|
ENABLE_CDI_APP_FALSE=''
|
|
ENABLE_CDI_APP_TRUE=''
|
|
ENABLE_CDI_LIB=''
|
|
ENABLE_CDI_LIB_FALSE=''
|
|
ENABLE_CDI_LIB_TRUE=''
|
|
ENABLE_CGRIBEX=''
|
|
ENABLE_EXTRA=''
|
|
ENABLE_FORTRAN='true'
|
|
ENABLE_GRIB=''
|
|
ENABLE_GRIBAPI=''
|
|
ENABLE_HIRLAM_EXTENSIONS_FALSE=''
|
|
ENABLE_HIRLAM_EXTENSIONS_TRUE=''
|
|
ENABLE_IEG=''
|
|
ENABLE_MAGICS_FALSE=''
|
|
ENABLE_MAGICS_TRUE=''
|
|
ENABLE_NC2='yes'
|
|
ENABLE_NC4='yes'
|
|
ENABLE_NC4HDF5='yes'
|
|
ENABLE_NC4SZLIB=''
|
|
ENABLE_NETCDF='yes'
|
|
ENABLE_SERVICE=''
|
|
ENABLE_THREADS='yes'
|
|
EXEEXT=''
|
|
F77='mpiifort'
|
|
FFLAGS='-O2'
|
|
FGREP='/bin/grep -F'
|
|
FORTRAN_WORKS='yes'
|
|
GREP='/bin/grep'
|
|
GRIB_API_INCLUDE=''
|
|
GRIB_API_LIBS=''
|
|
HAVE_CXX11='1'
|
|
HAVE_LIBGRIB_API_FALSE=''
|
|
HAVE_LIBGRIB_API_TRUE=''
|
|
HDF5_INCLUDE=' -I/proj/nsc/users/weizhang/ticket/hdf5/install/include'
|
|
HDF5_LIBS=' -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -lhdf5'
|
|
HDF5_ROOT='/proj/nsc/users/weizhang/ticket/hdf5/install'
|
|
INSTALL_DATA='${INSTALL} -m 644'
|
|
INSTALL_PROGRAM='${INSTALL}'
|
|
INSTALL_SCRIPT='${INSTALL}'
|
|
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
|
|
LD='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64'
|
|
LDFLAGS='-L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib'
|
|
LIBOBJS=''
|
|
LIBS='-ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid'
|
|
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
|
|
LIPO=''
|
|
LN_S='ln -s'
|
|
LTLIBOBJS=''
|
|
LT_SYS_LIBRARY_PATH=''
|
|
MAGICS_INCLUDE=''
|
|
MAGICS_LIBS=''
|
|
MAGICS_ROOT=''
|
|
MAINT='#'
|
|
MAINTAINER_MODE_FALSE=''
|
|
MAINTAINER_MODE_TRUE='#'
|
|
MAKEINFO='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' makeinfo'
|
|
MANIFEST_TOOL=':'
|
|
MKDIR_P='/bin/mkdir -p'
|
|
NC_CONFIG='/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config'
|
|
NETCDF_INCLUDE=' -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include'
|
|
NETCDF_LIBS=' -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -lnetcdf'
|
|
NETCDF_ROOT='/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb'
|
|
NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B'
|
|
NMEDIT=''
|
|
OBJDUMP='objdump'
|
|
OBJEXT='o'
|
|
OPENMP_CFLAGS='-fopenmp'
|
|
OSSP_UUIDROOT=''
|
|
OSSP_UUID_C_INCLUDE=''
|
|
OSSP_UUID_C_LIB=''
|
|
OTOOL64=''
|
|
OTOOL=''
|
|
PACKAGE='cdo'
|
|
PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo'
|
|
PACKAGE_NAME='cdo'
|
|
PACKAGE_STRING='cdo 1.9.10'
|
|
PACKAGE_TARNAME='cdo'
|
|
PACKAGE_URL=''
|
|
PACKAGE_VERSION='1.9.10'
|
|
PATH_SEPARATOR=':'
|
|
PROJ_INCLUDE=''
|
|
PROJ_LDFLAGS=''
|
|
PTHREAD_CC='mpiicc'
|
|
PTHREAD_CFLAGS='-pthread'
|
|
PTHREAD_LIBS='-lpthread'
|
|
RANLIB='ranlib'
|
|
SED='/bin/sed'
|
|
SET_MAKE=''
|
|
SHELL='/bin/sh'
|
|
STRIP='strip'
|
|
SYSTEM_TYPE='x86_64-pc-linux-gnu'
|
|
SZLIB_INCLUDE=''
|
|
SZLIB_LIBS=''
|
|
THREADS_INCLUDE=''
|
|
THREADS_LIBS=''
|
|
UDUNITS_INCLUDE=' -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include'
|
|
UDUNITS_LDFLAGS=' -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -ludunits2'
|
|
USE_F77_FALSE='#'
|
|
USE_F77_TRUE=''
|
|
UTIL_LINUX_UUIDROOT=''
|
|
UTIL_LINUX_UUID_C_INCLUDE=''
|
|
UTIL_LINUX_UUID_C_LIB='-luuid'
|
|
UUID_C_INCLUDE=''
|
|
UUID_C_LIB='-luuid'
|
|
VERSION='1.9.10'
|
|
XML2_LIBS=''
|
|
ac_ct_AR='ar'
|
|
ac_ct_CC='mpiicc'
|
|
ac_ct_CXX='mpiicpc'
|
|
ac_ct_DUMPBIN=''
|
|
ac_ct_F77=''
|
|
am__EXEEXT_FALSE=''
|
|
am__EXEEXT_TRUE=''
|
|
am__fastdepCC_FALSE='#'
|
|
am__fastdepCC_TRUE=''
|
|
am__fastdepCXX_FALSE='#'
|
|
am__fastdepCXX_TRUE=''
|
|
am__include='include'
|
|
am__isrc=''
|
|
am__leading_dot='.'
|
|
am__nodep='_no'
|
|
am__quote=''
|
|
am__tar='$${TAR-tar} chof - "$$tardir"'
|
|
am__untar='$${TAR-tar} xf -'
|
|
ax_pthread_config=''
|
|
bindir='${exec_prefix}/bin'
|
|
build='x86_64-pc-linux-gnu'
|
|
build_alias=''
|
|
build_cpu='x86_64'
|
|
build_os='linux-gnu'
|
|
build_vendor='pc'
|
|
datadir='${datarootdir}'
|
|
datarootdir='${prefix}/share'
|
|
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
|
|
dvidir='${docdir}'
|
|
exec_prefix='NONE'
|
|
host='x86_64-pc-linux-gnu'
|
|
host_alias=''
|
|
host_cpu='x86_64'
|
|
host_os='linux-gnu'
|
|
host_vendor='pc'
|
|
htmldir='${docdir}'
|
|
includedir='${prefix}/include'
|
|
infodir='${datarootdir}/info'
|
|
install_sh='${SHELL} /proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/install-sh'
|
|
libdir='${exec_prefix}/lib'
|
|
libexecdir='${exec_prefix}/libexec'
|
|
localedir='${datarootdir}/locale'
|
|
localstatedir='${prefix}/var'
|
|
mandir='${datarootdir}/man'
|
|
mkdir_p='$(MKDIR_P)'
|
|
oldincludedir='/usr/include'
|
|
pdfdir='${docdir}'
|
|
prefix='/proj/nsc/users/weizhang/ticket/cdo/install'
|
|
program_transform_name='s,x,x,'
|
|
psdir='${docdir}'
|
|
sbindir='${exec_prefix}/sbin'
|
|
sharedstatedir='${prefix}/com'
|
|
subdirs=''
|
|
sysconfdir='${prefix}/etc'
|
|
target_alias=''
|
|
|
|
## ----------- ##
|
|
## confdefs.h. ##
|
|
## ----------- ##
|
|
|
|
/* confdefs.h */
|
|
#define PACKAGE_NAME "cdo"
|
|
#define PACKAGE_TARNAME "cdo"
|
|
#define PACKAGE_VERSION "1.9.10"
|
|
#define PACKAGE_STRING "cdo 1.9.10"
|
|
#define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
|
|
#define PACKAGE_URL ""
|
|
#define CDO "1.9.10"
|
|
#define PACKAGE "cdo"
|
|
#define VERSION "1.9.10"
|
|
#define STDC_HEADERS 1
|
|
#define HAVE_SYS_TYPES_H 1
|
|
#define HAVE_SYS_STAT_H 1
|
|
#define HAVE_STDLIB_H 1
|
|
#define HAVE_STRING_H 1
|
|
#define HAVE_MEMORY_H 1
|
|
#define HAVE_STRINGS_H 1
|
|
#define HAVE_INTTYPES_H 1
|
|
#define HAVE_STDINT_H 1
|
|
#define HAVE_UNISTD_H 1
|
|
#define HAVE_DLFCN_H 1
|
|
#define LT_OBJDIR ".libs/"
|
|
#define restrict __restrict
|
|
#define HAVE_CXX11 1
|
|
#define HAVE_STDLIB_H 1
|
|
#define HAVE_UNISTD_H 1
|
|
#define HAVE_SYS_PARAM_H 1
|
|
#define HAVE_GETPAGESIZE 1
|
|
#define HAVE_MMAP 1
|
|
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
|
|
#define HAVE_SYS_RESOURCE_H 1
|
|
#define HAVE_SYS_TIMES_H 1
|
|
#define HAVE_MALLOC_H 1
|
|
#define HAVE_GLOB_H 1
|
|
#define HAVE_FNMATCH_H 1
|
|
#define HAVE_WORDEXP_H 1
|
|
#define HAVE_EXECINFO_H 1
|
|
#define HAVE_MALLINFO 1
|
|
#define HAVE_BACKTRACE 1
|
|
#define HAVE_GETRLIMIT 1
|
|
#define CXX_VERSION "icpc (ICC) 18.0.1 20171018"
|
|
#define C_VERSION "icc (ICC) 18.0.1 20171018"
|
|
#define F77_VERSION "ifort (IFORT) 18.0.1 20171018"
|
|
#define SYSTEM_TYPE "x86_64-pc-linux-gnu"
|
|
#define HAVE_FEENABLEEXCEPT 1
|
|
#define HAVE_FENV_T___MXCSR 1
|
|
#define HAVE_CF_INTERFACE 1
|
|
#define HAVE_PTHREAD_PRIO_INHERIT 1
|
|
#define HAVE_LIBPTHREAD 1
|
|
#define HAVE_HDF5_H 1
|
|
#define HAVE_LIBHDF5 1
|
|
#define HAVE_NETCDF_H 1
|
|
#define HAVE_LIBNETCDF 1
|
|
#define HAVE_LIBNC_DAP 1
|
|
#define HAVE_NETCDF2 1
|
|
#define HAVE_NETCDF4 1
|
|
#define HAVE_NC4HDF5 1
|
|
#define HAVE_NC4HDF5_THREADSAFE 1
|
|
#define HAVE_UDUNITS2_H 1
|
|
#define HAVE_UDUNITS2_UDUNITS2_H 1
|
|
#define HAVE_LIBUDUNITS2 1
|
|
#define HAVE_UUID_UUID_H 1
|
|
#define HAVE_DECL_UUID_GENERATE 1
|
|
|
|
configure: exit 1
|