This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.8, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure prefix=/usr/local/mypackages/cdo-1.9.8/build CFLAGS=-fPIC --with-netcdf=/usr/local/mypackages/netcdf-c-4.7.2 --with-eccodes=/tmp/build_eccodes.2.14.1 ## --------- ## ## Platform. ## ## --------- ## hostname = Laptop-h-lastname uname -m = x86_64 uname -r = 4.4.0-18362-Microsoft uname -s = Linux uname -v = #476-Microsoft Fri Nov 01 16:53:00 PST 2019 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /snap/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2879: checking build system type configure:2893: result: x86_64-pc-linux-gnu configure:2913: checking host system type configure:2926: result: x86_64-pc-linux-gnu configure:2965: checking for a BSD-compatible install configure:3033: result: /usr/bin/install -c configure:3044: checking whether build environment is sane configure:3099: result: yes configure:3250: checking for a thread-safe mkdir -p configure:3289: result: /bin/mkdir -p configure:3296: checking for gawk configure:3312: found /usr/bin/gawk configure:3323: result: gawk configure:3334: checking whether make sets $(MAKE) configure:3356: result: yes configure:3385: checking whether make supports nested variables configure:3402: result: yes configure:3531: checking whether to enable maintainer-specific portions of Makefiles configure:3540: result: no configure:3559: checking whether make supports the include directive configure:3574: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3577: $? = 0 configure:3596: result: yes (GNU style) configure:3666: checking for gcc configure:3682: found /usr/bin/gcc configure:3693: result: gcc configure:3922: checking for C compiler version configure:3931: gcc --version >&5 gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3942: $? = 0 configure:3931: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1) configure:3942: $? = 0 configure:3931: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3942: $? = 1 configure:3931: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:3942: $? = 1 configure:3962: checking whether the C compiler works configure:3984: gcc -fPIC conftest.c >&5 configure:3988: $? = 0 configure:4036: result: yes configure:4039: checking for C compiler default output file name configure:4041: result: a.out configure:4047: checking for suffix of executables configure:4054: gcc -o conftest -fPIC conftest.c >&5 configure:4058: $? = 0 configure:4080: result: configure:4102: checking whether we are cross compiling configure:4110: gcc -o conftest -fPIC conftest.c >&5 configure:4114: $? = 0 configure:4121: ./conftest configure:4125: $? = 0 configure:4140: result: no configure:4145: checking for suffix of object files configure:4167: gcc -c -fPIC conftest.c >&5 configure:4171: $? = 0 configure:4192: result: o configure:4196: checking whether we are using the GNU C compiler configure:4215: gcc -c -fPIC conftest.c >&5 configure:4215: $? = 0 configure:4224: result: yes configure:4233: checking whether gcc accepts -g configure:4253: gcc -c -g conftest.c >&5 configure:4253: $? = 0 configure:4294: result: yes configure:4311: checking for gcc option to accept ISO C89 configure:4374: gcc -c -fPIC conftest.c >&5 configure:4374: $? = 0 configure:4387: result: none needed configure:4412: checking whether gcc understands -c and -o together configure:4434: gcc -c conftest.c -o conftest2.o configure:4437: $? = 0 configure:4434: gcc -c conftest.c -o conftest2.o configure:4437: $? = 0 configure:4449: result: yes configure:4468: checking dependency style of gcc configure:4579: result: gcc3 configure:4644: checking for ar configure:4660: found /usr/bin/ar configure:4671: result: ar configure:4697: checking the archiver (ar) interface configure:4713: gcc -c -fPIC conftest.c >&5 configure:4713: $? = 0 configure:4715: ar cru libconftest.a conftest.o >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:4718: $? = 0 configure:4746: result: ar configure:4767: setting up libtool configure:4815: checking how to print strings configure:4842: result: printf configure:4863: checking for a sed that does not truncate output configure:4927: result: /bin/sed configure:4945: checking for grep that handles long lines and -e configure:5003: result: /bin/grep configure:5008: checking for egrep configure:5070: result: /bin/grep -E configure:5075: checking for fgrep configure:5137: result: /bin/grep -F configure:5172: checking for ld used by gcc configure:5239: result: /usr/bin/ld configure:5246: checking if the linker (/usr/bin/ld) is GNU ld configure:5261: result: yes configure:5273: checking for BSD- or MS-compatible name lister (nm) configure:5327: result: /usr/bin/nm -B configure:5457: checking the name lister (/usr/bin/nm -B) interface configure:5464: gcc -c -fPIC conftest.c >&5 configure:5467: /usr/bin/nm -B "conftest.o" configure:5470: output 0000000000000000 B some_variable configure:5477: result: BSD nm configure:5480: checking whether ln -s works configure:5484: result: yes configure:5492: checking the maximum length of command line arguments configure:5623: result: 1572864 configure:5671: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5711: result: func_convert_file_noop configure:5718: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5738: result: func_convert_file_noop configure:5745: checking for /usr/bin/ld option to reload object files configure:5752: result: -r configure:5826: checking for objdump configure:5842: found /usr/bin/objdump configure:5853: result: objdump configure:5885: checking how to recognize dependent libraries configure:6085: result: pass_all configure:6170: checking for dlltool configure:6200: result: no configure:6230: checking how to associate runtime and link libraries configure:6257: result: printf %s\n configure:6381: checking for archiver @FILE support configure:6398: gcc -c -fPIC conftest.c >&5 configure:6398: $? = 0 configure:6401: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:6404: $? = 0 configure:6409: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') ar: conftest.o: No such file or directory configure:6412: $? = 1 configure:6424: result: @ configure:6482: checking for strip configure:6498: found /usr/bin/strip configure:6509: result: strip configure:6581: checking for ranlib configure:6597: found /usr/bin/ranlib configure:6608: result: ranlib configure:6710: checking command to parse /usr/bin/nm -B output from gcc object configure:6863: gcc -c -fPIC conftest.c >&5 configure:6866: $? = 0 configure:6870: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6873: $? = 0 configure:6939: gcc -o conftest -fPIC conftest.c conftstm.o >&5 configure:6942: $? = 0 configure:6980: result: ok configure:7027: checking for sysroot configure:7057: result: no configure:7064: checking for a working dd configure:7102: result: /bin/dd configure:7106: checking how to truncate binary pipes configure:7121: result: /bin/dd bs=4096 count=1 configure:7257: gcc -c -fPIC conftest.c >&5 configure:7260: $? = 0 configure:7450: checking for mt configure:7466: found /bin/mt configure:7477: result: mt configure:7500: checking if mt is a manifest tool configure:7506: mt '-?' configure:7514: result: no configure:8191: checking how to run the C preprocessor configure:8222: gcc -E conftest.c configure:8222: $? = 0 configure:8236: gcc -E conftest.c conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:8236: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | /* end confdefs.h. */ | #include configure:8261: result: gcc -E configure:8281: gcc -E conftest.c configure:8281: $? = 0 configure:8295: gcc -E conftest.c conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:8295: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | /* end confdefs.h. */ | #include configure:8324: checking for ANSI C header files configure:8344: gcc -c -fPIC conftest.c >&5 configure:8344: $? = 0 configure:8417: gcc -o conftest -fPIC conftest.c >&5 configure:8417: $? = 0 configure:8417: ./conftest configure:8417: $? = 0 configure:8428: result: yes configure:8441: checking for sys/types.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for sys/stat.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for stdlib.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for string.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for memory.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for strings.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for inttypes.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for stdint.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8441: checking for unistd.h configure:8441: gcc -c -fPIC conftest.c >&5 configure:8441: $? = 0 configure:8441: result: yes configure:8455: checking for dlfcn.h configure:8455: gcc -c -fPIC conftest.c >&5 configure:8455: $? = 0 configure:8455: result: yes configure:8711: checking for objdir configure:8726: result: .libs configure:8990: checking if gcc supports -fno-rtti -fno-exceptions configure:9008: gcc -c -fPIC -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:9012: $? = 0 configure:9025: result: no configure:9383: checking for gcc option to produce PIC configure:9390: result: -fPIC -DPIC configure:9398: checking if gcc PIC flag -fPIC -DPIC works configure:9416: gcc -c -fPIC -fPIC -DPIC -DPIC conftest.c >&5 configure:9420: $? = 0 configure:9433: result: yes configure:9462: checking if gcc static flag -static works configure:9490: result: yes configure:9505: checking if gcc supports -c -o file.o configure:9526: gcc -c -fPIC -o out/conftest2.o conftest.c >&5 configure:9530: $? = 0 configure:9552: result: yes configure:9560: checking if gcc supports -c -o file.o configure:9607: result: yes configure:9640: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10899: result: yes configure:10936: checking whether -lc should be explicitly linked in configure:10944: gcc -c -fPIC conftest.c >&5 configure:10947: $? = 0 configure:10962: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10965: $? = 0 configure:10979: result: no configure:11139: checking dynamic linker characteristics configure:11720: gcc -o conftest -fPIC -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11720: $? = 0 configure:11957: result: GNU/Linux ld.so configure:12079: checking how to hardcode library paths into programs configure:12104: result: immediate configure:12652: checking whether stripping libraries is possible configure:12657: result: yes configure:12692: checking if libtool supports shared libraries configure:12694: result: yes configure:12697: checking whether to build shared libraries configure:12722: result: yes configure:12725: checking whether to build static libraries configure:12729: result: yes configure:12814: checking for bash configure:12844: result: /bin/bash configure:12911: checking for gcc configure:12938: result: gcc configure:13003: checking for g++ configure:13019: found /usr/bin/g++ configure:13030: result: g++ configure:13052: checking for gcc option to accept ISO C99 configure:13201: gcc -c -fPIC conftest.c >&5 configure:13201: $? = 0 configure:13214: result: none needed configure:13342: checking for C++ compiler version configure:13351: g++ --version >&5 g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13362: $? = 0 configure:13351: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1) configure:13362: $? = 0 configure:13351: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:13362: $? = 1 configure:13351: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:13362: $? = 1 configure:13366: checking whether we are using the GNU C++ compiler configure:13385: g++ -c conftest.cpp >&5 configure:13385: $? = 0 configure:13394: result: yes configure:13403: checking whether g++ accepts -g configure:13423: g++ -c -g conftest.cpp >&5 configure:13423: $? = 0 configure:13464: result: yes configure:13489: checking dependency style of g++ configure:13600: result: gcc3 configure:13633: checking how to run the C++ preprocessor configure:13660: g++ -E conftest.cpp configure:13660: $? = 0 configure:13674: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:13674: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13699: result: g++ -E configure:13719: g++ -E conftest.cpp configure:13719: $? = 0 configure:13733: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:13733: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13895: checking for ld used by g++ configure:13962: result: /usr/bin/ld -m elf_x86_64 configure:13969: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:13984: result: yes configure:14039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15112: result: yes configure:15148: g++ -c -g -O2 conftest.cpp >&5 configure:15151: $? = 0 configure:15632: checking for g++ option to produce PIC configure:15639: result: -fPIC -DPIC configure:15647: checking if g++ PIC flag -fPIC -DPIC works configure:15665: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15669: $? = 0 configure:15682: result: yes configure:15705: checking if g++ static flag -static works configure:15733: result: yes configure:15745: checking if g++ supports -c -o file.o configure:15766: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15770: $? = 0 configure:15792: result: yes configure:15797: checking if g++ supports -c -o file.o configure:15844: result: yes configure:15874: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15914: result: yes configure:16055: checking dynamic linker characteristics configure:16800: result: GNU/Linux ld.so configure:16865: checking how to hardcode library paths into programs configure:16890: result: immediate configure:16983: checking for g77 configure:17013: result: no configure:16983: checking for xlf configure:17013: result: no configure:16983: checking for f77 configure:16999: found /usr/bin/f77 configure:17010: result: f77 configure:17036: checking for Fortran 77 compiler version configure:17045: f77 --version >&5 GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:17056: $? = 0 configure:17045: f77 -v >&5 Using built-in specs. COLLECT_GCC=f77 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1) configure:17056: $? = 0 configure:17045: f77 -V >&5 f77: error: unrecognized command line option '-V' f77: fatal error: no input files compilation terminated. configure:17056: $? = 1 configure:17045: f77 -qversion >&5 f77: error: unrecognized command line option '-qversion'; did you mean '--version'? f77: fatal error: no input files compilation terminated. configure:17056: $? = 1 configure:17065: checking whether we are using the GNU Fortran 77 compiler configure:17078: f77 -c conftest.F >&5 configure:17078: $? = 0 configure:17087: result: yes configure:17093: checking whether f77 accepts -g configure:17104: f77 -c -g conftest.f >&5 configure:17104: $? = 0 configure:17112: result: yes configure:17241: checking if libtool supports shared libraries configure:17243: result: yes configure:17246: checking whether to build shared libraries configure:17270: result: yes configure:17273: checking whether to build static libraries configure:17277: result: yes configure:17629: checking for f77 option to produce PIC configure:17636: result: -fPIC configure:17644: checking if f77 PIC flag -fPIC works configure:17662: f77 -c -g -O2 -fPIC conftest.f >&5 configure:17666: $? = 0 configure:17679: result: yes configure:17702: checking if f77 static flag -static works configure:17730: result: yes configure:17742: checking if f77 supports -c -o file.o configure:17763: f77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:17767: $? = 0 configure:17789: result: yes configure:17794: checking if f77 supports -c -o file.o configure:17841: result: yes configure:17871: checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:19080: result: yes configure:19221: checking dynamic linker characteristics configure:19960: result: GNU/Linux ld.so configure:20025: checking how to hardcode library paths into programs configure:20050: result: immediate configure:20083: checking for C/C++ restrict keyword configure:20108: gcc -c -fPIC conftest.c >&5 configure:20108: $? = 0 configure:20116: result: __restrict configure:20136: checking whether g++ supports C++11 features by default configure:20430: g++ -c -g -O2 conftest.cpp >&5 configure:20430: $? = 0 configure:20437: result: yes configure:21122: checking for gcc option to support OpenMP configure:21137: gcc -o conftest -fPIC conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^~~~~ In file included from conftest.c:30:0: /usr/lib/gcc/x86_64-linux-gnu/7/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' typedef struct ^~~~~~~ configure:21137: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21155: gcc -o conftest -fPIC -fopenmp conftest.c >&5 configure:21155: $? = 0 configure:21169: result: -fopenmp configure:21223: checking for ar configure:21250: result: ar configure:21407: checking for ld configure:21434: result: /usr/bin/ld -m elf_x86_64 configure:21499: checking for nm configure:21526: result: /usr/bin/nm -B configure:21591: checking for ar configure:21618: result: ar configure:21683: checking for as configure:21699: found /usr/bin/as configure:21710: result: as configure:21775: checking for dlltool configure:21802: result: false configure:21867: checking for objdump configure:21894: result: objdump configure:21959: checking for strip configure:21986: result: strip configure:22051: checking for ranlib configure:22078: result: ranlib configure:22114: checking for special C compiler options needed for large files configure:22159: result: no configure:22165: checking for _FILE_OFFSET_BITS value needed for large files configure:22190: gcc -c -fPIC conftest.c >&5 configure:22190: $? = 0 configure:22222: result: no configure:22315: checking for stdlib.h configure:22315: result: yes configure:22315: checking for unistd.h configure:22315: result: yes configure:22315: checking for sys/param.h configure:22315: gcc -c -fPIC conftest.c >&5 configure:22315: $? = 0 configure:22315: result: yes configure:22335: checking for getpagesize configure:22335: gcc -o conftest -fPIC conftest.c >&5 configure:22335: $? = 0 configure:22335: result: yes configure:22344: checking for working mmap configure:22491: gcc -o conftest -fPIC conftest.c >&5 configure:22491: $? = 0 configure:22491: ./conftest configure:22491: $? = 0 configure:22501: result: yes configure:22512: checking for struct stat.st_blksize configure:22512: gcc -c -fPIC conftest.c >&5 configure:22512: $? = 0 configure:22512: result: yes configure:22526: checking sys/resource.h usability configure:22526: gcc -c -fPIC conftest.c >&5 configure:22526: $? = 0 configure:22526: result: yes configure:22526: checking sys/resource.h presence configure:22526: gcc -E conftest.c configure:22526: $? = 0 configure:22526: result: yes configure:22526: checking for sys/resource.h configure:22526: result: yes configure:22538: checking sys/times.h usability configure:22538: gcc -c -fPIC conftest.c >&5 configure:22538: $? = 0 configure:22538: result: yes configure:22538: checking sys/times.h presence configure:22538: gcc -E conftest.c configure:22538: $? = 0 configure:22538: result: yes configure:22538: checking for sys/times.h configure:22538: result: yes configure:22550: checking malloc.h usability configure:22550: gcc -c -fPIC conftest.c >&5 configure:22550: $? = 0 configure:22550: result: yes configure:22550: checking malloc.h presence configure:22550: gcc -E conftest.c configure:22550: $? = 0 configure:22550: result: yes configure:22550: checking for malloc.h configure:22550: result: yes configure:22562: checking glob.h usability configure:22562: gcc -c -fPIC conftest.c >&5 configure:22562: $? = 0 configure:22562: result: yes configure:22562: checking glob.h presence configure:22562: gcc -E conftest.c configure:22562: $? = 0 configure:22562: result: yes configure:22562: checking for glob.h configure:22562: result: yes configure:22574: checking fnmatch.h usability configure:22574: gcc -c -fPIC conftest.c >&5 configure:22574: $? = 0 configure:22574: result: yes configure:22574: checking fnmatch.h presence configure:22574: gcc -E conftest.c configure:22574: $? = 0 configure:22574: result: yes configure:22574: checking for fnmatch.h configure:22574: result: yes configure:22586: checking wordexp.h usability configure:22586: gcc -c -fPIC conftest.c >&5 configure:22586: $? = 0 configure:22586: result: yes configure:22586: checking wordexp.h presence configure:22586: gcc -E conftest.c configure:22586: $? = 0 configure:22586: result: yes configure:22586: checking for wordexp.h configure:22586: result: yes configure:22598: checking execinfo.h usability configure:22598: gcc -c -fPIC conftest.c >&5 configure:22598: $? = 0 configure:22598: result: yes configure:22598: checking execinfo.h presence configure:22598: gcc -E conftest.c configure:22598: $? = 0 configure:22598: result: yes configure:22598: checking for execinfo.h configure:22598: result: yes configure:22612: checking for mallinfo configure:22612: gcc -o conftest -fPIC conftest.c >&5 configure:22612: $? = 0 configure:22612: result: yes configure:22623: checking for backtrace configure:22623: gcc -o conftest -fPIC conftest.c >&5 configure:22623: $? = 0 configure:22623: result: yes configure:22636: checking for getrlimit configure:22636: gcc -o conftest -fPIC conftest.c >&5 configure:22636: $? = 0 configure:22636: result: yes configure:22711: checking for floor in -lm configure:22736: gcc -o conftest -fPIC conftest.c -lm >&5 conftest.c:53:6: warning: conflicting types for built-in function 'floor' [-Wbuiltin-declaration-mismatch] char floor (); ^~~~~ configure:22736: $? = 0 configure:22745: result: yes configure:22759: checking for feenableexcept configure:22759: gcc -o conftest -fPIC conftest.c -lm >&5 configure:22759: $? = 0 configure:22759: result: yes configure:22769: checking for fenv_t.__control configure:22769: gcc -c -fPIC conftest.c >&5 conftest.c: In function 'main': conftest.c:54:13: error: 'fenv_t {aka struct }' has no member named '__control'; did you mean '__control_word'? if (ac_aggr.__control) ^~~~~~~~~ __control_word configure:22769: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:22769: gcc -c -fPIC conftest.c >&5 conftest.c: In function 'main': conftest.c:54:20: error: 'fenv_t {aka struct }' has no member named '__control'; did you mean '__control_word'? if (sizeof ac_aggr.__control) ^~~~~~~~~ __control_word configure:22769: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:22769: result: no configure:22779: checking for fenv_t.__mxcsr configure:22779: gcc -c -fPIC conftest.c >&5 configure:22779: $? = 0 configure:22779: result: yes configure:22802: checking C preprocessor flags for Fortran calling convention cfortran.h configure:22888: result: -DgFortran (probed) configure:22923: checking if C externals constructed with cfortran.h work configure:22983: gcc -c -fPIC -I./src -DgFortran conftest.c >&5 configure:22983: $? = 0 configure:22984: Renaming C object file. configure:22987: $? = 0 configure:23005: f77 -c -g -O2 conftest.f >&5 configure:23005: $? = 0 configure:23006: Renaming Fortran object file. configure:23009: $? = 0 configure:23065: f77 -o conftest -g -O2 conftest.f conftest_c.o conftest_f.o -lm >&5 configure:23065: $? = 0 configure:23065: ./conftest configure:23065: $? = 0 configure:23099: result: yes configure:23153: checking for DATA support configure:23167: result: configure:23319: checking if compiler needs -Werror to reject unknown flags configure:23335: gcc -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -DgFortran conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' configure:23335: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:23340: result: no configure:23406: checking for the pthreads library -lpthreads configure:23444: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:23444: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:23453: result: no configure:23351: checking whether pthreads work without any flags configure:23444: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5 configure:23444: $? = 0 configure:23453: result: yes configure:23472: checking for joinable pthread attribute configure:23487: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5 configure:23487: $? = 0 configure:23493: result: PTHREAD_CREATE_JOINABLE configure:23503: checking if more special flags are required for pthreads configure:23518: result: no configure:23524: checking for PTHREAD_PRIO_INHERIT configure:23541: gcc -o conftest -fPIC -fopenmp -DgFortran conftest.c -lm >&5 configure:23541: $? = 0 configure:23550: result: yes configure:23899: checking for szlib library configure:23901: result: suppressed configure:24211: checking for hdf5 library configure:24213: result: suppressed configure:24412: checking netcdf.h usability configure:24412: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 configure:24412: $? = 0 configure:24412: result: yes configure:24412: checking netcdf.h presence configure:24412: gcc -E -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c configure:24412: $? = 0 configure:24412: result: yes configure:24412: checking for netcdf.h configure:24412: result: yes configure:24422: checking for library containing nc_open configure:24453: gcc -o conftest -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lm >&5 /var/tmp/ccR2gCPF.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: error: ld returned 1 exit status configure:24453: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:24453: gcc -o conftest -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lnetcdf -lm >&5 configure:24453: $? = 0 configure:24470: result: -lnetcdf configure:24485: checking nc-config script configure:24489: checking for nc-config configure:24519: result: no configure:24577: result: Could not find nc-config! go on with default configuration configure:24851: checking for the UDUNITS2 library configure:24853: result: suppressed configure:24999: checking for uuid/uuid.h extra include path configure:25019: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 conftest.c:88:10: fatal error: uuid/uuid.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:25019: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25053: result: not found configure:25248: checking for uuid.h extra include path configure:25270: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 conftest.c:55:10: fatal error: uuid.h: No such file or directory #include ^~~~~~~~ compilation terminated. configure:25270: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | /* end confdefs.h. */ | #include | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | | #include configure:25270: gcc -c -fPIC -fopenmp -I/usr/include/ossp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 conftest.c:55:10: fatal error: uuid.h: No such file or directory #include ^~~~~~~~ compilation terminated. configure:25270: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | /* end confdefs.h. */ | #include | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | | #include configure:25304: result: not found configure:25520: checking for uuid.h extra include path configure:25540: gcc -c -fPIC -fopenmp -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 conftest.c:88:10: fatal error: uuid.h: No such file or directory #include ^~~~~~~~ compilation terminated. configure:25540: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25574: result: not found configure:25899: checking for the CMOR library configure:25901: result: suppressed configure:26001: checking grib_api.h usability configure:26001: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 configure:26001: $? = 0 configure:26001: result: yes configure:26001: checking grib_api.h presence configure:26001: gcc -E -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c configure:26001: $? = 0 configure:26001: result: yes configure:26001: checking for grib_api.h configure:26001: result: yes configure:26011: checking for library containing grib_get_message configure:26042: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lnetcdf -lm >&5 /var/tmp/cc4L7t7j.o: In function `main': conftest.c:(.text+0xa): undefined reference to `grib_get_message' collect2: error: ld returned 1 exit status configure:26042: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:26042: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5 configure:26042: $? = 0 configure:26059: result: -leccodes configure:26265: checking for the GRIB_API library configure:26267: result: suppressed configure:26276: checking for GRIB support configure:26293: result: yes configure:26299: checking for CGRIBEX support configure:26316: result: yes configure:26322: checking for SERVICE support configure:26339: result: yes configure:26345: checking for EXTRA support configure:26362: result: yes configure:26368: checking for IEG support configure:26385: result: yes configure:26391: checking for FFTW3 support configure:26654: checking for the PROJ library configure:26656: result: suppressed configure:26836: checking for the CURL library configure:26838: result: suppressed configure:27018: checking for MAGICS library configure:27020: result: suppressed configure:27223: checking for XML2 library configure:27225: result: suppressed configure:27244: checking for build a separate CDI library and link CDO to it configure:27261: result: no configure:27285: checking for building an additional static CDO binary configure:27298: result: no configure:27310: checking for HIRLAM extensions configure:27326: result: no configure:27470: checking if compiler needs -Werror to reject unknown flags configure:27486: gcc -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' configure:27486: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:27491: result: no configure:27557: checking for the pthreads library -lpthreads configure:27595: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -lpthreads -leccodes -lnetcdf -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:27595: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.8" | #define PACKAGE_STRING "cdo 1.9.8" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.8" | #define PACKAGE "cdo" | #define VERSION "1.9.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" | #define F77_VERSION "unknown" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:27604: result: no configure:27502: checking whether pthreads work without any flags configure:27595: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5 configure:27595: $? = 0 configure:27604: result: yes configure:27623: checking for joinable pthread attribute configure:27638: gcc -o conftest -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib conftest.c -leccodes -lnetcdf -lm >&5 configure:27638: $? = 0 configure:27644: result: PTHREAD_CREATE_JOINABLE configure:27654: checking if more special flags are required for pthreads configure:27669: result: no configure:27675: checking for PTHREAD_PRIO_INHERIT configure:27701: result: yes configure:28046: checking for szlib library configure:28048: result: suppressed configure:28246: checking for netcdf.h configure:28246: result: yes configure:28256: checking for library containing nc_open configure:28304: result: -lnetcdf configure:28319: checking nc-config script configure:28323: checking for nc-config configure:28353: result: no configure:28411: result: Could not find nc-config! go on with default configuration configure:28651: checking for grib_api.h configure:28651: result: yes configure:28661: checking for library containing grib_get_message configure:28709: result: -leccodes configure:28911: checking for the GRIB_API library configure:28913: result: suppressed configure:28929: checking for GRIB support configure:28946: result: yes configure:28952: checking for CGRIBEX support configure:28969: result: yes configure:28975: checking for SERVICE support configure:28992: result: yes configure:28998: checking for EXTRA support configure:29015: result: yes configure:29021: checking for IEG support configure:29038: result: yes configure:29070: checking for building an additional static CDI binary configure:29083: result: no configure:29095: checking for HIRLAM extensions configure:29111: result: no configure:29146: checking if x86/amd64 assembler speaks SSE4.2 configure:29169: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 configure:29169: $? = 0 configure:29172: result: yes configure:29197: checking if x86/amd64 assembler speaks AVX configure:29218: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 configure:29218: $? = 0 configure:29221: result: yes configure:29246: checking if x86/amd64 assembler speaks AVX2 configure:29267: gcc -c -fPIC -fopenmp -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran conftest.c >&5 configure:29267: $? = 0 configure:29270: result: yes configure:29326: checking for gawk configure:29353: result: gawk configure:29492: checking that generated files are newer than configure configure:29498: result: done configure:29581: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.9.8, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Laptop-h-lastname config.status:1417: creating test/cdoTestFunctions.test config.status:1417: creating test/Afterburner.test config.status:1417: creating test/Arith.test config.status:1417: creating test/Arithc.test config.status:1417: creating test/Cat.test config.status:1417: creating test/Change.test config.status:1417: creating test/Collgrid.test config.status:1417: creating test/Comp.test config.status:1417: creating test/Compc.test config.status:1417: creating test/Copy_netcdf.test config.status:1417: creating test/Detrend.test config.status:1417: creating test/EOF.test config.status:1417: creating test/EOFcoeff.test config.status:1417: creating test/Enspctl.test config.status:1417: creating test/Ensstat.test config.status:1417: creating test/Expr.test config.status:1417: creating test/File.test config.status:1417: creating test/Filter.test config.status:1417: creating test/Fldpctl.test config.status:1417: creating test/Fldstat.test config.status:1417: creating test/Genweights.test config.status:1417: creating test/Gradsdes.test config.status:1417: creating test/Gridarea.test config.status:1417: creating test/Gridboxstat.test config.status:1417: creating test/Inttime.test config.status:1417: creating test/MapReduce.test config.status:1417: creating test/Mergetime.test config.status:1417: creating test/Merstat.test config.status:1417: creating test/Monarith.test config.status:1417: creating test/Multiyearstat.test config.status:1417: creating test/Ninfo.test config.status:1417: creating test/Read_grib.test config.status:1417: creating test/Read_netcdf.test config.status:1417: creating test/Remap.test config.status:1417: creating test/Remap2.test config.status:1417: creating test/Remap3.test config.status:1417: creating test/Remapeta.test config.status:1417: creating test/Remapgrid.test config.status:1417: creating test/Runpctl.test config.status:1417: creating test/Runstat.test config.status:1417: creating test/Seasstat.test config.status:1417: creating test/Select.test config.status:1417: creating test/Setmiss.test config.status:1417: creating test/Smooth.test config.status:1417: creating test/Spectral.test config.status:1417: creating test/Timpctl.test config.status:1417: creating test/Timselstat.test config.status:1417: creating test/Timselpctl.test config.status:1417: creating test/Timstat.test config.status:1417: creating test/Timstat2.test config.status:1417: creating test/Varsstat.test config.status:1417: creating test/Vertint.test config.status:1417: creating test/Vertstat.test config.status:1417: creating test/Ydrunstat.test config.status:1417: creating test/Yearmonstat.test config.status:1417: creating test/Ymonarith.test config.status:1417: creating test/Zonstat.test config.status:1417: creating test/threads.test config.status:1417: creating test/tsformat.test config.status:1417: creating test/wildcard.test config.status:1417: creating test/executeOnly/Splitsel.test config.status:1417: creating contrib/Makefile config.status:1417: creating cdo.spec config.status:1417: creating cdo.settings config.status:1417: creating Makefile config.status:1417: creating src/lib/ncl/Makefile config.status:1417: creating src/lib/yac/Makefile config.status:1417: creating src/lib/gradsdes/Makefile config.status:1417: creating src/Makefile config.status:1417: creating test/Makefile config.status:1417: creating test/data/Makefile config.status:1417: creating test/executeOnly/Makefile config.status:1417: creating test/bandit_tests/Makefile config.status:1417: creating src/config.h config.status:1646: executing depfiles commands config.status:1723: cd src/lib/yac && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles make: Nothing to be done for 'am--depfiles'. config.status:1728: $? = 0 config.status:1723: cd src/lib/gradsdes && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles make: Nothing to be done for 'am--depfiles'. config.status:1728: $? = 0 config.status:1723: cd src && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles make: Nothing to be done for 'am--depfiles'. config.status:1728: $? = 0 config.status:1723: cd test/bandit_tests && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles make: Nothing to be done for 'am--depfiles'. config.status:1728: $? = 0 config.status:1646: executing libtool commands configure:32428: === configuring in libcdi (/usr/local/mypackages/cdo-1.9.8/libcdi) configure:32491: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local/mypackages/cdo-1.9.8/build' 'prefix=/usr/local/mypackages/cdo-1.9.8/build' 'CFLAGS=-fPIC' '--with-netcdf=/usr/local/mypackages/netcdf-c-4.7.2' '--with-eccodes=/tmp/build_eccodes.2.14.1' --cache-file=/dev/null --srcdir=. configure:32510: CDO is configured with the following options: configure:32529: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fPIC ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_m_floor=yes ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_ac_pt_BASH=/bin/bash ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_F77=f77 ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_MANIFEST_TOOL=mt ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_grib_get_message=-leccodes ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_cf_flag='-DgFortran (probed)' acx_cv_cfortran_works=yes acx_cv_f77_cf_flag=-DgFortran am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_cxx_compile_cxx11=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing autoconf' AUTOHEADER='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing autoheader' AUTOMAKE='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing automake-1.16' AWK='gawk' BASH='/bin/bash' BUILD_AVX2_TESTS_FALSE='#' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-fPIC -fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -I/tmp/build_eccodes.2.14.1/include -I/usr/local/mypackages/netcdf-c-4.7.2/include -DgFortran' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp ' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE=' -I/tmp/build_eccodes.2.14.1/include' ECCODES_LIBS=' -L/tmp/build_eccodes.2.14.1/lib -leccodes' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_APP_FALSE='#' ENABLE_CDI_APP_TRUE='' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='true' ENABLE_EXTRA='yes' ENABLE_FORTRAN='true' ENABLE_GRIB='yes' ENABLE_GRIBAPI='yes' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='#' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='no' ENABLE_NC4='no' ENABLE_NC4HDF5='no' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' ENABLE_THREADS='yes' EXEEXT='' F77='f77' FFLAGS='-g -O2' FGREP='/bin/grep -F' FORTRAN_WORKS='yes' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_CXX11='1' HAVE_LIBGRIB_API_FALSE='#' HAVE_LIBGRIB_API_TRUE='' HDF5_INCLUDE='' HDF5_LIBS='' HDF5_ROOT='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib -L/tmp/build_eccodes.2.14.1/lib -L/usr/local/mypackages/netcdf-c-4.7.2/lib ' LIBOBJS='' LIBS='-leccodes -lnetcdf -leccodes -lnetcdf -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE=' -I/usr/local/mypackages/netcdf-c-4.7.2/include' NETCDF_LIBS=' -L/usr/local/mypackages/netcdf-c-4.7.2/lib -lnetcdf' NETCDF_ROOT='/usr/local/mypackages/netcdf-c-4.7.2' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.8' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.8' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' SYSTEM_TYPE='x86_64-pc-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='' UUID_C_INCLUDE='' UUID_C_LIB='' VERSION='1.9.8' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='f77' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /usr/local/mypackages/cdo-1.9.8/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local/mypackages/cdo-1.9.8/build' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.9.8" #define PACKAGE_STRING "cdo 1.9.8" #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.9.8" #define PACKAGE "cdo" #define VERSION "1.9.8" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_CXX11 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_MALLINFO 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0" #define F77_VERSION "unknown" #define SYSTEM_TYPE "x86_64-pc-linux-gnu" #define HAVE_LIBM 1 #define HAVE_FEENABLEEXCEPT 1 #define HAVE_FENV_T___MXCSR 1 #define HAVE_CF_INTERFACE 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define C_COMPILER "gcc -fPIC -fopenmp " #define CXX_COMPILER "g++ -g -O2 -fopenmp " #define F77_COMPILER "f77 -g -O2" configure: exit 0