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RE: Daily observations as fractions of the annual mean va... ยป config.log

Predrag Ignjacevic, 2020-05-26 01:00

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.9rc3, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --enable-netcdf4 --enable-zlib --with-netcdf=/usr/ --with-hdf5=/usr/

## --------- ##
## Platform. ##
## --------- ##

hostname = DESKTOP-7ES6GS7
uname -m = x86_64
uname -r = 4.4.0-18362-Microsoft
uname -s = Linux
uname -v = #836-Microsoft Mon May 05 16:04:00 PST 2020

/usr/bin/uname -p = x86_64
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /snap/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2875: checking build system type
configure:2889: result: x86_64-pc-linux-gnu
configure:2909: checking host system type
configure:2922: result: x86_64-pc-linux-gnu
configure:2961: checking for a BSD-compatible install
configure:3029: result: /usr/bin/install -c
configure:3040: checking whether build environment is sane
configure:3095: result: yes
configure:3244: checking for a thread-safe mkdir -p
configure:3283: result: /usr/bin/mkdir -p
configure:3290: checking for gawk
configure:3306: found /usr/bin/gawk
configure:3317: result: gawk
configure:3328: checking whether make sets $(MAKE)
configure:3350: result: yes
configure:3379: checking whether make supports nested variables
configure:3396: result: yes
configure:3525: checking whether to enable maintainer-specific portions of Makefiles
configure:3534: result: no
configure:3553: checking whether make supports the include directive
configure:3568: make -f confmf.GNU && cat confinc.out
this is the am__doit target
configure:3571: $? = 0
configure:3590: result: yes (GNU style)
configure:3660: checking for gcc
configure:3676: found /usr/bin/gcc
configure:3687: result: gcc
configure:3916: checking for C compiler version
configure:3925: gcc --version >&5
gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3936: $? = 0
configure:3925: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2)
configure:3936: $? = 0
configure:3925: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3936: $? = 1
configure:3925: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3936: $? = 1
configure:3956: checking whether the C compiler works
configure:3978: gcc conftest.c >&5
configure:3982: $? = 0
configure:4030: result: yes
configure:4033: checking for C compiler default output file name
configure:4035: result: a.out
configure:4041: checking for suffix of executables
configure:4048: gcc -o conftest conftest.c >&5
configure:4052: $? = 0
configure:4074: result:
configure:4096: checking whether we are cross compiling
configure:4104: gcc -o conftest conftest.c >&5
configure:4108: $? = 0
configure:4115: ./conftest
configure:4119: $? = 0
configure:4107: result: no
configure:4112: checking for suffix of object files
configure:4134: gcc -c conftest.c >&5
configure:4138: $? = 0
configure:4159: result: o
configure:4163: checking whether we are using the GNU C compiler
configure:4182: gcc -c conftest.c >&5
configure:4182: $? = 0
configure:4191: result: yes
configure:4200: checking whether gcc accepts -g
configure:4220: gcc -c -g conftest.c >&5
configure:4220: $? = 0
configure:4261: result: yes
configure:4278: checking for gcc option to accept ISO C89
configure:4341: gcc -c -g -O2 conftest.c >&5
configure:4341: $? = 0
configure:4354: result: none needed
configure:4379: checking whether gcc understands -c and -o together
configure:4401: gcc -c conftest.c -o conftest2.o
configure:4404: $? = 0
configure:4401: gcc -c conftest.c -o conftest2.o
configure:4404: $? = 0
configure:4416: result: yes
configure:4435: checking dependency style of gcc
configure:4546: result: gcc3
configure:4611: checking for ar
configure:4627: found /usr/bin/ar
configure:4638: result: ar
configure:4664: checking the archiver (ar) interface
configure:4680: gcc -c -g -O2 conftest.c >&5
configure:4680: $? = 0
configure:4682: ar cru libconftest.a conftest.o >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:4685: $? = 0
configure:4684: result: ar
configure:4705: setting up libtool
configure:4753: checking how to print strings
configure:4780: result: printf
configure:4801: checking for a sed that does not truncate output
configure:4865: result: /usr/bin/sed
configure:4883: checking for grep that handles long lines and -e
configure:4941: result: /usr/bin/grep
configure:4946: checking for egrep
configure:5008: result: /usr/bin/grep -E
configure:5013: checking for fgrep
configure:5075: result: /usr/bin/grep -F
configure:5110: checking for ld used by gcc
configure:5177: result: /usr/bin/ld
configure:5184: checking if the linker (/usr/bin/ld) is GNU ld
configure:5199: result: yes
configure:5211: checking for BSD- or MS-compatible name lister (nm)
configure:5265: result: /usr/bin/nm -B
configure:5395: checking the name lister (/usr/bin/nm -B) interface
configure:5402: gcc -c -g -O2 conftest.c >&5
configure:5405: /usr/bin/nm -B "conftest.o"
configure:5408: output
0000000000000000 B some_variable
configure:5409: result: BSD nm
configure:5412: checking whether ln -s works
configure:5416: result: yes
configure:5424: checking the maximum length of command line arguments
configure:5555: result: 1572864
configure:5603: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5643: result: func_convert_file_noop
configure:5650: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5670: result: func_convert_file_noop
configure:5677: checking for /usr/bin/ld option to reload object files
configure:5684: result: -r
configure:5758: checking for objdump
configure:5774: found /usr/bin/objdump
configure:5785: result: objdump
configure:5817: checking how to recognize dependent libraries
configure:6017: result: pass_all
configure:6102: checking for dlltool
configure:6132: result: no
configure:6162: checking how to associate runtime and link libraries
configure:6189: result: printf %s\n
configure:6329: checking for archiver @FILE support
configure:6346: gcc -c -g -O2 conftest.c >&5
configure:6346: $? = 0
configure:6349: ar cr libconftest.a @conftest.lst >&5
configure:6352: $? = 0
configure:6357: ar cr libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6360: $? = 1
configure:6359: result: @
configure:6417: checking for strip
configure:6433: found /usr/bin/strip
configure:6444: result: strip
configure:6516: checking for ranlib
configure:6532: found /usr/bin/ranlib
configure:6543: result: ranlib
configure:6645: checking command to parse /usr/bin/nm -B output from gcc object
configure:6798: gcc -c -g -O2 conftest.c >&5
configure:6801: $? = 0
configure:6805: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6808: $? = 0
configure:6874: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:6877: $? = 0
configure:6915: result: ok
configure:6962: checking for sysroot
configure:6992: result: no
configure:6999: checking for a working dd
configure:7037: result: /usr/bin/dd
configure:7041: checking how to truncate binary pipes
configure:7056: result: /usr/bin/dd bs=4096 count=1
configure:7192: gcc -c -g -O2 conftest.c >&5
configure:7195: $? = 0
configure:7385: checking for mt
configure:7401: found /usr/bin/mt
configure:7412: result: mt
configure:7435: checking if mt is a manifest tool
configure:7441: mt '-?'
configure:7449: result: no
configure:8126: checking how to run the C preprocessor
configure:8157: gcc -E conftest.c
configure:8157: $? = 0
configure:8171: gcc -E conftest.c
conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory
12 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8171: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8196: result: gcc -E
configure:8216: gcc -E conftest.c
configure:8216: $? = 0
configure:8230: gcc -E conftest.c
conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory
12 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8230: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8259: checking for ANSI C header files
configure:8279: gcc -c -g -O2 conftest.c >&5
configure:8279: $? = 0
configure:8352: gcc -o conftest -g -O2 conftest.c >&5
configure:8352: $? = 0
configure:8352: ./conftest
configure:8352: $? = 0
configure:8363: result: yes
configure:8376: checking for sys/types.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for sys/stat.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for stdlib.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for string.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for memory.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for strings.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for inttypes.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for stdint.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8376: checking for unistd.h
configure:8376: gcc -c -g -O2 conftest.c >&5
configure:8376: $? = 0
configure:8376: result: yes
configure:8390: checking for dlfcn.h
configure:8390: gcc -c -g -O2 conftest.c >&5
configure:8390: $? = 0
configure:8390: result: yes
configure:8646: checking for objdir
configure:8661: result: .libs
configure:8925: checking if gcc supports -fno-rtti -fno-exceptions
configure:8943: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/D/ObjC++ but not for C
configure:8947: $? = 0
configure:8960: result: no
configure:9318: checking for gcc option to produce PIC
configure:9325: result: -fPIC -DPIC
configure:9333: checking if gcc PIC flag -fPIC -DPIC works
configure:9351: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:9355: $? = 0
configure:9368: result: yes
configure:9397: checking if gcc static flag -static works
configure:9425: result: yes
configure:9440: checking if gcc supports -c -o file.o
configure:9461: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:9465: $? = 0
configure:9487: result: yes
configure:9495: checking if gcc supports -c -o file.o
configure:9542: result: yes
configure:9575: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10836: result: yes
configure:10873: checking whether -lc should be explicitly linked in
configure:10881: gcc -c -g -O2 conftest.c >&5
configure:10884: $? = 0
configure:10899: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:10902: $? = 0
configure:10916: result: no
configure:11076: checking dynamic linker characteristics
configure:11657: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:11657: $? = 0
configure:11894: result: GNU/Linux ld.so
configure:12016: checking how to hardcode library paths into programs
configure:12041: result: immediate
configure:12589: checking whether stripping libraries is possible
configure:12598: result: yes
configure:12640: checking if libtool supports shared libraries
configure:12642: result: yes
configure:12645: checking whether to build shared libraries
configure:12670: result: yes
configure:12673: checking whether to build static libraries
configure:12677: result: yes
configure:9541: checking for bash
configure:9571: result: /bin/bash
configure:9638: checking for gcc
configure:9665: result: gcc
configure:9730: checking for g++
configure:9746: found /usr/bin/g++
configure:9757: result: g++
configure:9779: checking for gcc option to accept ISO C99
configure:9928: gcc -c -g -O2 conftest.c >&5
configure:9928: $? = 0
configure:9941: result: none needed
configure:10069: checking for C++ compiler version
configure:10078: g++ --version >&5
g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:10089: $? = 0
configure:10078: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2)
configure:10089: $? = 0
configure:10078: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:10089: $? = 1
configure:10078: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:10089: $? = 1
configure:10093: checking whether we are using the GNU C++ compiler
configure:10112: g++ -c conftest.cpp >&5
configure:10112: $? = 0
configure:10121: result: yes
configure:10130: checking whether g++ accepts -g
configure:10150: g++ -c -g conftest.cpp >&5
configure:10150: $? = 0
configure:10191: result: yes
configure:10216: checking dependency style of g++
configure:10327: result: gcc3
configure:10360: checking how to run the C++ preprocessor
configure:10387: g++ -E conftest.cpp
configure:10387: $? = 0
configure:10401: g++ -E conftest.cpp
conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory
24 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:10401: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:10426: result: g++ -E
configure:10446: g++ -E conftest.cpp
configure:10446: $? = 0
configure:10460: g++ -E conftest.cpp
conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory
24 | #include <ac_nonexistent.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:10460: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:10622: checking for ld used by g++
configure:10689: result: /usr/bin/ld -m elf_x86_64
configure:10696: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:10711: result: yes
configure:10766: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:11840: result: yes
configure:11876: g++ -c -g -O2 conftest.cpp >&5
configure:11879: $? = 0
configure:12360: checking for g++ option to produce PIC
configure:12367: result: -fPIC -DPIC
configure:12375: checking if g++ PIC flag -fPIC -DPIC works
configure:12393: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:12397: $? = 0
configure:12410: result: yes
configure:12433: checking if g++ static flag -static works
configure:12461: result: yes
configure:12473: checking if g++ supports -c -o file.o
configure:12494: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:12498: $? = 0
configure:12520: result: yes
configure:12525: checking if g++ supports -c -o file.o
configure:12572: result: yes
configure:12602: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:12642: result: yes
configure:12783: checking dynamic linker characteristics
configure:13528: result: GNU/Linux ld.so
configure:13593: checking how to hardcode library paths into programs
configure:13618: result: immediate
configure:12557: checking for g77
configure:12587: result: no
configure:12557: checking for xlf
configure:12587: result: no
configure:12557: checking for f77
configure:12573: found /usr/bin/f77
configure:12584: result: f77
configure:12610: checking for Fortran 77 compiler version
configure:12619: f77 --version >&5
GNU Fortran (Ubuntu 9.3.0-10ubuntu2) 9.3.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12630: $? = 0
configure:12619: f77 -v >&5
Using built-in specs.
COLLECT_GCC=f77
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2)
configure:12630: $? = 0
configure:12619: f77 -V >&5
f77: error: unrecognized command line option '-V'
f77: fatal error: no input files
compilation terminated.
configure:12630: $? = 1
configure:12619: f77 -qversion >&5
f77: error: unrecognized command line option '-qversion'; did you mean '--version'?
f77: fatal error: no input files
compilation terminated.
configure:12630: $? = 1
configure:12639: checking whether we are using the GNU Fortran 77 compiler
configure:12652: f77 -c conftest.F >&5
configure:12652: $? = 0
configure:12661: result: yes
configure:12667: checking whether f77 accepts -g
configure:12678: f77 -c -g conftest.f >&5
configure:12678: $? = 0
configure:12686: result: yes
configure:12815: checking if libtool supports shared libraries
configure:12817: result: yes
configure:12820: checking whether to build shared libraries
configure:12844: result: yes
configure:12847: checking whether to build static libraries
configure:12851: result: yes
configure:13203: checking for f77 option to produce PIC
configure:13210: result: -fPIC
configure:13218: checking if f77 PIC flag -fPIC works
configure:13236: f77 -c -g -O2 -fPIC conftest.f >&5
configure:13240: $? = 0
configure:13253: result: yes
configure:13276: checking if f77 static flag -static works
configure:13304: result: yes
configure:13316: checking if f77 supports -c -o file.o
configure:13337: f77 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:13341: $? = 0
configure:13363: result: yes
configure:13368: checking if f77 supports -c -o file.o
configure:13415: result: yes
configure:13445: checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14656: result: yes
configure:14797: checking dynamic linker characteristics
configure:15536: result: GNU/Linux ld.so
configure:15601: checking how to hardcode library paths into programs
configure:15626: result: immediate
configure:13347: checking for C/C++ restrict keyword
configure:13372: gcc -c -g -O2 conftest.c >&5
configure:13372: $? = 0
configure:13380: result: __restrict
configure:13400: checking whether g++ supports C++11 features by default
configure:13694: g++ -c -g -O2 conftest.cpp >&5
configure:13694: $? = 0
configure:13701: result: yes
configure:14386: checking for gcc option to support OpenMP
configure:14401: gcc -o conftest -g -O2 conftest.c >&5
conftest.c:28:2: error: unknown type name 'choke'
28 | choke me
| ^~~~~
conftest.c:28:10: error: expected ';' before 'typedef'
28 | choke me
| ^
| ;
configure:14401: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| /* end confdefs.h. */
|
| #ifndef _OPENMP
| choke me
| #endif
| #include <omp.h>
| int main () { return omp_get_num_threads (); }
|
configure:14419: gcc -o conftest -g -O2 -fopenmp conftest.c >&5
configure:14419: $? = 0
configure:14433: result: -fopenmp
configure:14487: checking for ar
configure:14514: result: ar
configure:14671: checking for ld
configure:14698: result: /usr/bin/ld -m elf_x86_64
configure:14763: checking for nm
configure:14790: result: /usr/bin/nm -B
configure:14855: checking for ar
configure:14882: result: ar
configure:14947: checking for as
configure:14963: found /usr/bin/as
configure:14974: result: as
configure:15039: checking for dlltool
configure:15066: result: false
configure:15131: checking for objdump
configure:15158: result: objdump
configure:15223: checking for strip
configure:15250: result: strip
configure:15315: checking for ranlib
configure:15342: result: ranlib
configure:15378: checking for special C compiler options needed for large files
configure:15423: result: no
configure:15429: checking for _FILE_OFFSET_BITS value needed for large files
configure:15454: gcc -c -g -O2 conftest.c >&5
configure:15454: $? = 0
configure:15486: result: no
configure:15579: checking for stdlib.h
configure:15579: result: yes
configure:15579: checking for unistd.h
configure:15579: result: yes
configure:15579: checking for sys/param.h
configure:15579: gcc -c -g -O2 conftest.c >&5
configure:15579: $? = 0
configure:15579: result: yes
configure:15599: checking for getpagesize
configure:15599: gcc -o conftest -g -O2 conftest.c >&5
configure:15599: $? = 0
configure:15599: result: yes
configure:15608: checking for working mmap
configure:15755: gcc -o conftest -g -O2 conftest.c >&5
configure:15755: $? = 0
configure:15755: ./conftest
configure:15755: $? = 0
configure:15765: result: yes
configure:15776: checking for struct stat.st_blksize
configure:15776: gcc -c -g -O2 conftest.c >&5
configure:15776: $? = 0
configure:15776: result: yes
configure:15790: checking sys/resource.h usability
configure:15790: gcc -c -g -O2 conftest.c >&5
configure:15790: $? = 0
configure:15790: result: yes
configure:15790: checking sys/resource.h presence
configure:15790: gcc -E conftest.c
configure:15790: $? = 0
configure:15790: result: yes
configure:15790: checking for sys/resource.h
configure:15790: result: yes
configure:15802: checking sys/times.h usability
configure:15802: gcc -c -g -O2 conftest.c >&5
configure:15802: $? = 0
configure:15802: result: yes
configure:15802: checking sys/times.h presence
configure:15802: gcc -E conftest.c
configure:15802: $? = 0
configure:15802: result: yes
configure:15802: checking for sys/times.h
configure:15802: result: yes
configure:15814: checking malloc.h usability
configure:15814: gcc -c -g -O2 conftest.c >&5
configure:15814: $? = 0
configure:15814: result: yes
configure:15814: checking malloc.h presence
configure:15814: gcc -E conftest.c
configure:15814: $? = 0
configure:15814: result: yes
configure:15814: checking for malloc.h
configure:15814: result: yes
configure:15826: checking glob.h usability
configure:15826: gcc -c -g -O2 conftest.c >&5
configure:15826: $? = 0
configure:15826: result: yes
configure:15826: checking glob.h presence
configure:15826: gcc -E conftest.c
configure:15826: $? = 0
configure:15826: result: yes
configure:15826: checking for glob.h
configure:15826: result: yes
configure:15838: checking fnmatch.h usability
configure:15838: gcc -c -g -O2 conftest.c >&5
configure:15838: $? = 0
configure:15838: result: yes
configure:15838: checking fnmatch.h presence
configure:15838: gcc -E conftest.c
configure:15838: $? = 0
configure:15838: result: yes
configure:15838: checking for fnmatch.h
configure:15838: result: yes
configure:15850: checking wordexp.h usability
configure:15850: gcc -c -g -O2 conftest.c >&5
configure:15850: $? = 0
configure:15850: result: yes
configure:15850: checking wordexp.h presence
configure:15850: gcc -E conftest.c
configure:15850: $? = 0
configure:15850: result: yes
configure:15850: checking for wordexp.h
configure:15850: result: yes
configure:15862: checking execinfo.h usability
configure:15862: gcc -c -g -O2 conftest.c >&5
configure:15862: $? = 0
configure:15862: result: yes
configure:15862: checking execinfo.h presence
configure:15862: gcc -E conftest.c
configure:15862: $? = 0
configure:15862: result: yes
configure:15862: checking for execinfo.h
configure:15862: result: yes
configure:15876: checking for mallinfo
configure:15876: gcc -o conftest -g -O2 conftest.c >&5
configure:15876: $? = 0
configure:15876: result: yes
configure:15887: checking for backtrace
configure:15887: gcc -o conftest -g -O2 conftest.c >&5
configure:15887: $? = 0
configure:15887: result: yes
configure:15900: checking for getrlimit
configure:15900: gcc -o conftest -g -O2 conftest.c >&5
configure:15900: $? = 0
configure:15900: result: yes
configure:15975: checking for floor in -lm
configure:16000: gcc -o conftest -g -O2 conftest.c -lm >&5
conftest.c:53:6: warning: conflicting types for built-in function 'floor'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
53 | char floor ();
| ^~~~~
conftest.c:1:1: note: 'floor' is declared in header '<math.h>'
1 | /* confdefs.h */
configure:16000: $? = 0
configure:16009: result: yes
configure:16023: checking for feenableexcept
configure:16023: gcc -o conftest -g -O2 conftest.c -lm >&5
configure:16023: $? = 0
configure:16023: result: yes
configure:16033: checking for fenv_t.__control
configure:16033: gcc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:54:13: error: 'fenv_t' {aka 'struct <anonymous>'} has no member named '__control'; did you mean '__control_word'?
54 | if (ac_aggr.__control)
| ^~~~~~~~~
| __control_word
configure:16033: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:16033: gcc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:54:20: error: 'fenv_t' {aka 'struct <anonymous>'} has no member named '__control'; did you mean '__control_word'?
54 | if (sizeof ac_aggr.__control)
| ^~~~~~~~~
| __control_word
configure:16033: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (sizeof ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:16033: result: no
configure:16043: checking for fenv_t.__mxcsr
configure:16043: gcc -c -g -O2 conftest.c >&5
configure:16043: $? = 0
configure:16043: result: yes
configure:16066: checking C preprocessor flags for Fortran calling convention cfortran.h
configure:16152: result: -DgFortran (probed)
configure:16187: checking if C externals constructed with cfortran.h work
configure:16247: gcc -c -g -O2 -I./src -DgFortran conftest.c >&5
configure:16247: $? = 0
configure:16248: Renaming C object file.
configure:16251: $? = 0
configure:16269: f77 -c -g -O2 conftest.f >&5
configure:16269: $? = 0
configure:16270: Renaming Fortran object file.
configure:16273: $? = 0
configure:16329: f77 -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o -lm >&5
configure:16329: $? = 0
configure:16329: ./conftest
configure:16329: $? = 0
configure:16363: result: yes
configure:16297: checking for DATA support
configure:16311: result:
configure:16463: checking if compiler needs -Werror to reject unknown flags
configure:16479: gcc -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -DgFortran conftest.c >&5
gcc: error: unrecognized command line option '-Wunknown-warning-option'
configure:16479: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| int foo(void);
| int
| main ()
| {
| foo()
| ;
| return 0;
| }
configure:16484: result: no
configure:16550: checking for the pthreads library -lpthreads
configure:16588: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lpthreads -lm >&5
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
configure:16588: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void *a) { a = 0; }
| static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th, 0, start_routine, 0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0) /* ; */
| ;
| return 0;
| }
configure:16597: result: no
configure:16495: checking whether pthreads work without any flags
configure:16588: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5
configure:16588: $? = 0
configure:16597: result: yes
configure:16616: checking for joinable pthread attribute
configure:16631: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5
configure:16631: $? = 0
configure:16637: result: PTHREAD_CREATE_JOINABLE
configure:16647: checking if more special flags are required for pthreads
configure:16662: result: no
configure:16668: checking for PTHREAD_PRIO_INHERIT
configure:16685: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5
configure:16685: $? = 0
configure:16694: result: yes
configure:17043: checking for szlib library
configure:17045: result: suppressed
configure:17211: checking hdf5.h usability
configure:17211: gcc -c -g -O2 -fopenmp -I/usr//include -DgFortran conftest.c >&5
conftest.c:86:10: fatal error: hdf5.h: No such file or directory
86 | #include <hdf5.h>
| ^~~~~~~~
compilation terminated.
configure:17211: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <hdf5.h>
configure:17211: result: no
configure:17211: checking hdf5.h presence
configure:17211: gcc -E -I/usr//include -DgFortran conftest.c
conftest.c:53:10: fatal error: hdf5.h: No such file or directory
53 | #include <hdf5.h>
| ^~~~~~~~
compilation terminated.
configure:17211: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| /* end confdefs.h. */
| #include <hdf5.h>
configure:17211: result: no
configure:17211: checking for hdf5.h
configure:17211: result: no
configure:17221: checking for library containing H5Fopen
configure:17252: gcc -o conftest -g -O2 -fopenmp -I/usr//include -DgFortran -L/usr//lib conftest.c -lm >&5
/usr/bin/ld: /tmp/ccmk7KOy.o: in function `main':
/mnt/d/HURS/cdo-1.9.9rc3/conftest.c:64: undefined reference to `H5Fopen'
collect2: error: ld returned 1 exit status
configure:17252: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17252: gcc -o conftest -g -O2 -fopenmp -I/usr//include -DgFortran -L/usr//lib conftest.c -lhdf5 -lm >&5
/usr/bin/ld: cannot find -lhdf5
collect2: error: ld returned 1 exit status
configure:17252: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.9rc3"
| #define PACKAGE_STRING "cdo 1.9.9rc3"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.9rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.9.9rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17269: result: no
configure:17278: error: Cannot link to hdf5!

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DCE_UUID_C_INCLUDE_set=
ac_cv_env_DCE_UUID_C_INCLUDE_value=
ac_cv_env_DCE_UUID_C_LIB_set=
ac_cv_env_DCE_UUID_C_LIB_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_OSSP_UUID_C_INCLUDE_set=
ac_cv_env_OSSP_UUID_C_INCLUDE_value=
ac_cv_env_OSSP_UUID_C_LIB_set=
ac_cv_env_OSSP_UUID_C_LIB_value=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_set=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_func_backtrace=yes
ac_cv_func_feenableexcept=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_execinfo_h=yes
ac_cv_header_fnmatch_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_hdf5_h=no
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_wordexp_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_member_fenv_t___control=no
ac_cv_member_fenv_t___mxcsr=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_ac_pt_BASH=/bin/bash
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/usr/bin/dd
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_F77=f77
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp=-fopenmp
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5Fopen=no
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
acx_cv_cf_flag='-DgFortran (probed)'
acx_cv_cfortran_works=yes
acx_cv_f77_cf_flag=-DgFortran
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_PTHREAD_PRIO_INHERIT=yes
ax_cv_cxx_compile_cxx11=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing aclocal-1.16'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing autoconf'
AUTOHEADER='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing autoheader'
AUTOMAKE='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing automake-1.16'
AWK='gawk'
BASH='/bin/bash'
BUILD_AVX2_TESTS_FALSE=''
BUILD_AVX2_TESTS_TRUE=''
BUILD_AVX_TESTS_FALSE=''
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE=''
BUILD_SSE42_TESTS_TRUE=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -fopenmp '
CLDFLAGS=''
CLIBS=''
CMOR_LIBS=''
CPP='gcc -E'
CPPFLAGS='-I/usr//include -DgFortran'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2 -fopenmp '
CYGPATH_W='echo'
DCE_UUIDROOT=''
DCE_UUID_C_INCLUDE=''
DCE_UUID_C_LIB=''
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECCODES_INCLUDE=''
ECCODES_LIBS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_APP_FALSE=''
ENABLE_CDI_APP_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX=''
ENABLE_DATA='true'
ENABLE_EXTRA=''
ENABLE_FORTRAN='true'
ENABLE_GRIB=''
ENABLE_GRIBAPI=''
ENABLE_HIRLAM_EXTENSIONS_FALSE=''
ENABLE_HIRLAM_EXTENSIONS_TRUE=''
ENABLE_IEG=''
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_NC2=''
ENABLE_NC4=''
ENABLE_NC4HDF5=''
ENABLE_NETCDF=''
ENABLE_SERVICE=''
ENABLE_THREADS='yes'
EXEEXT=''
F77='f77'
FFLAGS='-g -O2'
FGREP='/usr/bin/grep -F'
FORTRAN_WORKS='yes'
GREP='/usr/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HAVE_CXX11='1'
HAVE_LIBGRIB_API_FALSE=''
HAVE_LIBGRIB_API_TRUE=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT='/usr/'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/usr//lib '
LIBOBJS=''
LIBS=' -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=''
NETCDF_LIBS=''
NETCDF_ROOT=''
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OSSP_UUIDROOT=''
OSSP_UUID_C_INCLUDE=''
OSSP_UUID_C_LIB=''
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.9.9rc3'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.9.9rc3'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SYSTEM_TYPE='x86_64-pc-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USE_F77_FALSE='#'
USE_F77_TRUE=''
UTIL_LINUX_UUIDROOT=''
UTIL_LINUX_UUID_C_INCLUDE=''
UTIL_LINUX_UUID_C_LIB=''
UUID_C_INCLUDE=''
UUID_C_LIB=''
VERSION='1.9.9rc3'
XML2_LIBS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_F77='f77'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.9.9rc3"
#define PACKAGE_STRING "cdo 1.9.9rc3"
#define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
#define PACKAGE_URL ""
#define CDO "1.9.9rc3"
#define PACKAGE "cdo"
#define VERSION "1.9.9rc3"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define restrict __restrict
#define HAVE_CXX11 1
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_FNMATCH_H 1
#define HAVE_WORDEXP_H 1
#define HAVE_EXECINFO_H 1
#define HAVE_MALLINFO 1
#define HAVE_BACKTRACE 1
#define HAVE_GETRLIMIT 1
#define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
#define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0"
#define F77_VERSION "unknown"
#define SYSTEM_TYPE "x86_64-pc-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_FEENABLEEXCEPT 1
#define HAVE_FENV_T___MXCSR 1
#define HAVE_CF_INTERFACE 1
#define ENABLE_DATA 1
#define HAVE_PTHREAD_PRIO_INHERIT 1
#define HAVE_LIBPTHREAD 1

configure: exit 1
    (1-1/1)