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Intallation of CDO 1.9.8 does not work » config.log

Config.log - Herman Caron, 2019-11-25 11:35

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.8, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure prefix=/usr/local/mypackages/cdo-1.9.8/build CFLAGS=-fPIC --with-netcdf=/usr/local/mypackages/netcdf-c-4.7.2 --with-eccodes=/tmp/build_eccodes.2.14.1

## --------- ##
## Platform. ##
## --------- ##

hostname = Laptop-h-lastname
uname -m = x86_64
uname -r = 4.4.0-18362-Microsoft
uname -s = Linux
uname -v = #476-Microsoft Fri Nov 01 16:53:00 PST 2019

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /snap/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2879: checking build system type
configure:2893: result: x86_64-pc-linux-gnu
configure:2913: checking host system type
configure:2926: result: x86_64-pc-linux-gnu
configure:2965: checking for a BSD-compatible install
configure:3033: result: /usr/bin/install -c
configure:3044: checking whether build environment is sane
configure:3099: result: yes
configure:3250: checking for a thread-safe mkdir -p
configure:3289: result: /bin/mkdir -p
configure:3296: checking for gawk
configure:3312: found /usr/bin/gawk
configure:3323: result: gawk
configure:3334: checking whether make sets $(MAKE)
configure:3356: result: yes
configure:3385: checking whether make supports nested variables
configure:3402: result: yes
configure:3531: checking whether to enable maintainer-specific portions of Makefiles
configure:3540: result: no
configure:3559: checking whether make supports the include directive
configure:3574: make -f confmf.GNU && cat confinc.out
this is the am__doit target
configure:3577: $? = 0
configure:3596: result: yes (GNU style)
configure:3666: checking for gcc
configure:3682: found /usr/bin/gcc
configure:3693: result: gcc
configure:3922: checking for C compiler version
configure:3931: gcc --version >&5
gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3942: $? = 0
configure:3931: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)
configure:3942: $? = 0
configure:3931: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3942: $? = 1
configure:3931: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3942: $? = 1
configure:3962: checking whether the C compiler works
configure:3984: gcc -fPIC conftest.c >&5
configure:3988: $? = 0
configure:4036: result: yes
configure:4039: checking for C compiler default output file name
configure:4041: result: a.out
configure:4047: checking for suffix of executables
configure:4054: gcc -o conftest -fPIC conftest.c >&5
configure:4058: $? = 0
configure:4080: result:
configure:4102: checking whether we are cross compiling
configure:4110: gcc -o conftest -fPIC conftest.c >&5
configure:4114: $? = 0
configure:4121: ./conftest
configure:4125: $? = 0
configure:4140: result: no
configure:4145: checking for suffix of object files
configure:4167: gcc -c -fPIC conftest.c >&5
configure:4171: $? = 0
configure:4192: result: o
configure:4196: checking whether we are using the GNU C compiler
configure:4215: gcc -c -fPIC conftest.c >&5
configure:4215: $? = 0
configure:4224: result: yes
configure:4233: checking whether gcc accepts -g
configure:4253: gcc -c -g conftest.c >&5
configure:4253: $? = 0
configure:4294: result: yes
configure:4311: checking for gcc option to accept ISO C89
configure:4374: gcc -c -fPIC conftest.c >&5
configure:4374: $? = 0
configure:4387: result: none needed
configure:4412: checking whether gcc understands -c and -o together
configure:4434: gcc -c conftest.c -o conftest2.o
configure:4437: $? = 0
configure:4434: gcc -c conftest.c -o conftest2.o
configure:4437: $? = 0
configure:4449: result: yes
configure:4468: checking dependency style of gcc
configure:4579: result: gcc3
configure:4644: checking for ar
configure:4660: found /usr/bin/ar
configure:4671: result: ar
configure:4697: checking the archiver (ar) interface
configure:4713: gcc -c -fPIC conftest.c >&5
configure:4713: $? = 0
configure:4715: ar cru libconftest.a conftest.o >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:4718: $? = 0
configure:4746: result: ar
configure:4767: setting up libtool
configure:4815: checking how to print strings
configure:4842: result: printf
configure:4863: checking for a sed that does not truncate output
configure:4927: result: /bin/sed
configure:4945: checking for grep that handles long lines and -e
configure:5003: result: /bin/grep
configure:5008: checking for egrep
configure:5070: result: /bin/grep -E
configure:5075: checking for fgrep
configure:5137: result: /bin/grep -F
configure:5172: checking for ld used by gcc
configure:5239: result: /usr/bin/ld
configure:5246: checking if the linker (/usr/bin/ld) is GNU ld
configure:5261: result: yes
configure:5273: checking for BSD- or MS-compatible name lister (nm)
configure:5327: result: /usr/bin/nm -B
configure:5457: checking the name lister (/usr/bin/nm -B) interface
configure:5464: gcc -c -fPIC conftest.c >&5
configure:5467: /usr/bin/nm -B "conftest.o"
configure:5470: output
0000000000000000 B some_variable
configure:5477: result: BSD nm
configure:5480: checking whether ln -s works
configure:5484: result: yes
configure:5492: checking the maximum length of command line arguments
configure:5623: result: 1572864
configure:5671: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5711: result: func_convert_file_noop
configure:5718: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5738: result: func_convert_file_noop
configure:5745: checking for /usr/bin/ld option to reload object files
configure:5752: result: -r
configure:5826: checking for objdump
configure:5842: found /usr/bin/objdump
configure:5853: result: objdump
configure:5885: checking how to recognize dependent libraries
configure:6085: result: pass_all
configure:6170: checking for dlltool
configure:6200: result: no
configure:6230: checking how to associate runtime and link libraries
configure:6257: result: printf %s\n
configure:6381: checking for archiver @FILE support
configure:6398: gcc -c -fPIC conftest.c >&5
configure:6398: $? = 0
configure:6401: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:6404: $? = 0
configure:6409: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
ar: conftest.o: No such file or directory
configure:6412: $? = 1
configure:6424: result: @
configure:6482: checking for strip
configure:6498: found /usr/bin/strip
configure:6509: result: strip
configure:6581: checking for ranlib
configure:6597: found /usr/bin/ranlib
configure:6608: result: ranlib
configure:6710: checking command to parse /usr/bin/nm -B output from gcc object
configure:6863: gcc -c -fPIC conftest.c >&5
configure:6866: $? = 0
configure:6870: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6873: $? = 0
configure:6939: gcc -o conftest -fPIC conftest.c conftstm.o >&5
configure:6942: $? = 0
configure:6980: result: ok
configure:7027: checking for sysroot
configure:7057: result: no
configure:7064: checking for a working dd
configure:7102: result: /bin/dd
configure:7106: checking how to truncate binary pipes
configure:7121: result: /bin/dd bs=4096 count=1
configure:7257: gcc -c -fPIC conftest.c >&5
configure:7260: $? = 0
configure:7450: checking for mt
configure:7466: found /bin/mt
configure:7477: result: mt
configure:7500: checking if mt is a manifest tool
configure:7506: mt '-?'
configure:7514: result: no
configure:8191: checking how to run the C preprocessor
configure:8222: gcc -E conftest.c
configure:8222: $? = 0
configure:8236: gcc -E conftest.c
conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8236: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8261: result: gcc -E
configure:8281: gcc -E conftest.c
configure:8281: $? = 0
configure:8295: gcc -E conftest.c
conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8295: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8324: checking for ANSI C header files
configure:8344: gcc -c -fPIC conftest.c >&5
configure:8344: $? = 0
configure:8417: gcc -o conftest -fPIC conftest.c >&5
configure:8417: $? = 0
configure:8417: ./conftest
configure:8417: $? = 0
configure:8428: result: yes
configure:8441: checking for sys/types.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for sys/stat.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for stdlib.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for string.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for memory.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for strings.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for inttypes.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for stdint.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8441: checking for unistd.h
configure:8441: gcc -c -fPIC conftest.c >&5
configure:8441: $? = 0
configure:8441: result: yes
configure:8455: checking for dlfcn.h
configure:8455: gcc -c -fPIC conftest.c >&5
configure:8455: $? = 0
configure:8455: result: yes
configure:8711: checking for objdir
configure:8726: result: .libs
configure:8990: checking if gcc supports -fno-rtti -fno-exceptions
configure:9008: gcc -c -fPIC -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:9012: $? = 0
configure:9025: result: no
configure:9383: checking for gcc option to produce PIC
configure:9390: result: -fPIC -DPIC
configure:9398: checking if gcc PIC flag -fPIC -DPIC works
configure:9416: gcc -c -fPIC -fPIC -DPIC -DPIC conftest.c >&5
configure:9420: $? = 0
configure:9433: result: yes
configure:9462: checking if gcc static flag -static works
configure:9490: result: yes
configure:9505: checking if gcc supports -c -o file.o
configure:9526: gcc -c -fPIC -o out/conftest2.o conftest.c >&5
configure:9530: $? = 0
configure:9552: result: yes
configure:9560: checking if gcc supports -c -o file.o
configure:9607: result: yes
configure:9640: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10899: result: yes
configure:10936: checking whether -lc should be explicitly linked in
configure:10944: gcc -c -fPIC conftest.c >&5
configure:10947: $? = 0
configure:10962: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10965: $? = 0
configure:10979: result: no
configure:11139: checking dynamic linker characteristics
configure:11720: gcc -o conftest -fPIC -Wl,-rpath -Wl,/foo conftest.c >&5
configure:11720: $? = 0
configure:11957: result: GNU/Linux ld.so
configure:12079: checking how to hardcode library paths into programs
configure:12104: result: immediate
configure:12652: checking whether stripping libraries is possible
configure:12657: result: yes
configure:12692: checking if libtool supports shared libraries
configure:12694: result: yes
configure:12697: checking whether to build shared libraries
configure:12722: result: yes
configure:12725: checking whether to build static libraries
configure:12729: result: yes
configure:12814: checking for bash
configure:12844: result: /bin/bash
configure:12911: checking for gcc
configure:12938: result: gcc
configure:13003: checking for g++
configure:13019: found /usr/bin/g++
configure:13030: result: g++
configure:13052: checking for gcc option to accept ISO C99
configure:13201: gcc -c -fPIC conftest.c >&5
configure:13201: $? = 0
configure:13214: result: none needed
configure:13342: checking for C++ compiler version
configure:13351: g++ --version >&5
g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13362: $? = 0
configure:13351: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)
configure:13362: $? = 0
configure:13351: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:13362: $? = 1
configure:13351: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:13362: $? = 1
configure:13366: checking whether we are using the GNU C++ compiler
configure:13385: g++ -c conftest.cpp >&5
configure:13385: $? = 0
configure:13394: result: yes
configure:13403: checking whether g++ accepts -g
configure:13423: g++ -c -g conftest.cpp >&5
configure:13423: $? = 0
configure:13464: result: yes
configure:13489: checking dependency style of g++
configure:13600: result: gcc3
configure:13633: checking how to run the C++ preprocessor
configure:13660: g++ -E conftest.cpp
configure:13660: $? = 0
configure:13674: g++ -E conftest.cpp
conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:13674: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13699: result: g++ -E
configure:13719: g++ -E conftest.cpp
configure:13719: $? = 0
configure:13733: g++ -E conftest.cpp
conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:13733: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13895: checking for ld used by g++
configure:13962: result: /usr/bin/ld -m elf_x86_64
configure:13969: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13984: result: yes
configure:14039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15112: result: yes
configure:15148: g++ -c -g -O2 conftest.cpp >&5
configure:15151: $? = 0
configure:15632: checking for g++ option to produce PIC
configure:15639: result: -fPIC -DPIC
configure:15647: checking if g++ PIC flag -fPIC -DPIC works
configure:15665: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15669: $? = 0
configure:15682: result: yes
configure:15705: checking if g++ static flag -static works
configure:15733: result: yes
configure:15745: checking if g++ supports -c -o file.o
configure:15766: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:15770: $? = 0
configure:15792: result: yes
configure:15797: checking if g++ supports -c -o file.o
configure:15844: result: yes
configure:15874: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15914: result: yes
configure:16055: checking dynamic linker characteristics
configure:16800: result: GNU/Linux ld.so
configure:16865: checking how to hardcode library paths into programs
configure:16890: result: immediate
configure:16983: checking for g77
configure:17013: result: no
configure:16983: checking for xlf
configure:17013: result: no
configure:16983: checking for f77
configure:16999: found /usr/bin/f77
configure:17010: result: f77
configure:17036: checking for Fortran 77 compiler version
configure:17045: f77 --version >&5
GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:17056: $? = 0
configure:17045: f77 -v >&5
Using built-in specs.
COLLECT_GCC=f77
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)
configure:17056: $? = 0
configure:17045: f77 -V >&5
f77: error: unrecognized command line option '-V'
f77: fatal error: no input files
compilation terminated.
configure:17056: $? = 1
configure:17045: f77 -qversion >&5
f77: error: unrecognized command line option '-qversion'; did you mean '--version'?
f77: fatal error: no input files
compilation terminated.
configure:17056: $? = 1
configure:17065: checking whether we are using the GNU Fortran 77 compiler
configure:17078: f77 -c conftest.F >&5
configure:17078: $? = 0
configure:17087: result: yes
configure:17093: checking whether f77 accepts -g
configure:17104: f77 -c -g conftest.f >&5
configure:17104: $? = 0
configure:17112: result: yes
configure:17241: checking if libtool supports shared libraries
configure:17243: result: yes
configure:17246: checking whether to build shared libraries
configure:17270: result: yes
configure:17273: checking whether to build static libraries
configure:17277: result: yes
configure:17629: checking for f77 option to produce PIC
configure:17636: result: -fPIC
configure:17644: checking if f77 PIC flag -fPIC works
configure:17662: f77 -c -g -O2 -fPIC conftest.f >&5
configure:17666: $? = 0
configure:17679: result: yes
configure:17702: checking if f77 static flag -static works
configure:17730: result: yes
configure:17742: checking if f77 supports -c -o file.o
configure:17763: f77 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:17767: $? = 0
configure:17789: result: yes
configure:17794: checking if f77 supports -c -o file.o
configure:17841: result: yes
configure:17871: checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:19080: result: yes
configure:19221: checking dynamic linker characteristics
configure:19960: result: GNU/Linux ld.so
configure:20025: checking how to hardcode library paths into programs
configure:20050: result: immediate
configure:20083: checking for C/C++ restrict keyword
configure:20108: gcc -c -fPIC conftest.c >&5
configure:20108: $? = 0
configure:20116: result: __restrict
configure:20136: checking whether g++ supports C++11 features by default
configure:20430: g++ -c -g -O2 conftest.cpp >&5
configure:20430: $? = 0
configure:20437: result: yes
configure:21122: checking for gcc option to support OpenMP
configure:21137: gcc -o conftest -fPIC conftest.c >&5
conftest.c:28:2: error: unknown type name 'choke'
choke me
^~~~~
In file included from conftest.c:30:0:
/usr/lib/gcc/x86_64-linux-gnu/7/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'
typedef struct
^~~~~~~
configure:21137: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| /* end confdefs.h. */
|
| #ifndef _OPENMP
| choke me
| #endif
| #include <omp.h>
| int main () { return omp_get_num_threads (); }
|
configure:21155: gcc -o conftest -fPIC -fopenmp conftest.c >&5
configure:21155: $? = 0
configure:21169: result: -fopenmp
configure:21223: checking for ar
configure:21250: result: ar
configure:21407: checking for ld
configure:21434: result: /usr/bin/ld -m elf_x86_64
configure:21499: checking for nm
configure:21526: result: /usr/bin/nm -B
configure:21591: checking for ar
configure:21618: result: ar
configure:21683: checking for as
configure:21699: found /usr/bin/as
configure:21710: result: as
configure:21775: checking for dlltool
configure:21802: result: false
configure:21867: checking for objdump
configure:21894: result: objdump
configure:21959: checking for strip
configure:21986: result: strip
configure:22051: checking for ranlib
configure:22078: result: ranlib
configure:22114: checking for special C compiler options needed for large files
configure:22159: result: no
configure:22165: checking for _FILE_OFFSET_BITS value needed for large files
configure:22190: gcc -c -fPIC conftest.c >&5
configure:22190: $? = 0
configure:22222: result: no
configure:22315: checking for stdlib.h
configure:22315: result: yes
configure:22315: checking for unistd.h
configure:22315: result: yes
configure:22315: checking for sys/param.h
configure:22315: gcc -c -fPIC conftest.c >&5
configure:22315: $? = 0
configure:22315: result: yes
configure:22335: checking for getpagesize
configure:22335: gcc -o conftest -fPIC conftest.c >&5
configure:22335: $? = 0
configure:22335: result: yes
configure:22344: checking for working mmap
configure:22491: gcc -o conftest -fPIC conftest.c >&5
configure:22491: $? = 0
configure:22491: ./conftest
configure:22491: $? = 0
configure:22501: result: yes
configure:22512: checking for struct stat.st_blksize
configure:22512: gcc -c -fPIC conftest.c >&5
configure:22512: $? = 0
configure:22512: result: yes
configure:22526: checking sys/resource.h usability
configure:22526: gcc -c -fPIC conftest.c >&5
configure:22526: $? = 0
configure:22526: result: yes
configure:22526: checking sys/resource.h presence
configure:22526: gcc -E conftest.c
configure:22526: $? = 0
configure:22526: result: yes
configure:22526: checking for sys/resource.h
configure:22526: result: yes
configure:22538: checking sys/times.h usability
configure:22538: gcc -c -fPIC conftest.c >&5
configure:22538: $? = 0
configure:22538: result: yes
configure:22538: checking sys/times.h presence
configure:22538: gcc -E conftest.c
configure:22538: $? = 0
configure:22538: result: yes
configure:22538: checking for sys/times.h
configure:22538: result: yes
configure:22550: checking malloc.h usability
configure:22550: gcc -c -fPIC conftest.c >&5
configure:22550: $? = 0
configure:22550: result: yes
configure:22550: checking malloc.h presence
configure:22550: gcc -E conftest.c
configure:22550: $? = 0
configure:22550: result: yes
configure:22550: checking for malloc.h
configure:22550: result: yes
configure:22562: checking glob.h usability
configure:22562: gcc -c -fPIC conftest.c >&5
configure:22562: $? = 0
configure:22562: result: yes
configure:22562: checking glob.h presence
configure:22562: gcc -E conftest.c
configure:22562: $? = 0
configure:22562: result: yes
configure:22562: checking for glob.h
configure:22562: result: yes
configure:22574: checking fnmatch.h usability
configure:22574: gcc -c -fPIC conftest.c >&5
configure:22574: $? = 0
configure:22574: result: yes
configure:22574: checking fnmatch.h presence
configure:22574: gcc -E conftest.c
configure:22574: $? = 0
configure:22574: result: yes
configure:22574: checking for fnmatch.h
configure:22574: result: yes
configure:22586: checking wordexp.h usability
configure:22586: gcc -c -fPIC conftest.c >&5
configure:22586: $? = 0
configure:22586: result: yes
configure:22586: checking wordexp.h presence
configure:22586: gcc -E conftest.c
configure:22586: $? = 0
configure:22586: result: yes
configure:22586: checking for wordexp.h
configure:22586: result: yes
configure:22598: checking execinfo.h usability
configure:22598: gcc -c -fPIC conftest.c >&5
configure:22598: $? = 0
configure:22598: result: yes
configure:22598: checking execinfo.h presence
configure:22598: gcc -E conftest.c
configure:22598: $? = 0
configure:22598: result: yes
configure:22598: checking for execinfo.h
configure:22598: result: yes
configure:22612: checking for mallinfo
configure:22612: gcc -o conftest -fPIC conftest.c >&5
configure:22612: $? = 0
configure:22612: result: yes
configure:22623: checking for backtrace
configure:22623: gcc -o conftest -fPIC conftest.c >&5
configure:22623: $? = 0
configure:22623: result: yes
configure:22636: checking for getrlimit
configure:22636: gcc -o conftest -fPIC conftest.c >&5
configure:22636: $? = 0
configure:22636: result: yes
configure:22711: checking for floor in -lm
configure:22736: gcc -o conftest -fPIC conftest.c -lm >&5
conftest.c:53:6: warning: conflicting types for built-in function 'floor' [-Wbuiltin-declaration-mismatch]
char floor ();
^~~~~
configure:22736: $? = 0
configure:22745: result: yes
configure:22759: checking for feenableexcept
configure:22759: gcc -o conftest -fPIC conftest.c -lm >&5
configure:22759: $? = 0
configure:22759: result: yes
configure:22769: checking for fenv_t.__control
configure:22769: gcc -c -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:54:13: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?
if (ac_aggr.__control)
^~~~~~~~~
__control_word
configure:22769: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:22769: gcc -c -fPIC conftest.c >&5
conftest.c: In function 'main':
conftest.c:54:20: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?
if (sizeof ac_aggr.__control)
^~~~~~~~~
__control_word
configure:22769: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (sizeof ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:22769: result: no
configure:22779: checking for fenv_t.__mxcsr
configure:22779: gcc -c -fPIC conftest.c >&5
configure:22779: $? = 0
configure:22779: result: yes
configure:22802: checking C preprocessor flags for Fortran calling convention cfortran.h
configure:22888: result: -DgFortran (probed)
configure:22923: checking if C externals constructed with cfortran.h work
configure:22983: gcc -c -fPIC -I./src -DgFortran conftest.c >&5
configure:22983: $? = 0
configure:22984: Renaming C object file.
configure:22987: $? = 0
configure:23005: f77 -c -g -O2 conftest.f >&5
configure:23005: $? = 0
configure:23006: Renaming Fortran object file.
configure:23009: $? = 0
configure:23065: f77 -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o -lm >&5
configure:23065: $? = 0
configure:23065: ./conftest
configure:23065: $? = 0
configure:23099: result: yes
configure:23153: checking for DATA support
configure:23167: result:
configure:23319: checking if compiler needs -Werror to reject unknown flags
configure:23335: gcc -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -DgFortran conftest.c >&5
gcc: error: unrecognized command line option '-Wunknown-warning-option'
configure:23335: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| int foo(void);
| int
| main ()
| {
| foo()
| ;
| return 0;
| }
configure:23340: result: no
configure:23406: checking for the pthreads library -lpthreads
configure:23444: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lpthreads -lm >&5
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
configure:23444: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void *a) { a = 0; }
| static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th, 0, start_routine, 0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0) /* ; */
| ;
| return 0;
| }
configure:23453: result: no
configure:23351: checking whether pthreads work without any flags
configure:23444: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5
configure:23444: $? = 0
configure:23453: result: yes
configure:23472: checking for joinable pthread attribute
configure:23487: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5
configure:23487: $? = 0
configure:23493: result: PTHREAD_CREATE_JOINABLE
configure:23503: checking if more special flags are required for pthreads
configure:23518: result: no
configure:23524: checking for PTHREAD_PRIO_INHERIT
configure:23541: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5
configure:23541: $? = 0
configure:23550: result: yes
configure:23899: checking for szlib library
configure:23901: result: suppressed
configure:24211: checking for hdf5 library
configure:24213: result: suppressed
configure:24412: checking netcdf.h usability
configure:24412: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
configure:24412: $? = 0
configure:24412: result: yes
configure:24412: checking netcdf.h presence
configure:24412: gcc -E -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c
configure:24412: $? = 0
configure:24412: result: yes
configure:24412: checking for netcdf.h
configure:24412: result: yes
configure:24422: checking for library containing nc_open
configure:24453: gcc -o conftest -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lm >&5
/var/tmp/ccR2gCPF.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `nc_open'
collect2: error: ld returned 1 exit status
configure:24453: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:24453: gcc -o conftest -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lnetcdf -lm >&5
configure:24453: $? = 0
configure:24470: result: -lnetcdf
configure:24485: checking nc-config script
configure:24489: checking for nc-config
configure:24519: result: no
configure:24577: result: Could not find nc-config! go on with default configuration
configure:24851: checking for the UDUNITS2 library
configure:24853: result: suppressed
configure:24999: checking for uuid/uuid.h extra include path
configure:25019: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
conftest.c:88:10: fatal error: uuid/uuid.h: No such file or directory
#include <uuid/uuid.h>
^~~~~~~~~~~~~
compilation terminated.
configure:25019: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <uuid/uuid.h>
configure:25053: result: not found
configure:25248: checking for uuid.h extra include path
configure:25270: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
conftest.c:55:10: fatal error: uuid.h: No such file or directory
#include <uuid.h>
^~~~~~~~
compilation terminated.
configure:25270: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| /* end confdefs.h. */
| #include <uuid.h>
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
|
| #include <uuid.h>
configure:25270: gcc -c -fPIC -fopenmp -I/usr/include/ossp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
conftest.c:55:10: fatal error: uuid.h: No such file or directory
#include <uuid.h>
^~~~~~~~
compilation terminated.
configure:25270: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| /* end confdefs.h. */
| #include <uuid.h>
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
|
| #include <uuid.h>
configure:25304: result: not found
configure:25520: checking for uuid.h extra include path
configure:25540: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
conftest.c:88:10: fatal error: uuid.h: No such file or directory
#include <uuid.h>
^~~~~~~~
compilation terminated.
configure:25540: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <uuid.h>
configure:25574: result: not found
configure:25899: checking for the CMOR library
configure:25901: result: suppressed
configure:26001: checking grib_api.h usability
configure:26001: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
configure:26001: $? = 0
configure:26001: result: yes
configure:26001: checking grib_api.h presence
configure:26001: gcc -E -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c
configure:26001: $? = 0
configure:26001: result: yes
configure:26001: checking for grib_api.h
configure:26001: result: yes
configure:26011: checking for library containing grib_get_message
configure:26042: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lnetcdf -lm >&5
/var/tmp/cc4L7t7j.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `grib_get_message'
collect2: error: ld returned 1 exit status
configure:26042: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:26042: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5
configure:26042: $? = 0
configure:26059: result: -leccodes
configure:26265: checking for the GRIB_API library
configure:26267: result: suppressed
configure:26276: checking for GRIB support
configure:26293: result: yes
configure:26299: checking for CGRIBEX support
configure:26316: result: yes
configure:26322: checking for SERVICE support
configure:26339: result: yes
configure:26345: checking for EXTRA support
configure:26362: result: yes
configure:26368: checking for IEG support
configure:26385: result: yes
configure:26391: checking for FFTW3 support
configure:26654: checking for the PROJ library
configure:26656: result: suppressed
configure:26836: checking for the CURL library
configure:26838: result: suppressed
configure:27018: checking for MAGICS library
configure:27020: result: suppressed
configure:27223: checking for XML2 library
configure:27225: result: suppressed
configure:27244: checking for build a separate CDI library and link CDO to it
configure:27261: result: no
configure:27285: checking for building an additional static CDO binary
configure:27298: result: no
configure:27310: checking for HIRLAM extensions
configure:27326: result: no
configure:27470: checking if compiler needs -Werror to reject unknown flags
configure:27486: gcc -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
gcc: error: unrecognized command line option '-Wunknown-warning-option'
configure:27486: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| /* end confdefs.h. */
| int foo(void);
| int
| main ()
| {
| foo()
| ;
| return 0;
| }
configure:27491: result: no
configure:27557: checking for the pthreads library -lpthreads
configure:27595: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lpthreads -leccodes -lnetcdf -lm >&5
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
configure:27595: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.9.8"
| #define PACKAGE_STRING "cdo 1.9.8"
| #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.9.8"
| #define PACKAGE "cdo"
| #define VERSION "1.9.8"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_CXX11 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
| #define F77_VERSION "unknown"
| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define HAVE_CF_INTERFACE 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void *a) { a = 0; }
| static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th, 0, start_routine, 0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0) /* ; */
| ;
| return 0;
| }
configure:27604: result: no
configure:27502: checking whether pthreads work without any flags
configure:27595: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5
configure:27595: $? = 0
configure:27604: result: yes
configure:27623: checking for joinable pthread attribute
configure:27638: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5
configure:27638: $? = 0
configure:27644: result: PTHREAD_CREATE_JOINABLE
configure:27654: checking if more special flags are required for pthreads
configure:27669: result: no
configure:27675: checking for PTHREAD_PRIO_INHERIT
configure:27701: result: yes
configure:28046: checking for szlib library
configure:28048: result: suppressed
configure:28246: checking for netcdf.h
configure:28246: result: yes
configure:28256: checking for library containing nc_open
configure:28304: result: -lnetcdf
configure:28319: checking nc-config script
configure:28323: checking for nc-config
configure:28353: result: no
configure:28411: result: Could not find nc-config! go on with default configuration
configure:28651: checking for grib_api.h
configure:28651: result: yes
configure:28661: checking for library containing grib_get_message
configure:28709: result: -leccodes
configure:28911: checking for the GRIB_API library
configure:28913: result: suppressed
configure:28929: checking for GRIB support
configure:28946: result: yes
configure:28952: checking for CGRIBEX support
configure:28969: result: yes
configure:28975: checking for SERVICE support
configure:28992: result: yes
configure:28998: checking for EXTRA support
configure:29015: result: yes
configure:29021: checking for IEG support
configure:29038: result: yes
configure:29070: checking for building an additional static CDI binary
configure:29083: result: no
configure:29095: checking for HIRLAM extensions
configure:29111: result: no
configure:29146: checking if x86/amd64 assembler speaks SSE4.2
configure:29169: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
configure:29169: $? = 0
configure:29172: result: yes
configure:29197: checking if x86/amd64 assembler speaks AVX
configure:29218: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
configure:29218: $? = 0
configure:29221: result: yes
configure:29246: checking if x86/amd64 assembler speaks AVX2
configure:29267: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5
configure:29267: $? = 0
configure:29270: result: yes
configure:29326: checking for gawk
configure:29353: result: gawk
configure:29492: checking that generated files are newer than configure
configure:29498: result: done
configure:29581: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by cdo config.status 1.9.8, which was
generated by GNU Autoconf 2.69. Invocation command line was

CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status

on Laptop-h-lastname

config.status:1417: creating test/cdoTestFunctions.test
config.status:1417: creating test/Afterburner.test
config.status:1417: creating test/Arith.test
config.status:1417: creating test/Arithc.test
config.status:1417: creating test/Cat.test
config.status:1417: creating test/Change.test
config.status:1417: creating test/Collgrid.test
config.status:1417: creating test/Comp.test
config.status:1417: creating test/Compc.test
config.status:1417: creating test/Copy_netcdf.test
config.status:1417: creating test/Detrend.test
config.status:1417: creating test/EOF.test
config.status:1417: creating test/EOFcoeff.test
config.status:1417: creating test/Enspctl.test
config.status:1417: creating test/Ensstat.test
config.status:1417: creating test/Expr.test
config.status:1417: creating test/File.test
config.status:1417: creating test/Filter.test
config.status:1417: creating test/Fldpctl.test
config.status:1417: creating test/Fldstat.test
config.status:1417: creating test/Genweights.test
config.status:1417: creating test/Gradsdes.test
config.status:1417: creating test/Gridarea.test
config.status:1417: creating test/Gridboxstat.test
config.status:1417: creating test/Inttime.test
config.status:1417: creating test/MapReduce.test
config.status:1417: creating test/Mergetime.test
config.status:1417: creating test/Merstat.test
config.status:1417: creating test/Monarith.test
config.status:1417: creating test/Multiyearstat.test
config.status:1417: creating test/Ninfo.test
config.status:1417: creating test/Read_grib.test
config.status:1417: creating test/Read_netcdf.test
config.status:1417: creating test/Remap.test
config.status:1417: creating test/Remap2.test
config.status:1417: creating test/Remap3.test
config.status:1417: creating test/Remapeta.test
config.status:1417: creating test/Remapgrid.test
config.status:1417: creating test/Runpctl.test
config.status:1417: creating test/Runstat.test
config.status:1417: creating test/Seasstat.test
config.status:1417: creating test/Select.test
config.status:1417: creating test/Setmiss.test
config.status:1417: creating test/Smooth.test
config.status:1417: creating test/Spectral.test
config.status:1417: creating test/Timpctl.test
config.status:1417: creating test/Timselstat.test
config.status:1417: creating test/Timselpctl.test
config.status:1417: creating test/Timstat.test
config.status:1417: creating test/Timstat2.test
config.status:1417: creating test/Varsstat.test
config.status:1417: creating test/Vertint.test
config.status:1417: creating test/Vertstat.test
config.status:1417: creating test/Ydrunstat.test
config.status:1417: creating test/Yearmonstat.test
config.status:1417: creating test/Ymonarith.test
config.status:1417: creating test/Zonstat.test
config.status:1417: creating test/threads.test
config.status:1417: creating test/tsformat.test
config.status:1417: creating test/wildcard.test
config.status:1417: creating test/executeOnly/Splitsel.test
config.status:1417: creating contrib/Makefile
config.status:1417: creating cdo.spec
config.status:1417: creating cdo.settings
config.status:1417: creating Makefile
config.status:1417: creating src/lib/ncl/Makefile
config.status:1417: creating src/lib/yac/Makefile
config.status:1417: creating src/lib/gradsdes/Makefile
config.status:1417: creating src/Makefile
config.status:1417: creating test/Makefile
config.status:1417: creating test/data/Makefile
config.status:1417: creating test/executeOnly/Makefile
config.status:1417: creating test/bandit_tests/Makefile
config.status:1417: creating src/config.h
config.status:1646: executing depfiles commands
config.status:1723: cd src/lib/yac && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles
make: Nothing to be done for 'am--depfiles'.
config.status:1728: $? = 0
config.status:1723: cd src/lib/gradsdes && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles
make: Nothing to be done for 'am--depfiles'.
config.status:1728: $? = 0
config.status:1723: cd src && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles
make: Nothing to be done for 'am--depfiles'.
config.status:1728: $? = 0
config.status:1723: cd test/bandit_tests && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles
make: Nothing to be done for 'am--depfiles'.
config.status:1728: $? = 0
config.status:1646: executing libtool commands
configure:32428: === configuring in libcdi (/usr/local/mypackages/cdo-1.9.8/libcdi)
configure:32491: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local/mypackages/cdo-1.9.8/build' 'prefix=/usr/local/mypackages/cdo-1.9.8/build' 'CFLAGS=-fPIC' '--with-netcdf=/usr/local/mypackages/netcdf-c-4.7.2' '--with-eccodes=/tmp/build_eccodes.2.14.1' --cache-file=/dev/null --srcdir=.
configure:32510: CDO is configured with the following options:
configure:32529:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-fPIC
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DCE_UUID_C_INCLUDE_set=
ac_cv_env_DCE_UUID_C_INCLUDE_value=
ac_cv_env_DCE_UUID_C_LIB_set=
ac_cv_env_DCE_UUID_C_LIB_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_OSSP_UUID_C_INCLUDE_set=
ac_cv_env_OSSP_UUID_C_INCLUDE_value=
ac_cv_env_OSSP_UUID_C_LIB_set=
ac_cv_env_OSSP_UUID_C_LIB_value=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set=
ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_set=
ac_cv_env_UTIL_LINUX_UUID_C_LIB_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_func_backtrace=yes
ac_cv_func_feenableexcept=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_execinfo_h=yes
ac_cv_header_fnmatch_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_grib_api_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_wordexp_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_member_fenv_t___control=no
ac_cv_member_fenv_t___mxcsr=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_ac_pt_BASH=/bin/bash
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_F77=f77
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp=-fopenmp
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_grib_get_message=-leccodes
ac_cv_search_nc_open=-lnetcdf
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
acx_cv_cf_flag='-DgFortran (probed)'
acx_cv_cfortran_works=yes
acx_cv_f77_cf_flag=-DgFortran
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_PTHREAD_PRIO_INHERIT=yes
ax_cv_cxx_compile_cxx11=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing aclocal-1.16'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing autoconf'
AUTOHEADER='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing autoheader'
AUTOMAKE='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing automake-1.16'
AWK='gawk'
BASH='/bin/bash'
BUILD_AVX2_TESTS_FALSE='#'
BUILD_AVX2_TESTS_TRUE=''
BUILD_AVX_TESTS_FALSE='#'
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE='#'
BUILD_SSE42_TESTS_TRUE=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-fPIC -fopenmp '
CLDFLAGS=''
CLIBS=''
CMOR_LIBS=''
CPP='gcc -E'
CPPFLAGS='-I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2 -fopenmp '
CYGPATH_W='echo'
DCE_UUIDROOT=''
DCE_UUID_C_INCLUDE=''
DCE_UUID_C_LIB=''
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECCODES_INCLUDE=' -I/tmp/build_eccodes.2.14.1/include'
ECCODES_LIBS=' -L/tmp/build_eccodes.2.14.1/lib -leccodes'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_APP_FALSE='#'
ENABLE_CDI_APP_TRUE=''
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='yes'
ENABLE_DATA='true'
ENABLE_EXTRA='yes'
ENABLE_FORTRAN='true'
ENABLE_GRIB='yes'
ENABLE_GRIBAPI='yes'
ENABLE_HIRLAM_EXTENSIONS_FALSE=''
ENABLE_HIRLAM_EXTENSIONS_TRUE='#'
ENABLE_IEG='yes'
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE='#'
ENABLE_NC2='no'
ENABLE_NC4='no'
ENABLE_NC4HDF5='no'
ENABLE_NETCDF='yes'
ENABLE_SERVICE='yes'
ENABLE_THREADS='yes'
EXEEXT=''
F77='f77'
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FORTRAN_WORKS='yes'
GREP='/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HAVE_CXX11='1'
HAVE_LIBGRIB_API_FALSE='#'
HAVE_LIBGRIB_API_TRUE=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib '
LIBOBJS=''
LIBS='-leccodes -lnetcdf -leccodes -lnetcdf -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=' -I/usr/local/mypackages/netcdf-c-4.7.2/include'
NETCDF_LIBS=' -L/usr/local/mypackages/netcdf-c-4.7.2/lib -lnetcdf'
NETCDF_ROOT='/usr/local/mypackages/netcdf-c-4.7.2'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OSSP_UUIDROOT=''
OSSP_UUID_C_INCLUDE=''
OSSP_UUID_C_LIB=''
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.9.8'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.9.8'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SYSTEM_TYPE='x86_64-pc-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USE_F77_FALSE='#'
USE_F77_TRUE=''
UTIL_LINUX_UUIDROOT=''
UTIL_LINUX_UUID_C_INCLUDE=''
UTIL_LINUX_UUID_C_LIB=''
UUID_C_INCLUDE=''
UUID_C_LIB=''
VERSION='1.9.8'
XML2_LIBS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_F77='f77'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local/mypackages/cdo-1.9.8/build'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.9.8"
#define PACKAGE_STRING "cdo 1.9.8"
#define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo"
#define PACKAGE_URL ""
#define CDO "1.9.8"
#define PACKAGE "cdo"
#define VERSION "1.9.8"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define restrict __restrict
#define HAVE_CXX11 1
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_FNMATCH_H 1
#define HAVE_WORDEXP_H 1
#define HAVE_EXECINFO_H 1
#define HAVE_MALLINFO 1
#define HAVE_BACKTRACE 1
#define HAVE_GETRLIMIT 1
#define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
#define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"
#define F77_VERSION "unknown"
#define SYSTEM_TYPE "x86_64-pc-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_FEENABLEEXCEPT 1
#define HAVE_FENV_T___MXCSR 1
#define HAVE_CF_INTERFACE 1
#define ENABLE_DATA 1
#define HAVE_PTHREAD_PRIO_INHERIT 1
#define HAVE_LIBPTHREAD 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_GRIB_API_H 1
#define HAVE_LIBGRIB_API 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define HAVE_PTHREAD_PRIO_INHERIT 1
#define HAVE_LIBPTHREAD 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_GRIB_API_H 1
#define HAVE_LIBGRIB_API 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define C_COMPILER "gcc -fPIC -fopenmp "
#define CXX_COMPILER "g++ -g -O2 -fopenmp "
#define F77_COMPILER "f77 -g -O2"

configure: exit 0
(2-2/3)