This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.10, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --with-cmor=/proj/nsc/users/weizhang/ticket/cmor/install/ --with-netcdf=/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb --with-hdf5=/proj/nsc/users/weizhang/ticket/hdf5/install --with-eccodes=/software/sse/manual/eccodes/2.10.0/nsc1-ENABLE-AEC-intel-2018a-eb --prefix=/proj/nsc/users/weizhang/ticket/cdo/install --with-udunits2=/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1 --with-jasper=/software/sse/easybuild/prefix/software/JasPer/2.0.14-GCCcore-6.4.0-nsc1 ## --------- ## ## Platform. ## ## --------- ## hostname = tetralith1.nsc.liu.se uname -m = x86_64 uname -r = 3.10.0-1160.24.1.el7.x86_64 uname -s = Linux uname -v = #1 SMP Thu Apr 8 19:51:47 UTC 2021 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /software/sse/manual/nsc-eb-scripts/1.2/nsc-wrappers PATH: /software/sse/manual/mpprun/4.1.3/nsc-wrappers PATH: /software/sse/manual/nsc-eb-scripts/1.2/bin PATH: /software/sse/manual/mpprun/4.1.3/bin PATH: /software/sse/easybuild/prefix/software/JasPer/2.0.14-GCCcore-6.4.0-nsc1/bin PATH: /software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/bin PATH: /software/sse/easybuild/prefix/software/expat/2.2.5-GCCcore-6.4.0-nsc1/bin PATH: /software/sse/easybuild/prefix/software/imkl/2018.1.163-iimpi-2018a/mkl/bin PATH: /software/sse/easybuild/prefix/software/imkl/2018.1.163-iimpi-2018a/bin PATH: /software/sse/easybuild/prefix/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64 PATH: /software/sse/easybuild/prefix/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64 PATH: /software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64 PATH: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin PATH: /software/sse/easybuild/prefix/software/GCCcore/6.4.0/bin PATH: /software/sse/manual/easybuild/4.3.3-nscf4a9479/easybuild-framework PATH: /software/sse/manual/eccodes/2.10.0/nsc1-ENABLE-AEC-intel-2018a-eb/bin PATH: /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin PATH: /software/tools/bin PATH: /bin PATH: /usr/bin PATH: /opt/thinlinc/bin PATH: /usr/local/bin PATH: /usr/bin/X11 PATH: /usr/local/sbin PATH: /usr/sbin PATH: /proj/nsc/users/weizhang PATH: /proj/nsc/users/weizhang/ownsoftware/cmake/cmake-3.15.0-rc1-Linux-x86_64/bin PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/scalasca/bin PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/scorep/bin PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/cubegui/bin PATH: /proj/nsc/users/weizhang/ownsoftware/scalasca/cubelib/bin PATH: /home/weizhang/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2872: checking build system type configure:2886: result: x86_64-pc-linux-gnu configure:2906: checking host system type configure:2919: result: x86_64-pc-linux-gnu configure:2958: checking for a BSD-compatible install configure:3026: result: /bin/install -c configure:3037: checking whether build environment is sane configure:3092: result: yes configure:3238: checking for a thread-safe mkdir -p configure:3277: result: /bin/mkdir -p configure:3284: checking for gawk configure:3300: found /bin/gawk configure:3311: result: gawk configure:3322: checking whether make sets $(MAKE) configure:3344: result: yes configure:3373: checking whether make supports nested variables configure:3390: result: yes configure:3520: checking whether to enable maintainer-specific portions of Makefiles configure:3529: result: no configure:3548: checking whether make supports the include directive configure:3563: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3566: $? = 0 configure:3585: result: yes (GNU style) configure:3655: checking for gcc configure:3682: result: mpiicc configure:3911: checking for C compiler version configure:3920: mpiicc --version >&5 icc (ICC) 18.0.1 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:3931: $? = 0 configure:3920: mpiicc -v >&5 mpiicc for the Intel(R) MPI Library 2018 Update 1 for Linux* Copyright(C) 2003-2017, Intel Corporation. All rights reserved. icc version 18.0.1 (gcc version 6.4.0 compatibility) configure:3931: $? = 0 configure:3920: mpiicc -V >&5 Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:3931: $? = 0 configure:3920: mpiicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' /lib/../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:3931: $? = 1 configure:3951: checking whether the C compiler works configure:3973: mpiicc -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:3977: $? = 0 configure:4025: result: yes configure:4028: checking for C compiler default output file name configure:4030: result: a.out configure:4036: checking for suffix of executables configure:4043: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:4047: $? = 0 configure:4069: result: configure:4091: checking whether we are cross compiling configure:4099: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:4103: $? = 0 configure:4110: ./conftest configure:4114: $? = 0 configure:4129: result: no configure:4134: checking for suffix of object files configure:4156: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:4160: $? = 0 configure:4181: result: o configure:4185: checking whether we are using the GNU C compiler configure:4204: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:4204: $? = 0 configure:4213: result: yes configure:4222: checking whether mpiicc accepts -g configure:4242: mpiicc -c -g -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:4242: $? = 0 configure:4283: result: yes configure:4300: checking for mpiicc option to accept ISO C89 configure:4363: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:4363: $? = 0 configure:4376: result: none needed configure:4401: checking whether mpiicc understands -c and -o together configure:4423: mpiicc -c conftest.c -o conftest2.o configure:4426: $? = 0 configure:4423: mpiicc -c conftest.c -o conftest2.o configure:4426: $? = 0 configure:4438: result: yes configure:4457: checking dependency style of mpiicc configure:4568: result: gcc3 configure:4633: checking for ar configure:4649: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/ar configure:4660: result: ar configure:4686: checking the archiver (ar) interface configure:4702: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:4702: $? = 0 configure:4704: ar cru libconftest.a conftest.o >&5 configure:4707: $? = 0 configure:4735: result: ar configure:4756: setting up libtool configure:4804: checking how to print strings configure:4831: result: printf configure:4852: checking for a sed that does not truncate output configure:4916: result: /bin/sed configure:4934: checking for grep that handles long lines and -e configure:4992: result: /bin/grep configure:4997: checking for egrep configure:5059: result: /bin/grep -E configure:5064: checking for fgrep configure:5126: result: /bin/grep -F configure:5161: checking for ld used by mpiicc configure:5228: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld configure:5235: checking if the linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld) is GNU ld configure:5250: result: yes configure:5262: checking for BSD- or MS-compatible name lister (nm) configure:5316: result: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B configure:5446: checking the name lister (/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B) interface configure:5453: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:5456: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B "conftest.o" configure:5459: output 0000000000000000 B some_variable configure:5466: result: BSD nm configure:5469: checking whether ln -s works configure:5473: result: yes configure:5481: checking the maximum length of command line arguments configure:5612: result: 1572864 configure:5660: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5700: result: func_convert_file_noop configure:5707: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5727: result: func_convert_file_noop configure:5734: checking for /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld option to reload object files configure:5741: result: -r configure:5815: checking for objdump configure:5831: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/objdump configure:5842: result: objdump configure:5874: checking how to recognize dependent libraries configure:6074: result: pass_all configure:6159: checking for dlltool configure:6189: result: no configure:6219: checking how to associate runtime and link libraries configure:6246: result: printf %s\n configure:6370: checking for archiver @FILE support configure:6387: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:6387: $? = 0 configure:6390: ar cru libconftest.a @conftest.lst >&5 configure:6393: $? = 0 configure:6398: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6401: $? = 1 configure:6413: result: @ configure:6471: checking for strip configure:6487: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/strip configure:6498: result: strip configure:6570: checking for ranlib configure:6586: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/ranlib configure:6597: result: ranlib configure:6699: checking command to parse /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B output from mpiicc object configure:6852: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:6855: $? = 0 configure:6859: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6862: $? = 0 configure:6928: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c conftstm.o >&5 configure:6931: $? = 0 configure:6969: result: ok configure:7016: checking for sysroot configure:7046: result: no configure:7053: checking for a working dd configure:7091: result: /bin/dd configure:7095: checking how to truncate binary pipes configure:7110: result: /bin/dd bs=4096 count=1 configure:7246: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:7249: $? = 0 configure:7439: checking for mt configure:7469: result: no configure:7489: checking if : is a manifest tool configure:7495: : '-?' configure:7503: result: no configure:8175: checking how to run the C preprocessor configure:8206: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:8206: $? = 0 configure:8220: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:8220: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | /* end confdefs.h. */ | #include configure:8245: result: mpiicc -E configure:8265: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:8265: $? = 0 configure:8279: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:8279: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | /* end confdefs.h. */ | #include configure:8308: checking for ANSI C header files configure:8328: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8328: $? = 0 configure:8401: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:8401: $? = 0 configure:8401: ./conftest configure:8401: $? = 0 configure:8412: result: yes configure:8425: checking for sys/types.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for sys/stat.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for stdlib.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for string.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for memory.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for strings.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for inttypes.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for stdint.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8425: checking for unistd.h configure:8425: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8425: $? = 0 configure:8425: result: yes configure:8439: checking for dlfcn.h configure:8439: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:8439: $? = 0 configure:8439: result: yes configure:8695: checking for objdir configure:8710: result: .libs configure:8974: checking if mpiicc supports -fno-rtti -fno-exceptions configure:8992: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fno-rtti -fno-exceptions conftest.c >&5 configure:8996: $? = 0 configure:9009: result: yes configure:9367: checking for mpiicc option to produce PIC configure:9374: result: -fPIC -DPIC configure:9382: checking if mpiicc PIC flag -fPIC -DPIC works configure:9400: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fPIC -DPIC -DPIC conftest.c >&5 configure:9404: $? = 0 configure:9417: result: yes configure:9446: checking if mpiicc static flag -static works configure:9474: result: no configure:9489: checking if mpiicc supports -c -o file.o configure:9510: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -o out/conftest2.o conftest.c >&5 configure:9514: $? = 0 configure:9536: result: yes configure:9544: checking if mpiicc supports -c -o file.o configure:9591: result: yes configure:9624: checking whether the mpiicc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries configure:10883: result: yes configure:10920: checking whether -lc should be explicitly linked in configure:10928: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:10931: $? = 0 configure:10946: mpiicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10949: $? = 0 configure:10963: result: no configure:11123: checking dynamic linker characteristics configure:11704: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11704: $? = 0 configure:11941: result: GNU/Linux ld.so configure:12063: checking how to hardcode library paths into programs configure:12088: result: immediate configure:12636: checking whether stripping libraries is possible configure:12641: result: yes configure:12676: checking if libtool supports shared libraries configure:12678: result: yes configure:12681: checking whether to build shared libraries configure:12706: result: yes configure:12709: checking whether to build static libraries configure:12713: result: yes configure:12798: checking for bash configure:12828: result: /bin/sh configure:12895: checking for gcc configure:12922: result: mpiicc configure:12987: checking for g++ configure:13014: result: mpiicpc configure:13036: checking for mpiicc option to accept ISO C99 configure:13185: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:13185: $? = 0 configure:13198: result: none needed configure:13326: checking for C++ compiler version configure:13335: mpiicpc --version >&5 icpc (ICC) 18.0.1 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:13346: $? = 0 configure:13335: mpiicpc -v >&5 mpiicpc for the Intel(R) MPI Library 2018 Update 1 for Linux* Copyright(C) 2003-2017, Intel Corporation. All rights reserved. icpc version 18.0.1 (gcc version 6.4.0 compatibility) configure:13346: $? = 0 configure:13335: mpiicpc -V >&5 Intel(R) C++ Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:13346: $? = 0 configure:13335: mpiicpc -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' /lib/../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' configure:13346: $? = 1 configure:13350: checking whether we are using the GNU C++ compiler configure:13369: mpiicpc -c -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5 configure:13369: $? = 0 configure:13378: result: yes configure:13387: checking whether mpiicpc accepts -g configure:13407: mpiicpc -c -g -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5 configure:13407: $? = 0 configure:13448: result: yes configure:13473: checking dependency style of mpiicpc configure:13584: result: gcc3 configure:13617: checking how to run the C++ preprocessor configure:13644: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp configure:13644: $? = 0 configure:13658: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp conftest.cpp(24): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:13658: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13683: result: mpiicpc -E configure:13703: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp configure:13703: $? = 0 configure:13717: mpiicpc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp conftest.cpp(24): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:13717: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13879: checking for ld used by mpiicpc configure:13946: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64 configure:13953: checking if the linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) is GNU ld configure:13968: result: yes configure:14023: checking whether the mpiicpc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries configure:15096: result: yes configure:15132: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5 configure:15135: $? = 0 configure:15616: checking for mpiicpc option to produce PIC configure:15623: result: -fPIC -DPIC configure:15631: checking if mpiicpc PIC flag -fPIC -DPIC works configure:15649: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15653: $? = 0 configure:15666: result: yes configure:15689: checking if mpiicpc static flag -static works configure:15717: result: no configure:15729: checking if mpiicpc supports -c -o file.o configure:15750: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -o out/conftest2.o conftest.cpp >&5 configure:15754: $? = 0 configure:15776: result: yes configure:15781: checking if mpiicpc supports -c -o file.o configure:15828: result: yes configure:15858: checking whether the mpiicpc linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries configure:15898: result: yes configure:16039: checking dynamic linker characteristics configure:16784: result: GNU/Linux ld.so configure:16849: checking how to hardcode library paths into programs configure:16874: result: immediate configure:17020: checking for Fortran 77 compiler version configure:17029: mpiifort --version >&5 ifort (IFORT) 18.0.1 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:17040: $? = 0 configure:17029: mpiifort -v >&5 mpiifort for the Intel(R) MPI Library 2018 Update 1 for Linux* Copyright(C) 2003-2017, Intel Corporation. All rights reserved. ifort version 18.0.1 configure:17040: $? = 0 configure:17029: mpiifort -V >&5 Intel(R) Fortran Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.1.163 Build 20171018 Copyright (C) 1985-2017 Intel Corporation. All rights reserved. configure:17040: $? = 0 configure:17029: mpiifort -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /software/sse/easybuild/prefix/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64_lin/for_main.o: In function `main': for_main.c:(.text+0x2a): undefined reference to `MAIN__' configure:17040: $? = 1 configure:17049: checking whether we are using the GNU Fortran 77 compiler configure:17062: mpiifort -c -O2 conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: => = . [ % ( : choke me ---------------^ compilation aborted for conftest.F (code 1) configure:17062: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:17071: result: no configure:17077: checking whether mpiifort accepts -g configure:17088: mpiifort -c -g conftest.f >&5 configure:17088: $? = 0 configure:17096: result: yes configure:17225: checking if libtool supports shared libraries configure:17227: result: yes configure:17230: checking whether to build shared libraries configure:17254: result: yes configure:17257: checking whether to build static libraries configure:17261: result: yes configure:17613: checking for mpiifort option to produce PIC configure:17620: result: -fPIC configure:17628: checking if mpiifort PIC flag -fPIC works configure:17646: mpiifort -c -O2 -fPIC conftest.f >&5 configure:17650: $? = 0 configure:17663: result: yes configure:17686: checking if mpiifort static flag -static works configure:17714: result: no configure:17726: checking if mpiifort supports -c -o file.o configure:17747: mpiifort -c -O2 -o out/conftest2.o conftest.f >&5 configure:17751: $? = 0 configure:17773: result: yes configure:17778: checking if mpiifort supports -c -o file.o configure:17825: result: yes configure:17855: checking whether the mpiifort linker (/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64) supports shared libraries configure:19064: result: yes configure:19205: checking dynamic linker characteristics configure:19944: result: GNU/Linux ld.so configure:20009: checking how to hardcode library paths into programs configure:20034: result: immediate configure:20067: checking for C/C++ restrict keyword configure:20092: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:20092: $? = 0 configure:20100: result: __restrict configure:20120: checking whether mpiicpc supports C++11 features by default configure:20414: mpiicpc -c -g -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.cpp >&5 configure:20414: $? = 0 configure:20421: result: yes configure:21106: checking for mpiicc option to support OpenMP configure:21121: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 conftest.c(28): error: identifier "choke" is undefined choke me ^ In file included from conftest.c(30): /software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(55): error: expected a ";" typedef enum omp_sched_t { ^ In file included from conftest.c(30): /software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(67): error: expected an identifier extern void __KAI_KMPC_CONVENTION omp_set_schedule (omp_sched_t, int); ^ In file included from conftest.c(30): /software/sse/easybuild/prefix/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/include/omp.h(84): error: identifier "omp_sched_t" is undefined extern void __KAI_KMPC_CONVENTION omp_get_schedule (omp_sched_t *, int *); ^ compilation aborted for conftest.c (code 2) configure:21121: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21139: mpiicc -o conftest -O2 -fopenmp -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:21139: $? = 0 configure:21153: result: -fopenmp configure:21207: checking for ar configure:21234: result: ar configure:21391: checking for ld configure:21418: result: /software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64 configure:21483: checking for nm configure:21510: result: /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B configure:21575: checking for ar configure:21602: result: ar configure:21667: checking for as configure:21683: found /software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/as configure:21694: result: as configure:21759: checking for dlltool configure:21786: result: false configure:21851: checking for objdump configure:21878: result: objdump configure:21943: checking for strip configure:21970: result: strip configure:22035: checking for ranlib configure:22062: result: ranlib configure:22098: checking for special C compiler options needed for large files configure:22143: result: no configure:22149: checking for _FILE_OFFSET_BITS value needed for large files configure:22174: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22174: $? = 0 configure:22206: result: no configure:22299: checking for stdlib.h configure:22299: result: yes configure:22299: checking for unistd.h configure:22299: result: yes configure:22299: checking for sys/param.h configure:22299: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22299: $? = 0 configure:22299: result: yes configure:22319: checking for getpagesize configure:22319: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22319: $? = 0 configure:22319: result: yes configure:22328: checking for working mmap configure:22475: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22475: $? = 0 configure:22475: ./conftest configure:22475: $? = 0 configure:22485: result: yes configure:22496: checking for struct stat.st_blksize configure:22496: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22496: $? = 0 configure:22496: result: yes configure:22510: checking sys/resource.h usability configure:22510: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22510: $? = 0 configure:22510: result: yes configure:22510: checking sys/resource.h presence configure:22510: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22510: $? = 0 configure:22510: result: yes configure:22510: checking for sys/resource.h configure:22510: result: yes configure:22522: checking sys/times.h usability configure:22522: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22522: $? = 0 configure:22522: result: yes configure:22522: checking sys/times.h presence configure:22522: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22522: $? = 0 configure:22522: result: yes configure:22522: checking for sys/times.h configure:22522: result: yes configure:22534: checking malloc.h usability configure:22534: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22534: $? = 0 configure:22534: result: yes configure:22534: checking malloc.h presence configure:22534: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22534: $? = 0 configure:22534: result: yes configure:22534: checking for malloc.h configure:22534: result: yes configure:22546: checking glob.h usability configure:22546: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22546: $? = 0 configure:22546: result: yes configure:22546: checking glob.h presence configure:22546: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22546: $? = 0 configure:22546: result: yes configure:22546: checking for glob.h configure:22546: result: yes configure:22558: checking fnmatch.h usability configure:22558: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22558: $? = 0 configure:22558: result: yes configure:22558: checking fnmatch.h presence configure:22558: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22558: $? = 0 configure:22558: result: yes configure:22558: checking for fnmatch.h configure:22558: result: yes configure:22570: checking wordexp.h usability configure:22570: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22570: $? = 0 configure:22570: result: yes configure:22570: checking wordexp.h presence configure:22570: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22570: $? = 0 configure:22570: result: yes configure:22570: checking for wordexp.h configure:22570: result: yes configure:22582: checking execinfo.h usability configure:22582: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22582: $? = 0 configure:22582: result: yes configure:22582: checking execinfo.h presence configure:22582: mpiicc -E -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c configure:22582: $? = 0 configure:22582: result: yes configure:22582: checking for execinfo.h configure:22582: result: yes configure:22596: checking for mallinfo configure:22596: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22596: $? = 0 configure:22596: result: yes configure:22607: checking for backtrace configure:22607: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22607: $? = 0 configure:22607: result: yes configure:22620: checking for getrlimit configure:22620: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22620: $? = 0 configure:22620: result: yes configure:22697: checking for feenableexcept configure:22697: mpiicc -o conftest -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c >&5 configure:22697: $? = 0 configure:22697: result: yes configure:22707: checking for fenv_t.__control configure:22707: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 conftest.c(53): error: struct "" has no field "__control" if (ac_aggr.__control) ^ compilation aborted for conftest.c (code 2) configure:22707: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:22707: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 conftest.c(53): error: struct "" has no field "__control" if (sizeof ac_aggr.__control) ^ compilation aborted for conftest.c (code 2) configure:22707: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:22707: result: no configure:22717: checking for fenv_t.__mxcsr configure:22717: mpiicc -c -O2 -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c conftest.c >&5 configure:22717: $? = 0 configure:22717: result: yes configure:22740: checking C preprocessor flags for Fortran calling convention cfortran.h configure:22826: result: -DgFortran (probed) configure:22861: checking if C externals constructed with cfortran.h work configure:22921: mpiicc -c -O2 -I./src -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5 configure:22921: $? = 0 configure:22922: Renaming C object file. configure:22925: $? = 0 configure:22943: mpiifort -c -O2 conftest.f >&5 configure:22943: $? = 0 configure:22944: Renaming Fortran object file. configure:22947: $? = 0 configure:23003: mpiifort -o conftest -O2 -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.f conftest_c.o conftest_f.o >&5 configure:23003: $? = 0 configure:23003: ./conftest configure:23003: $? = 0 configure:23037: result: yes configure:23276: checking whether mpiicc is Clang configure:23301: result: no configure:23363: checking whether pthreads work with "-pthread" and "-lpthread" configure:23468: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5 configure:23468: $? = 0 configure:23477: result: yes configure:23594: checking for joinable pthread attribute configure:23612: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5 configure:23612: $? = 0 configure:23620: result: PTHREAD_CREATE_JOINABLE configure:23634: checking whether more special flags are required for pthreads configure:23647: result: no configure:23655: checking for PTHREAD_PRIO_INHERIT configure:23672: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5 configure:23672: $? = 0 configure:23681: result: yes configure:24033: checking for szlib library configure:24035: result: suppressed configure:24201: checking hdf5.h usability configure:24201: mpiicc -c -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5 configure:24201: $? = 0 configure:24201: result: yes configure:24201: checking hdf5.h presence configure:24201: mpiicc -E -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c configure:24201: $? = 0 configure:24201: result: yes configure:24201: checking for hdf5.h configure:24201: result: yes configure:24211: checking for library containing H5Fopen configure:24242: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lpthread >&5 /tmp/iccfGZRMZ.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `H5Fopen' configure:24242: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:24242: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5 -lpthread >&5 configure:24242: $? = 0 configure:24259: result: -lhdf5 configure:24271: checking for library containing H5DSis_scale configure:24302: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5 -lpthread >&5 /tmp/icceDFaWE.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `H5DSis_scale' configure:24302: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:24302: mpiicc -o conftest -O2 -fopenmp -pthread -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 configure:24302: $? = 0 configure:24319: result: -lhdf5_hl configure:24546: checking netcdf.h usability configure:24546: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c >&5 configure:24546: $? = 0 configure:24546: result: yes configure:24546: checking netcdf.h presence configure:24546: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran conftest.c configure:24546: $? = 0 configure:24546: result: yes configure:24546: checking for netcdf.h configure:24546: result: yes configure:24556: checking for library containing nc_open configure:24587: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 /tmp/iccPYC09a.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `nc_open' configure:24587: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:24587: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 configure:24587: $? = 0 configure:24604: result: -lnetcdf configure:24619: checking nc-config script configure:24623: checking for nc-config configure:24639: found /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config configure:24650: result: /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config configure:24659: checking netcdf's OpenDAP support configure:24665: result: yes configure:24671: checking netcdf's nc2 support configure:24678: result: yes configure:24684: checking netcdf's nc4 support configure:24691: result: yes configure:24697: checking netcdf's nc4/hdf5 support configure:24704: result: yes configure:24730: checking for library containing H5TS_mutex_lock configure:24761: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 configure:24761: $? = 0 configure:24778: result: none required configure:24892: checking udunits2.h usability configure:24892: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5 configure:24892: $? = 0 configure:24892: result: yes configure:24892: checking udunits2.h presence configure:24892: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c configure:24892: $? = 0 configure:24892: result: yes configure:24892: checking for udunits2.h configure:24892: result: yes configure:24904: checking udunits2/udunits2.h usability configure:24904: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5 configure:24904: $? = 0 configure:24904: result: yes configure:24904: checking udunits2/udunits2.h presence configure:24904: mpiicc -E -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c configure:24904: $? = 0 configure:24904: result: yes configure:24904: checking for udunits2/udunits2.h configure:24904: result: yes configure:24914: checking for library containing ut_parse configure:24945: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 /tmp/iccqRVyb4.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `ut_parse' configure:24945: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_NC4HDF5_THREADSAFE 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_UDUNITS2_UDUNITS2_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ut_parse (); | int | main () | { | return ut_parse (); | ; | return 0; | } configure:24945: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 configure:24945: $? = 0 configure:24962: result: -ludunits2 configure:25133: checking for uuid/uuid.h extra include path configure:25153: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5 configure:25153: $? = 0 configure:25180: result: (none required) configure:25208: checking for library containing uuid_generate configure:25241: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 /tmp/icciBs0ax.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `uuid_generate' configure:25241: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_NC4HDF5_THREADSAFE 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_UDUNITS2_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:25241: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib conftest.c -luuid -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 configure:25241: $? = 0 configure:25269: result: -luuid configure:25305: checking for uuid/uuid.h configure:25305: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5 configure:25305: $? = 0 configure:25305: result: yes configure:25311: checking whether uuid_generate is declared configure:25311: mpiicc -c -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 conftest.c >&5 configure:25311: $? = 0 configure:25311: result: yes configure:25967: checking for library containing cmor_load_table configure:25998: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib conftest.c -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 /tmp/icc868xez.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `cmor_load_table' configure:25998: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_NC4HDF5_THREADSAFE 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_UDUNITS2_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cmor_load_table (); | int | main () | { | return cmor_load_table (); | ; | return 0; | } configure:25998: mpiicc -o conftest -O2 -fopenmp -pthread -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib conftest.c -lcmor -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid >&5 ld: warning: libhdf5_hl.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5_hl.so.100 ld: warning: libhdf5.so.10, needed by /software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib/libnetcdf.so, may conflict with libhdf5.so.103 /proj/nsc/users/weizhang/ticket/hdf5/install/lib/libcmor.a(cmor.o): In function `cmor_generate_uuid': /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3075: undefined reference to `uuid_create' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3076: undefined reference to `uuid_make' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3084: undefined reference to `uuid_export' /proj/nsc/users/weizhang/ticket/cmor/cmor/Src/cmor.c:3100: undefined reference to `uuid_destroy' configure:25998: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.10" | #define PACKAGE_STRING "cdo 1.9.10" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.10" | #define PACKAGE "cdo" | #define VERSION "1.9.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" | #define C_VERSION "icc (ICC) 18.0.1 20171018" | #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_NC4HDF5_THREADSAFE 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_UDUNITS2_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cmor_load_table (); | int | main () | { | return cmor_load_table (); | ; | return 0; | } configure:26015: result: no configure:26024: error: Could not link to cmor library! ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpiicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-O2 ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpiicpc ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set=set ac_cv_env_F77_value=mpiifort ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value=-O2 ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=no ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_have_decl_uuid_generate=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_udunits2_h=yes ac_cv_header_udunits2_udunits2_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_uuid_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpiicc -E' ac_cv_prog_CXXCPP='mpiicpc -E' ac_cv_prog_NC_CONFIG=/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=mpiicc ac_cv_prog_ac_ct_CXX=mpiicpc ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock='none required' ac_cv_search_cmor_load_table=no ac_cv_search_nc_open=-lnetcdf ac_cv_search_ut_parse=-ludunits2 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_c_include_uuid_uuid_h= acx_cv_cf_flag='-DgFortran (probed)' acx_cv_cfortran_works=yes acx_cv_f77_cf_flag=-DgFortran acx_cv_option_search_uuid_generate_c=' -luuid ' am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_CLANG=no ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_PTHREAD_SPECIAL_FLAGS=no ax_cv_cxx_compile_cxx11=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld lt_cv_path_LDCXX='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64' lt_cv_path_NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' autoconf' AUTOHEADER='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' autoheader' AUTOMAKE='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' automake-1.16' AWK='gawk' BASH='/bin/sh' CC='mpiicc' CCDEPMODE='depmode=gcc3' CFLAGS='-O2 -fopenmp -pthread' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='mpiicc -E' CPPFLAGS='-I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include -I/proj/nsc/users/weizhang/ticket/hdf5/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install/include/cdTime/cdunifpp -I/proj/nsc/users/weizhang/ticket/cmor/install/include/json-c -DgFortran -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include/udunits2 -I/proj/nsc/users/weizhang/ticket/cmor/install//include -I/proj/nsc/users/weizhang/ticket/cmor/install//include/cdTime -I/proj/nsc/users/weizhang/ticket/cmor/install//include/json-c' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='mpiicpc' CXXCPP='mpiicpc -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp -pthread' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_APP_FALSE='' ENABLE_CDI_APP_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_FORTRAN='true' ENABLE_GRIB='' ENABLE_GRIBAPI='' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NC4SZLIB='' ENABLE_NETCDF='yes' ENABLE_SERVICE='' ENABLE_THREADS='yes' EXEEXT='' F77='mpiifort' FFLAGS='-O2' FGREP='/bin/grep -F' FORTRAN_WORKS='yes' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_CXX11='1' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='' HDF5_INCLUDE=' -I/proj/nsc/users/weizhang/ticket/hdf5/install/include' HDF5_LIBS=' -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -lhdf5' HDF5_ROOT='/proj/nsc/users/weizhang/ticket/hdf5/install' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/software/sse/manual/mpprun/4.1.3/nsc-wrappers/ld -m elf_x86_64' LDFLAGS='-L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -L/proj/nsc/users/weizhang/ticket/hdf5/install/lib -L/proj/nsc/users/weizhang/ticket/cmor/install/lib -lcmor -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -L/proj/nsc/users/weizhang/ticket/cmor/install//lib' LIBOBJS='' LIBS='-ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lpthread -luuid' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} '\''/proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/missing'\'' makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/bin/nc-config' NETCDF_INCLUDE=' -I/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/include' NETCDF_LIBS=' -L/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb/lib -lnetcdf' NETCDF_ROOT='/software/sse/manual/netcdf/4.4.1.1/HDF5-1.8.19-nsc1-intel-2018a-eb' NM='/software/sse/easybuild/prefix/software/binutils/2.28-GCCcore-6.4.0/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.10' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.10' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='mpiicc' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='-lpthread' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-pc-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE=' -I/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/include' UDUNITS_LDFLAGS=' -L/software/sse/easybuild/prefix/software/UDUNITS/2.2.26-intel-2018a-nsc1/lib -ludunits2' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='-luuid' UUID_C_INCLUDE='' UUID_C_LIB='-luuid' VERSION='1.9.10' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='mpiicc' ac_ct_CXX='mpiicpc' ac_ct_DUMPBIN='' ac_ct_F77='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /proj/nsc/users/weizhang/ticket/cdo/cdo-1.9.10/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/proj/nsc/users/weizhang/ticket/cdo/install' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.9.10" #define PACKAGE_STRING "cdo 1.9.10" #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.9.10" #define PACKAGE "cdo" #define VERSION "1.9.10" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_CXX11 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_MALLINFO 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define CXX_VERSION "icpc (ICC) 18.0.1 20171018" #define C_VERSION "icc (ICC) 18.0.1 20171018" #define F77_VERSION "ifort (IFORT) 18.0.1 20171018" #define SYSTEM_TYPE "x86_64-pc-linux-gnu" #define HAVE_FEENABLEEXCEPT 1 #define HAVE_FENV_T___MXCSR 1 #define HAVE_CF_INTERFACE 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_NC4HDF5_THREADSAFE 1 #define HAVE_UDUNITS2_H 1 #define HAVE_UDUNITS2_UDUNITS2_H 1 #define HAVE_LIBUDUNITS2 1 #define HAVE_UUID_UUID_H 1 #define HAVE_DECL_UUID_GENERATE 1 configure: exit 1