Configuration completed.

    You can now say 'make' to compile the CDI package and 'make install' to install it afterwards.

configure: CDO is configured with the following options:
{
   "CC"                 : "gcc -std=gnu99",
   "CPP"                : "gcc -E",
   "CPPFLAGS"           : "-I/opt/cdo-install/include -I/opt/cdo-install/include -I/opt/cdo-install/include ",
   "CFLAGS"             : "-fPIC -fopenmp ",
   "LDFLAGS"            : "-L/opt/cdo-install/lib -L/opt/cdo-install/lib -L/opt/cdo-install/lib ",
   "LIBS"               : "-lgrib_api -lnetcdf -lhdf5_hl -lhdf5  -lm ",
   "FCFLAGS"            : "",
   "INCLUDES"           : "@INCLUDES@",
   "LD"                 : "/usr/bin/ld -m elf_x86_64",
   "NM"                 : "/usr/bin/nm -B",
   "AR"                 : "ar",
   "AS"                 : "as",
   "DLLTOOL"            : "false",
   "OBJDUMP"            : "objdump",
   "STRIP"              : "strip",
   "RANLIB"             : "ranlib",
   "INSTALL"            : "/usr/bin/install -c",
   "cdi"                : {
     "enable_cdi_lib" : false
   },
  "threads"    : {
    "lib"      : "",
    "include"  : ""
  "szlib"      : {
    "lib"      : "",
    "include"  : ""
  },
  "hdf5"       : {
    "lib"      : " -L/opt/cdo-install/lib -lhdf5",
    "include"  : " -I/opt/cdo-install/include"
  },
  "netcdf"     : {
    "lib"      : " -L/opt/cdo-install/lib -lnetcdf",
    "include"  : " -I/opt/cdo-install/include"
  },
  "udunits2"   : {
    "lib"      : "",
    "include"  : ""
  },
  "proj"       : {
    "lib"      : "",
    "include"  : ""
  },
  "magics"       : {
    "lib"      : "",
    "include"  : ""
  },
  "USER_NAME"          : "awips",
  "HOST_NAME"          : "justin",
  "SYSTEM_TYPE"        : "x86_64-unknown-linux-gnu"
}
configure:

  Configuration completed.

    You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.

You have mail in /var/spool/mail/awips
[awips@justin cdo-1.7.2rc5]$ make && make check && make install
Making all in libcdi
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
Making all in src
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
make  all-am
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
Making all in interfaces
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
Making all in app
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
Making all in examples
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
Making all in examples/pio
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
Making all in tests
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
Making all in src
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
make  all-am
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
Making all in contrib
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
if (hash ruby &> /dev/null) ; then \
	  ruby -KN ./makecompl.rb -o cdoCompletion; \
	fi
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
Making all in test/data
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
Making all in test
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5'
make[1]: Nothing to be done for `all-am'.
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5'
Making check in libcdi
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
Making check in src
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/src'
Making check in interfaces
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/interfaces'
Making check in app
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/app'
Making check in examples
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples'
Making check in examples/pio
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/examples/pio'
Making check in tests
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make  cksum_verify test_grib cksum_write cksum_read pio_write test_resource_copy cksum_write_chunk pio_write_deco2d test_table test_byteswap test_cdf_write test_cdf_read 
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make[3]: `cksum_verify' is up to date.
make[3]: `test_grib' is up to date.
make[3]: `cksum_write' is up to date.
make[3]: `cksum_read' is up to date.
make[3]: `pio_write' is up to date.
make[3]: `test_resource_copy' is up to date.
make[3]: `cksum_write_chunk' is up to date.
make[3]: `pio_write_deco2d' is up to date.
make[3]: `test_table' is up to date.
make[3]: `test_byteswap' is up to date.
make[3]: `test_cdf_write' is up to date.
make[3]: `test_cdf_read' is up to date.
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make  check-TESTS
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
PASS: cksum_verify
PASS: test_cksum_grib
PASS: test_cksum_nc
PASS: test_cksum_extra
PASS: test_cksum_service
PASS: test_cksum_nc2
PASS: test_cksum_nc4
PASS: test_cksum_ieg
PASS: test_chunk_cksum
PASS: pio_write_run
SKIP: pio_cksum_mpinonb
SKIP: pio_cksum_fpguard
SKIP: pio_cksum_asynch
SKIP: pio_cksum_writer
SKIP: pio_cksum_cdf
SKIP: pio_cksum_mpi_fw_ordered
SKIP: pio_cksum_mpi_fw_at_all
SKIP: pio_cksum_mpi_fw_at_reblock
PASS: test_resource_copy
PASS: pio_write_deco2d_run
SKIP: test_f2003
PASS: test_cdf_transformation
PASS: test_table
PASS: test_byteswap
======================
All 15 tests passed
(9 tests were not run)
======================
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi/tests'
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/libcdi'
Making check in src
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/src'
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/src'
Making check in contrib
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
if (hash ruby &> /dev/null) ; then \
	  ruby -KN ./makecompl.rb -o cdoCompletion; \
	fi
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/contrib'
Making check in test/data
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test/data'
Making check in test
make[1]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make  check-TESTS
make[2]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[3]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
PASS: threads.test 1 - chaining set 1
PASS: tsformat.test 1 - chaining set 1 with SERVICE
PASS: tsformat.test 2 - chaining set 1 with EXTRA
PASS: tsformat.test 3 - chaining set 1 with IEG
PASS: tsformat.test 4 - chaining set 1 with GRIB
PASS: tsformat.test 5 - chaining set 1 with GRIB_API
PASS: tsformat.test 6 - chaining set 1 with netCDF
PASS: tsformat.test 7 - chaining set 1 with netCDF2
FAIL: tsformat.test 8 - chaining set 1 with netCDF4                          <<< Any Thoughts?
PASS: wildcard.test 1 - 'testfile01'
PASS: File.test 1 - write srv
PASS: File.test 2 - write ext
PASS: File.test 3 - write ieg
PASS: File.test 4 - write grb
PASS: File.test 5 - write grb2
PASS: File.test 6 - write nc
PASS: File.test 7 - write nc2
PASS: File.test 8 - write nc4
PASS: File.test 9 - copy srv
PASS: File.test 10 - copy ext
PASS: File.test 11 - copy ieg
PASS: File.test 12 - copy grb
PASS: File.test 13 - copy grb2
PASS: File.test 14 - copy nc
PASS: File.test 15 - copy nc2
PASS: File.test 16 - copy nc4
PASS: Read_grib.test 1 - sinfo testfile01
PASS: Read_grib.test 2 - sinfo testfile02
PASS: Read_grib.test 3 - sinfo testfile03
PASS: Read_grib.test 4 - info testfile01
PASS: Read_grib.test 5 - info testfile02
PASS: Read_grib.test 6 - info testfile03
PASS: Read_netcdf.test 1 - sinfon testfile01
PASS: Read_netcdf.test 2 - sinfon testfile02
PASS: Read_netcdf.test 3 - infon testfile01
PASS: Read_netcdf.test 4 - infon testfile02
PASS: Copy_netcdf.test 1 - copy datar.nc
PASS: Copy_netcdf.test 2 - copy datag.nc
PASS: Copy_netcdf.test 3 - copy datac.nc
PASS: Copy_netcdf.test 4 - copy datau.nc
PASS: Copy_netcdf.test 5 - copy testfile01c.nc
PASS: Cat.test 1 - cat
PASS: Gridarea.test 1 - gridarea global_5
PASS: Gridarea.test 2 - gridarea global_2
PASS: Gridarea.test 3 - gridarea global_1
PASS: Gridarea.test 4 - gridarea global_.5
PASS: Gridarea.test 5 - gridarea n32
PASS: Gridarea.test 6 - gridarea n80
PASS: Gridarea.test 7 - gridarea n160
PASS: Detrend.test 1 - detrend
PASS: Detrend.test 2 - trend/subtrend
PASS: Genweights.test 1 - genbil n16 regular
PASS: Genweights.test 2 - genbic n16 regular
PASS: Genweights.test 3 - gencon n16 regular
PASS: Genweights.test 4 - genycon n16 regular
PASS: Genweights.test 5 - genbil n32 regular
PASS: Genweights.test 6 - genbic n32 regular
PASS: Genweights.test 7 - gencon n32 regular
PASS: Genweights.test 8 - genycon n32 regular
PASS: Genweights.test 9 - genbil n16 curvilinear
PASS: Genweights.test 10 - genbic n16 curvilinear
PASS: Genweights.test 11 - gencon n16 curvilinear
PASS: Genweights.test 12 - genycon n16 curvilinear
PASS: Genweights.test 13 - genbil n32 curvilinear
PASS: Genweights.test 14 - genbic n32 curvilinear
PASS: Genweights.test 15 - gencon n32 curvilinear
PASS: Genweights.test 16 - genycon n32 curvilinear
PASS: Genweights.test 17 - gencon n16 unstructured
PASS: Genweights.test 18 - genycon n16 unstructured
PASS: Genweights.test 19 - gencon n32 unstructured
PASS: Genweights.test 20 - genycon n32 unstructured
PASS: Remap.test 1 - remapbil n16 regular
PASS: Remap.test 2 - remapbic n16 regular
PASS: Remap.test 3 - remapcon n16 regular
PASS: Remap.test 4 - remapycon n16 regular
PASS: Remap.test 5 - remapbil n32 regular
PASS: Remap.test 6 - remapbic n32 regular
PASS: Remap.test 7 - remapcon n32 regular
PASS: Remap.test 8 - remapycon n32 regular
PASS: Remap.test 9 - remapbil n16 curvilinear
PASS: Remap.test 10 - remapbic n16 curvilinear
PASS: Remap.test 11 - remapcon n16 curvilinear
PASS: Remap.test 12 - remapycon n16 curvilinear
PASS: Remap.test 13 - remapbil n32 curvilinear
PASS: Remap.test 14 - remapbic n32 curvilinear
PASS: Remap.test 15 - remapcon n32 curvilinear
PASS: Remap.test 16 - remapycon n32 curvilinear
PASS: Remap.test 17 - remapcon n16 unstructured
PASS: Remap.test 18 - remapycon n16 unstructured
PASS: Remap.test 19 - remapcon n32 unstructured
PASS: Remap.test 20 - remapycon n32 unstructured
PASS: Select.test 1 - select
PASS: Select.test 2 - select
PASS: Select.test 3 - select
PASS: Select.test 4 - select
PASS: Select.test 5 - select
PASS: Select.test 6 - delete
PASS: Select.test 7 - delete
PASS: Select.test 8 - delete
PASS: Spectral.test 1 - gp2sp
PASS: Spectral.test 2 - sp2gp
PASS: Spectral.test 3 - gp2spl
PASS: Spectral.test 4 - sp2gpl
PASS: Ymonstat.test 1 - ymonmin
PASS: Ymonstat.test 2 - ymonmax
PASS: Ymonstat.test 3 - ymonsum
PASS: Ymonstat.test 4 - ymonavg
PASS: Ymonstat.test 5 - ymonmean
PASS: Ymonstat.test 6 - ymonstd
PASS: Ymonstat.test 7 - ymonstd1
PASS: Ymonstat.test 8 - ymonvar
PASS: Ymonstat.test 9 - ymonvar1
PASS: Timstat.test 1 - timmin
PASS: Timstat.test 2 - timmax
PASS: Timstat.test 3 - timsum
PASS: Timstat.test 4 - timavg
PASS: Timstat.test 5 - timmean
PASS: Timstat.test 6 - timstd
PASS: Timstat.test 7 - timstd1
PASS: Timstat.test 8 - timvar
PASS: Timstat.test 9 - timvar1
PASS: Ensstat.test 1 - ensmin
PASS: Ensstat.test 2 - ensmax
PASS: Ensstat.test 3 - enssum
PASS: Ensstat.test 4 - ensavg
PASS: Ensstat.test 5 - ensmean
PASS: Ensstat.test 6 - ensstd
PASS: Ensstat.test 7 - ensstd1
PASS: Ensstat.test 8 - ensvar
PASS: Ensstat.test 9 - ensvar1
PASS: Enspctl.test 1 - enspctl
PASS: Fldstat.test 1 - fldmin
PASS: Fldstat.test 2 - fldmax
PASS: Fldstat.test 3 - fldsum
PASS: Fldstat.test 4 - fldavg
PASS: Fldstat.test 5 - fldmean
PASS: Fldstat.test 6 - fldstd
PASS: Fldstat.test 7 - fldstd1
PASS: Fldstat.test 8 - fldvar
PASS: Fldstat.test 9 - fldvar1
PASS: Fldpctl.test 1 - fldpctl
PASS: Vertint.test 1 - ml2pl
PASS: Afterburner.test 1 - TYPE=20 FORMAT=1
PASS: Arith.test 1 - add
PASS: Arith.test 2 - sub
PASS: Arith.test 3 - mul
PASS: Arith.test 4 - div
PASS: Expr.test 1 - instruction set 1
PASS: Expr.test 2 - instruction set 2
PASS: Gradsdes.test 1 - gradsdes GRIB1
PASS: Collgrid.test 1 - regular 4,3
PASS: Collgrid.test 2 - regular 12,1
PASS: Collgrid.test 3 - regular 1,6
PASS: Collgrid.test 4 - generic 4,3
PASS: Collgrid.test 5 - generic 12,1
PASS: Collgrid.test 6 - generic 1,6
PASS: Collgrid.test 7 - curvilinear 4,3
PASS: Collgrid.test 8 - curvilinear 12,1
PASS: Collgrid.test 9 - curvilinear 1,6
PASS: MapReduce.test 1 - reducegrid on grid r18x9
PASS: MapReduce.test 2 - reducegrid on grid icon_cell
PASS: Ninfo.test 1 - ngridpoints on grid r18x9
PASS: Ninfo.test 2 - ngridpoints on grid ni4
PASS: Ninfo.test 3 - ngridpoints on grid ni96
PASS: Ninfo.test 4 - ngridpoints on grid global_10
PASS: Ninfo.test 5 - ngridpoints on grid t63grid
PASS: Ninfo.test 6 - ngridpoints on grid t63grid
PASS: Ninfo.test 7 - ../src/cdo -O -s -ngrids -topo,r1x1
PASS: Ninfo.test 8 - ../src/cdo -O -s -ngrids -topo,global_1
PASS: Ninfo.test 9 - ../src/cdo -O -s -ngrids temp.2grids
make[4]: Entering directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
============================================================================
Testsuite summary for cdo 1.7.2rc5
============================================================================
# TOTAL: 170
# PASS:  169
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0
============================================================================
See test/test-suite.log
Please report to http://mpimet.mpg.de/cdo
============================================================================
make[3]: *** [test-suite.log] Error 1
make[3]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[2]: *** [check-TESTS] Error 2
make[2]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/opt/cdo-install/cdo-1.7.2rc5/test'
make: *** [check-recursive] Error 1
You have mail in /var/spool/mail/awips