|
|
|
Configuration completed.
|
|
|
|
You can now say 'make' to compile the CDI package and 'make install' to install it afterwards.
|
|
|
|
configure: CDO is configured with the following options:
|
|
{
|
|
"CC" : "gcc -std=gnu99",
|
|
"CPP" : "gcc -E",
|
|
"CPPFLAGS" : "-I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include ",
|
|
"CFLAGS" : "-fPIC -fopenmp ",
|
|
"LDFLAGS" : "-L/opt/cdo-install/lib -L/opt/cdo-install/lib -L/opt/cdo-install/lib ",
|
|
"LIBS" : "-lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm ",
|
|
"FCFLAGS" : "",
|
|
"INCLUDES" : "@INCLUDES@",
|
|
"LD" : "/usr/bin/ld -m elf_x86_64",
|
|
"NM" : "/usr/bin/nm -B",
|
|
"AR" : "ar",
|
|
"AS" : "as",
|
|
"DLLTOOL" : "false",
|
|
"OBJDUMP" : "objdump",
|
|
"STRIP" : "strip",
|
|
"RANLIB" : "ranlib",
|
|
"INSTALL" : "/usr/bin/install -c",
|
|
"cdi" : {
|
|
"enable_cdi_lib" : false
|
|
},
|
|
"threads" : {
|
|
"lib" : "",
|
|
"include" : ""
|
|
"szlib" : {
|
|
"lib" : "",
|
|
"include" : ""
|
|
},
|
|
"hdf5" : {
|
|
"lib" : " -L/opt/cdo-install/lib -lhdf5",
|
|
"include" : " -I/opt/cdo-install/include"
|
|
},
|
|
"netcdf" : {
|
|
"lib" : " -L/opt/cdo-install/lib -lnetcdf",
|
|
"include" : " -I/opt/cdo-install/include"
|
|
},
|
|
"udunits2" : {
|
|
"lib" : "",
|
|
"include" : ""
|
|
},
|
|
"proj" : {
|
|
"lib" : "",
|
|
"include" : ""
|
|
},
|
|
"magics" : {
|
|
"lib" : "",
|
|
"include" : ""
|
|
},
|
|
"USER_NAME" : "awips",
|
|
"HOST_NAME" : "justin",
|
|
"SYSTEM_TYPE" : "x86_64-unknown-linux-gnu"
|
|
}
|
|
configure:
|
|
|
|
Configuration completed.
|
|
|
|
You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.
|
|
|
|
You have mail in /var/spool/mail/awips
|
|
[awips@justin cdo-1.7.2rc5]$ make && make check && make install
|
|
Making all in libcdi
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
Making all in src
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
make all-am
|
|
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
Making all in interfaces
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
|
|
make[2]: Nothing to be done for `all'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
|
|
Making all in app
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
|
|
make[2]: Nothing to be done for `all'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
|
|
Making all in examples
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
|
|
make[2]: Nothing to be done for `all'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
|
|
Making all in examples/pio
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
|
|
make[2]: Nothing to be done for `all'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
|
|
Making all in tests
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make[2]: Nothing to be done for `all'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
make[2]: Nothing to be done for `all-am'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
Making all in src
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
make all-am
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
Making all in contrib
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
|
|
if (hash ruby &> /dev/null) ; then \
|
|
ruby -KN ./makecompl.rb -o cdoCompletion; \
|
|
fi
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
|
|
Making all in test/data
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
|
|
make[1]: Nothing to be done for `all'.
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
|
|
Making all in test
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
|
|
make[1]: Nothing to be done for `all'.
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5'
|
|
make[1]: Nothing to be done for `all-am'.
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5'
|
|
Making check in libcdi
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
Making check in src
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
|
|
Making check in interfaces
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
|
|
make[2]: Nothing to be done for `check'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
|
|
Making check in app
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
|
|
make[2]: Nothing to be done for `check'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
|
|
Making check in examples
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
|
|
make[2]: Nothing to be done for `check'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
|
|
Making check in examples/pio
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
|
|
make[2]: Nothing to be done for `check'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
|
|
Making check in tests
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make cksum_verify test_grib cksum_write cksum_read pio_write test_resource_copy cksum_write_chunk pio_write_deco2d test_table test_byteswap test_cdf_write test_cdf_read
|
|
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make[3]: `cksum_verify' is up to date.
|
|
make[3]: `test_grib' is up to date.
|
|
make[3]: `cksum_write' is up to date.
|
|
make[3]: `cksum_read' is up to date.
|
|
make[3]: `pio_write' is up to date.
|
|
make[3]: `test_resource_copy' is up to date.
|
|
make[3]: `cksum_write_chunk' is up to date.
|
|
make[3]: `pio_write_deco2d' is up to date.
|
|
make[3]: `test_table' is up to date.
|
|
make[3]: `test_byteswap' is up to date.
|
|
make[3]: `test_cdf_write' is up to date.
|
|
make[3]: `test_cdf_read' is up to date.
|
|
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make check-TESTS
|
|
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
PASS: cksum_verify
|
|
PASS: test_cksum_grib
|
|
PASS: test_cksum_nc
|
|
PASS: test_cksum_extra
|
|
PASS: test_cksum_service
|
|
PASS: test_cksum_nc2
|
|
PASS: test_cksum_nc4
|
|
PASS: test_cksum_ieg
|
|
PASS: test_chunk_cksum
|
|
PASS: pio_write_run
|
|
SKIP: pio_cksum_mpinonb
|
|
SKIP: pio_cksum_fpguard
|
|
SKIP: pio_cksum_asynch
|
|
SKIP: pio_cksum_writer
|
|
SKIP: pio_cksum_cdf
|
|
SKIP: pio_cksum_mpi_fw_ordered
|
|
SKIP: pio_cksum_mpi_fw_at_all
|
|
SKIP: pio_cksum_mpi_fw_at_reblock
|
|
PASS: test_resource_copy
|
|
PASS: pio_write_deco2d_run
|
|
SKIP: test_f2003
|
|
PASS: test_cdf_transformation
|
|
PASS: test_table
|
|
PASS: test_byteswap
|
|
======================
|
|
All 15 tests passed
|
|
(9 tests were not run)
|
|
======================
|
|
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
make[2]: Nothing to be done for `check-am'.
|
|
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
|
|
Making check in src
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
|
|
Making check in contrib
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
|
|
if (hash ruby &> /dev/null) ; then \
|
|
ruby -KN ./makecompl.rb -o cdoCompletion; \
|
|
fi
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
|
|
Making check in test/data
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
|
|
make[1]: Nothing to be done for `check'.
|
|
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
|
|
Making check in test
|
|
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
|
|
make check-TESTS
|
|
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
|
|
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
|
|
PASS: threads.test 1 - chaining set 1
|
|
PASS: tsformat.test 1 - chaining set 1 with SERVICE
|
|
PASS: tsformat.test 2 - chaining set 1 with EXTRA
|
|
PASS: tsformat.test 3 - chaining set 1 with IEG
|
|
PASS: tsformat.test 4 - chaining set 1 with GRIB
|
|
PASS: tsformat.test 5 - chaining set 1 with GRIB_API
|
|
PASS: tsformat.test 6 - chaining set 1 with netCDF
|
|
PASS: tsformat.test 7 - chaining set 1 with netCDF2
|
|
FAIL: tsformat.test 8 - chaining set 1 with netCDF4 <<< Any Thoughts?
|
|
PASS: wildcard.test 1 - 'testfile01'
|
|
PASS: File.test 1 - write srv
|
|
PASS: File.test 2 - write ext
|
|
PASS: File.test 3 - write ieg
|
|
PASS: File.test 4 - write grb
|
|
PASS: File.test 5 - write grb2
|
|
PASS: File.test 6 - write nc
|
|
PASS: File.test 7 - write nc2
|
|
PASS: File.test 8 - write nc4
|
|
PASS: File.test 9 - copy srv
|
|
PASS: File.test 10 - copy ext
|
|
PASS: File.test 11 - copy ieg
|
|
PASS: File.test 12 - copy grb
|
|
PASS: File.test 13 - copy grb2
|
|
PASS: File.test 14 - copy nc
|
|
PASS: File.test 15 - copy nc2
|
|
PASS: File.test 16 - copy nc4
|
|
PASS: Read_grib.test 1 - sinfo testfile01
|
|
PASS: Read_grib.test 2 - sinfo testfile02
|
|
PASS: Read_grib.test 3 - sinfo testfile03
|
|
PASS: Read_grib.test 4 - info testfile01
|
|
PASS: Read_grib.test 5 - info testfile02
|
|
PASS: Read_grib.test 6 - info testfile03
|
|
PASS: Read_netcdf.test 1 - sinfon testfile01
|
|
PASS: Read_netcdf.test 2 - sinfon testfile02
|
|
PASS: Read_netcdf.test 3 - infon testfile01
|
|
PASS: Read_netcdf.test 4 - infon testfile02
|
|
PASS: Copy_netcdf.test 1 - copy datar.nc
|
|
PASS: Copy_netcdf.test 2 - copy datag.nc
|
|
PASS: Copy_netcdf.test 3 - copy datac.nc
|
|
PASS: Copy_netcdf.test 4 - copy datau.nc
|
|
PASS: Copy_netcdf.test 5 - copy testfile01c.nc
|
|
PASS: Cat.test 1 - cat
|
|
PASS: Gridarea.test 1 - gridarea global_5
|
|
PASS: Gridarea.test 2 - gridarea global_2
|
|
PASS: Gridarea.test 3 - gridarea global_1
|
|
PASS: Gridarea.test 4 - gridarea global_.5
|
|
PASS: Gridarea.test 5 - gridarea n32
|
|
PASS: Gridarea.test 6 - gridarea n80
|
|
PASS: Gridarea.test 7 - gridarea n160
|
|
PASS: Detrend.test 1 - detrend
|
|
PASS: Detrend.test 2 - trend/subtrend
|
|
PASS: Genweights.test 1 - genbil n16 regular
|
|
PASS: Genweights.test 2 - genbic n16 regular
|
|
PASS: Genweights.test 3 - gencon n16 regular
|
|
PASS: Genweights.test 4 - genycon n16 regular
|
|
PASS: Genweights.test 5 - genbil n32 regular
|
|
PASS: Genweights.test 6 - genbic n32 regular
|
|
PASS: Genweights.test 7 - gencon n32 regular
|
|
PASS: Genweights.test 8 - genycon n32 regular
|
|
PASS: Genweights.test 9 - genbil n16 curvilinear
|
|
PASS: Genweights.test 10 - genbic n16 curvilinear
|
|
PASS: Genweights.test 11 - gencon n16 curvilinear
|
|
PASS: Genweights.test 12 - genycon n16 curvilinear
|
|
PASS: Genweights.test 13 - genbil n32 curvilinear
|
|
PASS: Genweights.test 14 - genbic n32 curvilinear
|
|
PASS: Genweights.test 15 - gencon n32 curvilinear
|
|
PASS: Genweights.test 16 - genycon n32 curvilinear
|
|
PASS: Genweights.test 17 - gencon n16 unstructured
|
|
PASS: Genweights.test 18 - genycon n16 unstructured
|
|
PASS: Genweights.test 19 - gencon n32 unstructured
|
|
PASS: Genweights.test 20 - genycon n32 unstructured
|
|
PASS: Remap.test 1 - remapbil n16 regular
|
|
PASS: Remap.test 2 - remapbic n16 regular
|
|
PASS: Remap.test 3 - remapcon n16 regular
|
|
PASS: Remap.test 4 - remapycon n16 regular
|
|
PASS: Remap.test 5 - remapbil n32 regular
|
|
PASS: Remap.test 6 - remapbic n32 regular
|
|
PASS: Remap.test 7 - remapcon n32 regular
|
|
PASS: Remap.test 8 - remapycon n32 regular
|
|
PASS: Remap.test 9 - remapbil n16 curvilinear
|
|
PASS: Remap.test 10 - remapbic n16 curvilinear
|
|
PASS: Remap.test 11 - remapcon n16 curvilinear
|
|
PASS: Remap.test 12 - remapycon n16 curvilinear
|
|
PASS: Remap.test 13 - remapbil n32 curvilinear
|
|
PASS: Remap.test 14 - remapbic n32 curvilinear
|
|
PASS: Remap.test 15 - remapcon n32 curvilinear
|
|
PASS: Remap.test 16 - remapycon n32 curvilinear
|
|
PASS: Remap.test 17 - remapcon n16 unstructured
|
|
PASS: Remap.test 18 - remapycon n16 unstructured
|
|
PASS: Remap.test 19 - remapcon n32 unstructured
|
|
PASS: Remap.test 20 - remapycon n32 unstructured
|
|
PASS: Select.test 1 - select
|
|
PASS: Select.test 2 - select
|
|
PASS: Select.test 3 - select
|
|
PASS: Select.test 4 - select
|
|
PASS: Select.test 5 - select
|
|
PASS: Select.test 6 - delete
|
|
PASS: Select.test 7 - delete
|
|
PASS: Select.test 8 - delete
|
|
PASS: Spectral.test 1 - gp2sp
|
|
PASS: Spectral.test 2 - sp2gp
|
|
PASS: Spectral.test 3 - gp2spl
|
|
PASS: Spectral.test 4 - sp2gpl
|
|
PASS: Ymonstat.test 1 - ymonmin
|
|
PASS: Ymonstat.test 2 - ymonmax
|
|
PASS: Ymonstat.test 3 - ymonsum
|
|
PASS: Ymonstat.test 4 - ymonavg
|
|
PASS: Ymonstat.test 5 - ymonmean
|
|
PASS: Ymonstat.test 6 - ymonstd
|
|
PASS: Ymonstat.test 7 - ymonstd1
|
|
PASS: Ymonstat.test 8 - ymonvar
|
|
PASS: Ymonstat.test 9 - ymonvar1
|
|
PASS: Timstat.test 1 - timmin
|
|
PASS: Timstat.test 2 - timmax
|
|
PASS: Timstat.test 3 - timsum
|
|
PASS: Timstat.test 4 - timavg
|
|
PASS: Timstat.test 5 - timmean
|
|
PASS: Timstat.test 6 - timstd
|
|
PASS: Timstat.test 7 - timstd1
|
|
PASS: Timstat.test 8 - timvar
|
|
PASS: Timstat.test 9 - timvar1
|
|
PASS: Ensstat.test 1 - ensmin
|
|
PASS: Ensstat.test 2 - ensmax
|
|
PASS: Ensstat.test 3 - enssum
|
|
PASS: Ensstat.test 4 - ensavg
|
|
PASS: Ensstat.test 5 - ensmean
|
|
PASS: Ensstat.test 6 - ensstd
|
|
PASS: Ensstat.test 7 - ensstd1
|
|
PASS: Ensstat.test 8 - ensvar
|
|
PASS: Ensstat.test 9 - ensvar1
|
|
PASS: Enspctl.test 1 - enspctl
|
|
PASS: Fldstat.test 1 - fldmin
|
|
PASS: Fldstat.test 2 - fldmax
|
|
PASS: Fldstat.test 3 - fldsum
|
|
PASS: Fldstat.test 4 - fldavg
|
|
PASS: Fldstat.test 5 - fldmean
|
|
PASS: Fldstat.test 6 - fldstd
|
|
PASS: Fldstat.test 7 - fldstd1
|
|
PASS: Fldstat.test 8 - fldvar
|
|
PASS: Fldstat.test 9 - fldvar1
|
|
PASS: Fldpctl.test 1 - fldpctl
|
|
PASS: Vertint.test 1 - ml2pl
|
|
PASS: Afterburner.test 1 - TYPE=20 FORMAT=1
|
|
PASS: Arith.test 1 - add
|
|
PASS: Arith.test 2 - sub
|
|
PASS: Arith.test 3 - mul
|
|
PASS: Arith.test 4 - div
|
|
PASS: Expr.test 1 - instruction set 1
|
|
PASS: Expr.test 2 - instruction set 2
|
|
PASS: Gradsdes.test 1 - gradsdes GRIB1
|
|
PASS: Collgrid.test 1 - regular 4,3
|
|
PASS: Collgrid.test 2 - regular 12,1
|
|
PASS: Collgrid.test 3 - regular 1,6
|
|
PASS: Collgrid.test 4 - generic 4,3
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PASS: Collgrid.test 5 - generic 12,1
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PASS: Collgrid.test 6 - generic 1,6
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PASS: Collgrid.test 7 - curvilinear 4,3
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PASS: Collgrid.test 8 - curvilinear 12,1
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PASS: Collgrid.test 9 - curvilinear 1,6
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PASS: MapReduce.test 1 - reducegrid on grid r18x9
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PASS: MapReduce.test 2 - reducegrid on grid icon_cell
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PASS: Ninfo.test 1 - ngridpoints on grid r18x9
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PASS: Ninfo.test 2 - ngridpoints on grid ni4
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PASS: Ninfo.test 3 - ngridpoints on grid ni96
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PASS: Ninfo.test 4 - ngridpoints on grid global_10
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PASS: Ninfo.test 5 - ngridpoints on grid t63grid
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PASS: Ninfo.test 6 - ngridpoints on grid t63grid
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PASS: Ninfo.test 7 - ../src/cdo -O -s -ngrids -topo,r1x1
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PASS: Ninfo.test 8 - ../src/cdo -O -s -ngrids -topo,global_1
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PASS: Ninfo.test 9 - ../src/cdo -O -s -ngrids temp.2grids
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make[4]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
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make[4]: Nothing to be done for `all'.
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make[4]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
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============================================================================
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Testsuite summary for cdo 1.7.2rc5
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============================================================================
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# TOTAL: 170
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# PASS: 169
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# SKIP: 0
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# XFAIL: 0
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# FAIL: 1
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# XPASS: 0
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# ERROR: 0
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============================================================================
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See test/test-suite.log
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Please report to http://mpimet.mpg.de/cdo
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============================================================================
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make[3]: *** [test-suite.log] Error 1
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make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
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make[2]: *** [check-TESTS] Error 2
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make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
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make[1]: *** [check-am] Error 2
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make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
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make: *** [check-recursive] Error 1
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You have mail in /var/spool/mail/awips
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