This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.9rc3, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --enable-netcdf4 --enable-zlib --with-netcdf=/usr/ --with-hdf5=/usr/ ## --------- ## ## Platform. ## ## --------- ## hostname = DESKTOP-7ES6GS7 uname -m = x86_64 uname -r = 4.4.0-18362-Microsoft uname -s = Linux uname -v = #836-Microsoft Mon May 05 16:04:00 PST 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /snap/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2875: checking build system type configure:2889: result: x86_64-pc-linux-gnu configure:2909: checking host system type configure:2922: result: x86_64-pc-linux-gnu configure:2961: checking for a BSD-compatible install configure:3029: result: /usr/bin/install -c configure:3040: checking whether build environment is sane configure:3095: result: yes configure:3244: checking for a thread-safe mkdir -p configure:3283: result: /usr/bin/mkdir -p configure:3290: checking for gawk configure:3306: found /usr/bin/gawk configure:3317: result: gawk configure:3328: checking whether make sets $(MAKE) configure:3350: result: yes configure:3379: checking whether make supports nested variables configure:3396: result: yes configure:3525: checking whether to enable maintainer-specific portions of Makefiles configure:3534: result: no configure:3553: checking whether make supports the include directive configure:3568: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3571: $? = 0 configure:3590: result: yes (GNU style) configure:3660: checking for gcc configure:3676: found /usr/bin/gcc configure:3687: result: gcc configure:3916: checking for C compiler version configure:3925: gcc --version >&5 gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3936: $? = 0 configure:3925: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2) configure:3936: $? = 0 configure:3925: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3936: $? = 1 configure:3925: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:3936: $? = 1 configure:3956: checking whether the C compiler works configure:3978: gcc conftest.c >&5 configure:3982: $? = 0 configure:4030: result: yes configure:4033: checking for C compiler default output file name configure:4035: result: a.out configure:4041: checking for suffix of executables configure:4048: gcc -o conftest conftest.c >&5 configure:4052: $? = 0 configure:4074: result: configure:4096: checking whether we are cross compiling configure:4104: gcc -o conftest conftest.c >&5 configure:4108: $? = 0 configure:4115: ./conftest configure:4119: $? = 0 configure:4107: result: no configure:4112: checking for suffix of object files configure:4134: gcc -c conftest.c >&5 configure:4138: $? = 0 configure:4159: result: o configure:4163: checking whether we are using the GNU C compiler configure:4182: gcc -c conftest.c >&5 configure:4182: $? = 0 configure:4191: result: yes configure:4200: checking whether gcc accepts -g configure:4220: gcc -c -g conftest.c >&5 configure:4220: $? = 0 configure:4261: result: yes configure:4278: checking for gcc option to accept ISO C89 configure:4341: gcc -c -g -O2 conftest.c >&5 configure:4341: $? = 0 configure:4354: result: none needed configure:4379: checking whether gcc understands -c and -o together configure:4401: gcc -c conftest.c -o conftest2.o configure:4404: $? = 0 configure:4401: gcc -c conftest.c -o conftest2.o configure:4404: $? = 0 configure:4416: result: yes configure:4435: checking dependency style of gcc configure:4546: result: gcc3 configure:4611: checking for ar configure:4627: found /usr/bin/ar configure:4638: result: ar configure:4664: checking the archiver (ar) interface configure:4680: gcc -c -g -O2 conftest.c >&5 configure:4680: $? = 0 configure:4682: ar cru libconftest.a conftest.o >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:4685: $? = 0 configure:4684: result: ar configure:4705: setting up libtool configure:4753: checking how to print strings configure:4780: result: printf configure:4801: checking for a sed that does not truncate output configure:4865: result: /usr/bin/sed configure:4883: checking for grep that handles long lines and -e configure:4941: result: /usr/bin/grep configure:4946: checking for egrep configure:5008: result: /usr/bin/grep -E configure:5013: checking for fgrep configure:5075: result: /usr/bin/grep -F configure:5110: checking for ld used by gcc configure:5177: result: /usr/bin/ld configure:5184: checking if the linker (/usr/bin/ld) is GNU ld configure:5199: result: yes configure:5211: checking for BSD- or MS-compatible name lister (nm) configure:5265: result: /usr/bin/nm -B configure:5395: checking the name lister (/usr/bin/nm -B) interface configure:5402: gcc -c -g -O2 conftest.c >&5 configure:5405: /usr/bin/nm -B "conftest.o" configure:5408: output 0000000000000000 B some_variable configure:5409: result: BSD nm configure:5412: checking whether ln -s works configure:5416: result: yes configure:5424: checking the maximum length of command line arguments configure:5555: result: 1572864 configure:5603: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5643: result: func_convert_file_noop configure:5650: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5670: result: func_convert_file_noop configure:5677: checking for /usr/bin/ld option to reload object files configure:5684: result: -r configure:5758: checking for objdump configure:5774: found /usr/bin/objdump configure:5785: result: objdump configure:5817: checking how to recognize dependent libraries configure:6017: result: pass_all configure:6102: checking for dlltool configure:6132: result: no configure:6162: checking how to associate runtime and link libraries configure:6189: result: printf %s\n configure:6329: checking for archiver @FILE support configure:6346: gcc -c -g -O2 conftest.c >&5 configure:6346: $? = 0 configure:6349: ar cr libconftest.a @conftest.lst >&5 configure:6352: $? = 0 configure:6357: ar cr libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6360: $? = 1 configure:6359: result: @ configure:6417: checking for strip configure:6433: found /usr/bin/strip configure:6444: result: strip configure:6516: checking for ranlib configure:6532: found /usr/bin/ranlib configure:6543: result: ranlib configure:6645: checking command to parse /usr/bin/nm -B output from gcc object configure:6798: gcc -c -g -O2 conftest.c >&5 configure:6801: $? = 0 configure:6805: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6808: $? = 0 configure:6874: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:6877: $? = 0 configure:6915: result: ok configure:6962: checking for sysroot configure:6992: result: no configure:6999: checking for a working dd configure:7037: result: /usr/bin/dd configure:7041: checking how to truncate binary pipes configure:7056: result: /usr/bin/dd bs=4096 count=1 configure:7192: gcc -c -g -O2 conftest.c >&5 configure:7195: $? = 0 configure:7385: checking for mt configure:7401: found /usr/bin/mt configure:7412: result: mt configure:7435: checking if mt is a manifest tool configure:7441: mt '-?' configure:7449: result: no configure:8126: checking how to run the C preprocessor configure:8157: gcc -E conftest.c configure:8157: $? = 0 configure:8171: gcc -E conftest.c conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory 12 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:8171: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | /* end confdefs.h. */ | #include configure:8196: result: gcc -E configure:8216: gcc -E conftest.c configure:8216: $? = 0 configure:8230: gcc -E conftest.c conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory 12 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:8230: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | /* end confdefs.h. */ | #include configure:8259: checking for ANSI C header files configure:8279: gcc -c -g -O2 conftest.c >&5 configure:8279: $? = 0 configure:8352: gcc -o conftest -g -O2 conftest.c >&5 configure:8352: $? = 0 configure:8352: ./conftest configure:8352: $? = 0 configure:8363: result: yes configure:8376: checking for sys/types.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for sys/stat.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for stdlib.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for string.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for memory.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for strings.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for inttypes.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for stdint.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8376: checking for unistd.h configure:8376: gcc -c -g -O2 conftest.c >&5 configure:8376: $? = 0 configure:8376: result: yes configure:8390: checking for dlfcn.h configure:8390: gcc -c -g -O2 conftest.c >&5 configure:8390: $? = 0 configure:8390: result: yes configure:8646: checking for objdir configure:8661: result: .libs configure:8925: checking if gcc supports -fno-rtti -fno-exceptions configure:8943: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/D/ObjC++ but not for C configure:8947: $? = 0 configure:8960: result: no configure:9318: checking for gcc option to produce PIC configure:9325: result: -fPIC -DPIC configure:9333: checking if gcc PIC flag -fPIC -DPIC works configure:9351: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:9355: $? = 0 configure:9368: result: yes configure:9397: checking if gcc static flag -static works configure:9425: result: yes configure:9440: checking if gcc supports -c -o file.o configure:9461: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:9465: $? = 0 configure:9487: result: yes configure:9495: checking if gcc supports -c -o file.o configure:9542: result: yes configure:9575: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10836: result: yes configure:10873: checking whether -lc should be explicitly linked in configure:10881: gcc -c -g -O2 conftest.c >&5 configure:10884: $? = 0 configure:10899: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:10902: $? = 0 configure:10916: result: no configure:11076: checking dynamic linker characteristics configure:11657: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11657: $? = 0 configure:11894: result: GNU/Linux ld.so configure:12016: checking how to hardcode library paths into programs configure:12041: result: immediate configure:12589: checking whether stripping libraries is possible configure:12598: result: yes configure:12640: checking if libtool supports shared libraries configure:12642: result: yes configure:12645: checking whether to build shared libraries configure:12670: result: yes configure:12673: checking whether to build static libraries configure:12677: result: yes configure:9541: checking for bash configure:9571: result: /bin/bash configure:9638: checking for gcc configure:9665: result: gcc configure:9730: checking for g++ configure:9746: found /usr/bin/g++ configure:9757: result: g++ configure:9779: checking for gcc option to accept ISO C99 configure:9928: gcc -c -g -O2 conftest.c >&5 configure:9928: $? = 0 configure:9941: result: none needed configure:10069: checking for C++ compiler version configure:10078: g++ --version >&5 g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:10089: $? = 0 configure:10078: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2) configure:10089: $? = 0 configure:10078: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:10089: $? = 1 configure:10078: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:10089: $? = 1 configure:10093: checking whether we are using the GNU C++ compiler configure:10112: g++ -c conftest.cpp >&5 configure:10112: $? = 0 configure:10121: result: yes configure:10130: checking whether g++ accepts -g configure:10150: g++ -c -g conftest.cpp >&5 configure:10150: $? = 0 configure:10191: result: yes configure:10216: checking dependency style of g++ configure:10327: result: gcc3 configure:10360: checking how to run the C++ preprocessor configure:10387: g++ -E conftest.cpp configure:10387: $? = 0 configure:10401: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory 24 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:10401: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:10426: result: g++ -E configure:10446: g++ -E conftest.cpp configure:10446: $? = 0 configure:10460: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory 24 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:10460: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:10622: checking for ld used by g++ configure:10689: result: /usr/bin/ld -m elf_x86_64 configure:10696: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:10711: result: yes configure:10766: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11840: result: yes configure:11876: g++ -c -g -O2 conftest.cpp >&5 configure:11879: $? = 0 configure:12360: checking for g++ option to produce PIC configure:12367: result: -fPIC -DPIC configure:12375: checking if g++ PIC flag -fPIC -DPIC works configure:12393: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:12397: $? = 0 configure:12410: result: yes configure:12433: checking if g++ static flag -static works configure:12461: result: yes configure:12473: checking if g++ supports -c -o file.o configure:12494: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:12498: $? = 0 configure:12520: result: yes configure:12525: checking if g++ supports -c -o file.o configure:12572: result: yes configure:12602: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:12642: result: yes configure:12783: checking dynamic linker characteristics configure:13528: result: GNU/Linux ld.so configure:13593: checking how to hardcode library paths into programs configure:13618: result: immediate configure:12557: checking for g77 configure:12587: result: no configure:12557: checking for xlf configure:12587: result: no configure:12557: checking for f77 configure:12573: found /usr/bin/f77 configure:12584: result: f77 configure:12610: checking for Fortran 77 compiler version configure:12619: f77 --version >&5 GNU Fortran (Ubuntu 9.3.0-10ubuntu2) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12630: $? = 0 configure:12619: f77 -v >&5 Using built-in specs. COLLECT_GCC=f77 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-10ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2) configure:12630: $? = 0 configure:12619: f77 -V >&5 f77: error: unrecognized command line option '-V' f77: fatal error: no input files compilation terminated. configure:12630: $? = 1 configure:12619: f77 -qversion >&5 f77: error: unrecognized command line option '-qversion'; did you mean '--version'? f77: fatal error: no input files compilation terminated. configure:12630: $? = 1 configure:12639: checking whether we are using the GNU Fortran 77 compiler configure:12652: f77 -c conftest.F >&5 configure:12652: $? = 0 configure:12661: result: yes configure:12667: checking whether f77 accepts -g configure:12678: f77 -c -g conftest.f >&5 configure:12678: $? = 0 configure:12686: result: yes configure:12815: checking if libtool supports shared libraries configure:12817: result: yes configure:12820: checking whether to build shared libraries configure:12844: result: yes configure:12847: checking whether to build static libraries configure:12851: result: yes configure:13203: checking for f77 option to produce PIC configure:13210: result: -fPIC configure:13218: checking if f77 PIC flag -fPIC works configure:13236: f77 -c -g -O2 -fPIC conftest.f >&5 configure:13240: $? = 0 configure:13253: result: yes configure:13276: checking if f77 static flag -static works configure:13304: result: yes configure:13316: checking if f77 supports -c -o file.o configure:13337: f77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:13341: $? = 0 configure:13363: result: yes configure:13368: checking if f77 supports -c -o file.o configure:13415: result: yes configure:13445: checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14656: result: yes configure:14797: checking dynamic linker characteristics configure:15536: result: GNU/Linux ld.so configure:15601: checking how to hardcode library paths into programs configure:15626: result: immediate configure:13347: checking for C/C++ restrict keyword configure:13372: gcc -c -g -O2 conftest.c >&5 configure:13372: $? = 0 configure:13380: result: __restrict configure:13400: checking whether g++ supports C++11 features by default configure:13694: g++ -c -g -O2 conftest.cpp >&5 configure:13694: $? = 0 configure:13701: result: yes configure:14386: checking for gcc option to support OpenMP configure:14401: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' 28 | choke me | ^~~~~ conftest.c:28:10: error: expected ';' before 'typedef' 28 | choke me | ^ | ; configure:14401: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:14419: gcc -o conftest -g -O2 -fopenmp conftest.c >&5 configure:14419: $? = 0 configure:14433: result: -fopenmp configure:14487: checking for ar configure:14514: result: ar configure:14671: checking for ld configure:14698: result: /usr/bin/ld -m elf_x86_64 configure:14763: checking for nm configure:14790: result: /usr/bin/nm -B configure:14855: checking for ar configure:14882: result: ar configure:14947: checking for as configure:14963: found /usr/bin/as configure:14974: result: as configure:15039: checking for dlltool configure:15066: result: false configure:15131: checking for objdump configure:15158: result: objdump configure:15223: checking for strip configure:15250: result: strip configure:15315: checking for ranlib configure:15342: result: ranlib configure:15378: checking for special C compiler options needed for large files configure:15423: result: no configure:15429: checking for _FILE_OFFSET_BITS value needed for large files configure:15454: gcc -c -g -O2 conftest.c >&5 configure:15454: $? = 0 configure:15486: result: no configure:15579: checking for stdlib.h configure:15579: result: yes configure:15579: checking for unistd.h configure:15579: result: yes configure:15579: checking for sys/param.h configure:15579: gcc -c -g -O2 conftest.c >&5 configure:15579: $? = 0 configure:15579: result: yes configure:15599: checking for getpagesize configure:15599: gcc -o conftest -g -O2 conftest.c >&5 configure:15599: $? = 0 configure:15599: result: yes configure:15608: checking for working mmap configure:15755: gcc -o conftest -g -O2 conftest.c >&5 configure:15755: $? = 0 configure:15755: ./conftest configure:15755: $? = 0 configure:15765: result: yes configure:15776: checking for struct stat.st_blksize configure:15776: gcc -c -g -O2 conftest.c >&5 configure:15776: $? = 0 configure:15776: result: yes configure:15790: checking sys/resource.h usability configure:15790: gcc -c -g -O2 conftest.c >&5 configure:15790: $? = 0 configure:15790: result: yes configure:15790: checking sys/resource.h presence configure:15790: gcc -E conftest.c configure:15790: $? = 0 configure:15790: result: yes configure:15790: checking for sys/resource.h configure:15790: result: yes configure:15802: checking sys/times.h usability configure:15802: gcc -c -g -O2 conftest.c >&5 configure:15802: $? = 0 configure:15802: result: yes configure:15802: checking sys/times.h presence configure:15802: gcc -E conftest.c configure:15802: $? = 0 configure:15802: result: yes configure:15802: checking for sys/times.h configure:15802: result: yes configure:15814: checking malloc.h usability configure:15814: gcc -c -g -O2 conftest.c >&5 configure:15814: $? = 0 configure:15814: result: yes configure:15814: checking malloc.h presence configure:15814: gcc -E conftest.c configure:15814: $? = 0 configure:15814: result: yes configure:15814: checking for malloc.h configure:15814: result: yes configure:15826: checking glob.h usability configure:15826: gcc -c -g -O2 conftest.c >&5 configure:15826: $? = 0 configure:15826: result: yes configure:15826: checking glob.h presence configure:15826: gcc -E conftest.c configure:15826: $? = 0 configure:15826: result: yes configure:15826: checking for glob.h configure:15826: result: yes configure:15838: checking fnmatch.h usability configure:15838: gcc -c -g -O2 conftest.c >&5 configure:15838: $? = 0 configure:15838: result: yes configure:15838: checking fnmatch.h presence configure:15838: gcc -E conftest.c configure:15838: $? = 0 configure:15838: result: yes configure:15838: checking for fnmatch.h configure:15838: result: yes configure:15850: checking wordexp.h usability configure:15850: gcc -c -g -O2 conftest.c >&5 configure:15850: $? = 0 configure:15850: result: yes configure:15850: checking wordexp.h presence configure:15850: gcc -E conftest.c configure:15850: $? = 0 configure:15850: result: yes configure:15850: checking for wordexp.h configure:15850: result: yes configure:15862: checking execinfo.h usability configure:15862: gcc -c -g -O2 conftest.c >&5 configure:15862: $? = 0 configure:15862: result: yes configure:15862: checking execinfo.h presence configure:15862: gcc -E conftest.c configure:15862: $? = 0 configure:15862: result: yes configure:15862: checking for execinfo.h configure:15862: result: yes configure:15876: checking for mallinfo configure:15876: gcc -o conftest -g -O2 conftest.c >&5 configure:15876: $? = 0 configure:15876: result: yes configure:15887: checking for backtrace configure:15887: gcc -o conftest -g -O2 conftest.c >&5 configure:15887: $? = 0 configure:15887: result: yes configure:15900: checking for getrlimit configure:15900: gcc -o conftest -g -O2 conftest.c >&5 configure:15900: $? = 0 configure:15900: result: yes configure:15975: checking for floor in -lm configure:16000: gcc -o conftest -g -O2 conftest.c -lm >&5 conftest.c:53:6: warning: conflicting types for built-in function 'floor'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 53 | char floor (); | ^~~~~ conftest.c:1:1: note: 'floor' is declared in header '' 1 | /* confdefs.h */ configure:16000: $? = 0 configure:16009: result: yes configure:16023: checking for feenableexcept configure:16023: gcc -o conftest -g -O2 conftest.c -lm >&5 configure:16023: $? = 0 configure:16023: result: yes configure:16033: checking for fenv_t.__control configure:16033: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:13: error: 'fenv_t' {aka 'struct '} has no member named '__control'; did you mean '__control_word'? 54 | if (ac_aggr.__control) | ^~~~~~~~~ | __control_word configure:16033: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:16033: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:20: error: 'fenv_t' {aka 'struct '} has no member named '__control'; did you mean '__control_word'? 54 | if (sizeof ac_aggr.__control) | ^~~~~~~~~ | __control_word configure:16033: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:16033: result: no configure:16043: checking for fenv_t.__mxcsr configure:16043: gcc -c -g -O2 conftest.c >&5 configure:16043: $? = 0 configure:16043: result: yes configure:16066: checking C preprocessor flags for Fortran calling convention cfortran.h configure:16152: result: -DgFortran (probed) configure:16187: checking if C externals constructed with cfortran.h work configure:16247: gcc -c -g -O2 -I./src -DgFortran conftest.c >&5 configure:16247: $? = 0 configure:16248: Renaming C object file. configure:16251: $? = 0 configure:16269: f77 -c -g -O2 conftest.f >&5 configure:16269: $? = 0 configure:16270: Renaming Fortran object file. configure:16273: $? = 0 configure:16329: f77 -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o -lm >&5 configure:16329: $? = 0 configure:16329: ./conftest configure:16329: $? = 0 configure:16363: result: yes configure:16297: checking for DATA support configure:16311: result: configure:16463: checking if compiler needs -Werror to reject unknown flags configure:16479: gcc -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -DgFortran conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' configure:16479: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:16484: result: no configure:16550: checking for the pthreads library -lpthreads configure:16588: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:16588: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:16597: result: no configure:16495: checking whether pthreads work without any flags configure:16588: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5 configure:16588: $? = 0 configure:16597: result: yes configure:16616: checking for joinable pthread attribute configure:16631: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5 configure:16631: $? = 0 configure:16637: result: PTHREAD_CREATE_JOINABLE configure:16647: checking if more special flags are required for pthreads configure:16662: result: no configure:16668: checking for PTHREAD_PRIO_INHERIT configure:16685: gcc -o conftest -g -O2 -fopenmp -DgFortran conftest.c -lm >&5 configure:16685: $? = 0 configure:16694: result: yes configure:17043: checking for szlib library configure:17045: result: suppressed configure:17211: checking hdf5.h usability configure:17211: gcc -c -g -O2 -fopenmp -I/usr//include -DgFortran conftest.c >&5 conftest.c:86:10: fatal error: hdf5.h: No such file or directory 86 | #include | ^~~~~~~~ compilation terminated. configure:17211: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:17211: result: no configure:17211: checking hdf5.h presence configure:17211: gcc -E -I/usr//include -DgFortran conftest.c conftest.c:53:10: fatal error: hdf5.h: No such file or directory 53 | #include | ^~~~~~~~ compilation terminated. configure:17211: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | #include configure:17211: result: no configure:17211: checking for hdf5.h configure:17211: result: no configure:17221: checking for library containing H5Fopen configure:17252: gcc -o conftest -g -O2 -fopenmp -I/usr//include -DgFortran -L/usr//lib conftest.c -lm >&5 /usr/bin/ld: /tmp/ccmk7KOy.o: in function `main': /mnt/d/HURS/cdo-1.9.9rc3/conftest.c:64: undefined reference to `H5Fopen' collect2: error: ld returned 1 exit status configure:17252: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:17252: gcc -o conftest -g -O2 -fopenmp -I/usr//include -DgFortran -L/usr//lib conftest.c -lhdf5 -lm >&5 /usr/bin/ld: cannot find -lhdf5 collect2: error: ld returned 1 exit status configure:17252: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.9rc3" | #define PACKAGE_STRING "cdo 1.9.9rc3" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.9rc3" | #define PACKAGE "cdo" | #define VERSION "1.9.9rc3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:17269: result: no configure:17278: error: Cannot link to hdf5! ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_hdf5_h=no ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_m_floor=yes ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/bash ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_F77=f77 ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_MANIFEST_TOOL=mt ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5Fopen=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_cf_flag='-DgFortran (probed)' acx_cv_cfortran_works=yes acx_cv_f77_cf_flag=-DgFortran am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_cxx_compile_cxx11=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing autoconf' AUTOHEADER='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing autoheader' AUTOMAKE='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing automake-1.16' AWK='gawk' BASH='/bin/bash' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='' BUILD_SSE42_TESTS_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/usr//include -DgFortran' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp ' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_APP_FALSE='' ENABLE_CDI_APP_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_DATA='true' ENABLE_EXTRA='' ENABLE_FORTRAN='true' ENABLE_GRIB='' ENABLE_GRIBAPI='' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='' ENABLE_NC4='' ENABLE_NC4HDF5='' ENABLE_NETCDF='' ENABLE_SERVICE='' ENABLE_THREADS='yes' EXEEXT='' F77='f77' FFLAGS='-g -O2' FGREP='/usr/bin/grep -F' FORTRAN_WORKS='yes' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_CXX11='1' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='' HDF5_INCLUDE='' HDF5_LIBS='' HDF5_ROOT='/usr/' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usr//lib ' LIBOBJS='' LIBS=' -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE='' NETCDF_LIBS='' NETCDF_ROOT='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.9rc3' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.9rc3' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' SYSTEM_TYPE='x86_64-pc-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='' UUID_C_INCLUDE='' UUID_C_LIB='' VERSION='1.9.9rc3' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='f77' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /mnt/d/HURS/cdo-1.9.9rc3/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.9.9rc3" #define PACKAGE_STRING "cdo 1.9.9rc3" #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.9.9rc3" #define PACKAGE "cdo" #define VERSION "1.9.9rc3" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_CXX11 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_MALLINFO 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define CXX_VERSION "g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0" #define C_VERSION "gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0" #define F77_VERSION "unknown" #define SYSTEM_TYPE "x86_64-pc-linux-gnu" #define HAVE_LIBM 1 #define HAVE_FEENABLEEXCEPT 1 #define HAVE_FENV_T___MXCSR 1 #define HAVE_CF_INTERFACE 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 configure: exit 1