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Build with cmor2 ยป config.log

configuration log - Kostas S, 2016-04-20 12:13

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.7.2rc2, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --prefix=/usr/local --with-zlib=/usr --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-fftw3 --with-proj=/usr/local --with-udunits2=/usr/local --with-magics=/usr/local --with-xml2=/usr --with-threads=/usr --with-grib_api=/usr/local --with-curl=/usr LIBS=-lstdc++ CFLAGS=-fopenmp --with-cmor=/usr/local

## --------- ##
## Platform. ##
## --------- ##

hostname = diogenis.hydromech.tuc.gr
uname -m = x86_64
uname -r = 2.6.32-573.22.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Wed Mar 23 03:35:39 UTC 2016

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2620: checking build system type
configure:2634: result: x86_64-unknown-linux-gnu
configure:2654: checking host system type
configure:2667: result: x86_64-unknown-linux-gnu
configure:2706: checking for a BSD-compatible install
configure:2774: result: /usr/bin/install -c
configure:2785: checking whether build environment is sane
configure:2840: result: yes
configure:2991: checking for a thread-safe mkdir -p
configure:3030: result: /bin/mkdir -p
configure:3037: checking for gawk
configure:3053: found /bin/gawk
configure:3064: result: gawk
configure:3075: checking whether make sets $(MAKE)
configure:3097: result: yes
configure:3126: checking whether make supports nested variables
configure:3143: result: yes
configure:3272: checking whether to enable maintainer-specific portions of Makefiles
configure:3281: result: no
configure:3308: checking for style of include used by make
configure:3336: result: GNU
configure:3407: checking for gcc
configure:3423: found /usr/bin/gcc
configure:3434: result: gcc
configure:3663: checking for C compiler version
configure:3672: gcc --version >&5
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3683: $? = 0
configure:3672: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC)
configure:3683: $? = 0
configure:3672: gcc -V >&5
gcc: '-V' option must have argument
configure:3683: $? = 1
configure:3672: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3683: $? = 1
configure:3703: checking whether the C compiler works
configure:3725: gcc -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:3729: $? = 0
configure:3777: result: yes
configure:3780: checking for C compiler default output file name
configure:3782: result: a.out
configure:3788: checking for suffix of executables
configure:3795: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:3799: $? = 0
configure:3821: result:
configure:3843: checking whether we are cross compiling
configure:3851: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:3855: $? = 0
configure:3862: ./conftest
configure:3866: $? = 0
configure:3881: result: no
configure:3886: checking for suffix of object files
configure:3908: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:3912: $? = 0
configure:3933: result: o
configure:3937: checking whether we are using the GNU C compiler
configure:3956: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:3956: $? = 0
configure:3965: result: yes
configure:3974: checking whether gcc accepts -g
configure:3994: gcc -c -g -I/usr/local/include conftest.c >&5
configure:3994: $? = 0
configure:4035: result: yes
configure:4052: checking for gcc option to accept ISO C89
configure:4115: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:4115: $? = 0
configure:4128: result: none needed
configure:4153: checking whether gcc understands -c and -o together
configure:4175: gcc -c conftest.c -o conftest2.o
configure:4178: $? = 0
configure:4175: gcc -c conftest.c -o conftest2.o
configure:4178: $? = 0
configure:4190: result: yes
configure:4209: checking dependency style of gcc
configure:4320: result: gcc3
configure:4385: checking for ar
configure:4401: found /usr/bin/ar
configure:4412: result: ar
configure:4438: checking the archiver (ar) interface
configure:4454: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:4454: $? = 0
configure:4456: ar cru libconftest.a conftest.o >&5
configure:4459: $? = 0
configure:4487: result: ar
configure:4508: setting up libtool
configure:4556: checking how to print strings
configure:4583: result: printf
configure:4604: checking for a sed that does not truncate output
configure:4668: result: /bin/sed
configure:4686: checking for grep that handles long lines and -e
configure:4744: result: /bin/grep
configure:4749: checking for egrep
configure:4811: result: /bin/grep -E
configure:4816: checking for fgrep
configure:4878: result: /bin/grep -F
configure:4913: checking for ld used by gcc
configure:4980: result: /usr/bin/ld
configure:4987: checking if the linker (/usr/bin/ld) is GNU ld
configure:5002: result: yes
configure:5014: checking for BSD- or MS-compatible name lister (nm)
configure:5063: result: /usr/bin/nm -B
configure:5193: checking the name lister (/usr/bin/nm -B) interface
configure:5200: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:5203: /usr/bin/nm -B "conftest.o"
configure:5206: output
0000000000000000 B some_variable
configure:5213: result: BSD nm
configure:5216: checking whether ln -s works
configure:5220: result: yes
configure:5228: checking the maximum length of command line arguments
configure:5358: result: 1966080
configure:5375: checking whether the shell understands some XSI constructs
configure:5385: result: yes
configure:5389: checking whether the shell understands "+="
configure:5395: result: yes
configure:5430: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:5470: result: func_convert_file_noop
configure:5477: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:5497: result: func_convert_file_noop
configure:5504: checking for /usr/bin/ld option to reload object files
configure:5511: result: -r
configure:5585: checking for objdump
configure:5601: found /usr/bin/objdump
configure:5612: result: objdump
configure:5644: checking how to recognize dependent libraries
configure:5846: result: pass_all
configure:5931: checking for dlltool
configure:5961: result: no
configure:5991: checking how to associate runtime and link libraries
configure:6018: result: printf %s\n
configure:6142: checking for archiver @FILE support
configure:6159: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:6159: $? = 0
configure:6162: ar cru libconftest.a @conftest.lst >&5
configure:6165: $? = 0
configure:6170: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6173: $? = 1
configure:6185: result: @
configure:6243: checking for strip
configure:6259: found /usr/bin/strip
configure:6270: result: strip
configure:6342: checking for ranlib
configure:6358: found /usr/bin/ranlib
configure:6369: result: ranlib
configure:6471: checking command to parse /usr/bin/nm -B output from gcc object
configure:6591: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:6594: $? = 0
configure:6598: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6601: $? = 0
configure:6667: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c conftstm.o >&5
configure:6670: $? = 0
configure:6708: result: ok
configure:6745: checking for sysroot
configure:6775: result: no
configure:6852: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:6855: $? = 0
configure:7031: checking for mt
configure:7061: result: no
configure:7081: checking if : is a manifest tool
configure:7087: : '-?'
configure:7095: result: no
configure:7737: checking how to run the C preprocessor
configure:7768: gcc -E -I/usr/local/include conftest.c
configure:7768: $? = 0
configure:7782: gcc -E -I/usr/local/include conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:7782: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7807: result: gcc -E
configure:7827: gcc -E -I/usr/local/include conftest.c
configure:7827: $? = 0
configure:7841: gcc -E -I/usr/local/include conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:7841: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7870: checking for ANSI C header files
configure:7890: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7890: $? = 0
configure:7963: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:7963: $? = 0
configure:7963: ./conftest
configure:7963: $? = 0
configure:7974: result: yes
configure:7987: checking for sys/types.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for sys/stat.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for stdlib.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for string.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for memory.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for strings.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for inttypes.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for stdint.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:7987: checking for unistd.h
configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:7987: $? = 0
configure:7987: result: yes
configure:8001: checking for dlfcn.h
configure:8001: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:8001: $? = 0
configure:8001: result: yes
configure:8207: checking for objdir
configure:8222: result: .libs
configure:8493: checking if gcc supports -fno-rtti -fno-exceptions
configure:8511: gcc -c -fopenmp -I/usr/local/include -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:8515: $? = 0
configure:8528: result: no
configure:8855: checking for gcc option to produce PIC
configure:8862: result: -fPIC -DPIC
configure:8870: checking if gcc PIC flag -fPIC -DPIC works
configure:8888: gcc -c -fopenmp -I/usr/local/include -fPIC -DPIC -DPIC conftest.c >&5
configure:8892: $? = 0
configure:8905: result: yes
configure:8934: checking if gcc static flag -static works
configure:8962: result: no
configure:8977: checking if gcc supports -c -o file.o
configure:8998: gcc -c -fopenmp -I/usr/local/include -o out/conftest2.o conftest.c >&5
configure:9002: $? = 0
configure:9024: result: yes
configure:9032: checking if gcc supports -c -o file.o
configure:9079: result: yes
configure:9112: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10265: result: yes
configure:10302: checking whether -lc should be explicitly linked in
configure:10310: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
configure:10313: $? = 0
configure:10328: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10331: $? = 0
configure:10345: result: no
configure:10505: checking dynamic linker characteristics
configure:11016: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5
configure:11016: $? = 0
configure:11238: result: GNU/Linux ld.so
configure:11345: checking how to hardcode library paths into programs
configure:11370: result: immediate
configure:11910: checking whether stripping libraries is possible
configure:11915: result: yes
configure:11950: checking if libtool supports shared libraries
configure:11952: result: yes
configure:11955: checking whether to build shared libraries
configure:11976: result: yes
configure:11979: checking whether to build static libraries
configure:11983: result: yes
configure:12065: checking for gcc
configure:12092: result: gcc
configure:12157: checking for g++
configure:12173: found /usr/bin/g++
configure:12184: result: g++
configure:12206: checking for gcc option to accept ISO C99
configure:12355: gcc -c -fopenmp -I/usr/local/include conftest.c >&5
conftest.c:74: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:128: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:128: error: 'newvar' undeclared (first use in this function)
conftest.c:128: error: (Each undeclared identifier is reported only once
conftest.c:128: error: for each function it appears in.)
conftest.c:138: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:138: note: use option -std=c99 or -std=gnu99 to compile your code
configure:12355: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:12355: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:12355: $? = 0
configure:12375: result: -std=gnu99
configure:12384: checking for C/C++ restrict keyword
configure:12409: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:12409: $? = 0
configure:12417: result: __restrict
configure:12438: checking for gcc -std=gnu99 option to support OpenMP
configure:12453: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:12453: $? = 0
configure:12485: result: none needed
configure:12539: checking for ar
configure:12566: result: ar
configure:12723: checking for ld
configure:12750: result: /usr/bin/ld -m elf_x86_64
configure:12815: checking for nm
configure:12842: result: /usr/bin/nm -B
configure:12907: checking for ar
configure:12934: result: ar
configure:12999: checking for as
configure:13015: found /usr/bin/as
configure:13026: result: as
configure:13091: checking for dlltool
configure:13118: result: false
configure:13183: checking for objdump
configure:13210: result: objdump
configure:13275: checking for strip
configure:13302: result: strip
configure:13367: checking for ranlib
configure:13394: result: ranlib
configure:13529: checking for C++ compiler version
configure:13538: g++ --version >&5
g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13549: $? = 0
configure:13538: g++ -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC)
configure:13549: $? = 0
configure:13538: g++ -V >&5
g++: '-V' option must have argument
configure:13549: $? = 1
configure:13538: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:13549: $? = 1
configure:13553: checking whether we are using the GNU C++ compiler
configure:13572: g++ -c -I/usr/local/include conftest.cpp >&5
configure:13572: $? = 0
configure:13581: result: yes
configure:13590: checking whether g++ accepts -g
configure:13610: g++ -c -g -I/usr/local/include conftest.cpp >&5
configure:13610: $? = 0
configure:13651: result: yes
configure:13676: checking dependency style of g++
configure:13787: result: gcc3
configure:13820: checking how to run the C++ preprocessor
configure:13847: g++ -E -I/usr/local/include conftest.cpp
configure:13847: $? = 0
configure:13861: g++ -E -I/usr/local/include conftest.cpp
conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory
configure:13861: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13886: result: g++ -E
configure:13906: g++ -E -I/usr/local/include conftest.cpp
configure:13906: $? = 0
configure:13920: g++ -E -I/usr/local/include conftest.cpp
conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory
configure:13920: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:14089: checking for ld used by g++
configure:14156: result: /usr/bin/ld -m elf_x86_64
configure:14163: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:14178: result: yes
configure:14233: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15238: result: yes
configure:15274: g++ -c -g -O2 -I/usr/local/include conftest.cpp >&5
configure:15277: $? = 0
configure:15797: checking for g++ option to produce PIC
configure:15804: result: -fPIC -DPIC
configure:15812: checking if g++ PIC flag -fPIC -DPIC works
configure:15830: g++ -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15834: $? = 0
configure:15847: result: yes
configure:15870: checking if g++ static flag -static works
configure:15898: result: no
configure:15910: checking if g++ supports -c -o file.o
configure:15931: g++ -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.cpp >&5
configure:15935: $? = 0
configure:15957: result: yes
configure:15962: checking if g++ supports -c -o file.o
configure:16009: result: yes
configure:16039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:16075: result: yes
configure:16216: checking dynamic linker characteristics
configure:16883: result: GNU/Linux ld.so
configure:16936: checking how to hardcode library paths into programs
configure:16961: result: immediate
configure:17013: checking for special C compiler options needed for large files
configure:17058: result: no
configure:17064: checking for _FILE_OFFSET_BITS value needed for large files
configure:17089: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17089: $? = 0
configure:17121: result: no
configure:17214: checking for stdlib.h
configure:17214: result: yes
configure:17214: checking for unistd.h
configure:17214: result: yes
configure:17214: checking for sys/param.h
configure:17214: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17214: $? = 0
configure:17214: result: yes
configure:17234: checking for getpagesize
configure:17234: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17234: $? = 0
configure:17234: result: yes
configure:17243: checking for working mmap
configure:17390: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17390: $? = 0
configure:17390: ./conftest
configure:17390: $? = 0
configure:17400: result: yes
configure:17411: checking for malloc in -lmalloc
configure:17436: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lmalloc -lstdc++ >&5
conftest.c:37: warning: conflicting types for built-in function 'malloc'
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:17436: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:17445: result: no
configure:17458: checking for struct stat.st_blksize
configure:17458: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17458: $? = 0
configure:17458: result: yes
configure:17472: checking sys/resource.h usability
configure:17472: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17472: $? = 0
configure:17472: result: yes
configure:17472: checking sys/resource.h presence
configure:17472: gcc -E -I/usr/local/include conftest.c
configure:17472: $? = 0
configure:17472: result: yes
configure:17472: checking for sys/resource.h
configure:17472: result: yes
configure:17484: checking sys/times.h usability
configure:17484: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17484: $? = 0
configure:17484: result: yes
configure:17484: checking sys/times.h presence
configure:17484: gcc -E -I/usr/local/include conftest.c
configure:17484: $? = 0
configure:17484: result: yes
configure:17484: checking for sys/times.h
configure:17484: result: yes
configure:17496: checking malloc.h usability
configure:17496: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17496: $? = 0
configure:17496: result: yes
configure:17496: checking malloc.h presence
configure:17496: gcc -E -I/usr/local/include conftest.c
configure:17496: $? = 0
configure:17496: result: yes
configure:17496: checking for malloc.h
configure:17496: result: yes
configure:17508: checking glob.h usability
configure:17508: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17508: $? = 0
configure:17508: result: yes
configure:17508: checking glob.h presence
configure:17508: gcc -E -I/usr/local/include conftest.c
configure:17508: $? = 0
configure:17508: result: yes
configure:17508: checking for glob.h
configure:17508: result: yes
configure:17520: checking fnmatch.h usability
configure:17520: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17520: $? = 0
configure:17520: result: yes
configure:17520: checking fnmatch.h presence
configure:17520: gcc -E -I/usr/local/include conftest.c
configure:17520: $? = 0
configure:17520: result: yes
configure:17520: checking for fnmatch.h
configure:17520: result: yes
configure:17532: checking wordexp.h usability
configure:17532: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17532: $? = 0
configure:17532: result: yes
configure:17532: checking wordexp.h presence
configure:17532: gcc -E -I/usr/local/include conftest.c
configure:17532: $? = 0
configure:17532: result: yes
configure:17532: checking for wordexp.h
configure:17532: result: yes
configure:17544: checking execinfo.h usability
configure:17544: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17544: $? = 0
configure:17544: result: yes
configure:17544: checking execinfo.h presence
configure:17544: gcc -E -I/usr/local/include conftest.c
configure:17544: $? = 0
configure:17544: result: yes
configure:17544: checking for execinfo.h
configure:17544: result: yes
configure:17558: checking for mallinfo
configure:17558: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17558: $? = 0
configure:17558: result: yes
configure:17569: checking for backtrace
configure:17569: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17569: $? = 0
configure:17569: result: yes
configure:17582: checking for getrlimit
configure:17582: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17582: $? = 0
configure:17582: result: yes
configure:17593: checking for gethostname
configure:17593: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5
configure:17593: $? = 0
configure:17593: result: yes
configure:17661: checking for floor in -lm
configure:17686: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5
conftest.c:53: warning: conflicting types for built-in function 'floor'
configure:17686: $? = 0
configure:17695: result: yes
configure:17708: checking whether isnan is declared
configure:17708: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17708: $? = 0
configure:17708: result: yes
configure:17723: checking for sqrtl
configure:17723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5
conftest.c:71: warning: conflicting types for built-in function 'sqrtl'
configure:17723: $? = 0
configure:17723: result: yes
configure:17734: checking for feenableexcept
configure:17734: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5
configure:17734: $? = 0
configure:17734: result: yes
configure:17744: checking for fenv_t.__control
configure:17744: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:56: error: 'fenv_t' has no member named '__control'
configure:17744: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:17744: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:56: error: 'fenv_t' has no member named '__control'
configure:17744: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (sizeof ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:17744: result: no
configure:17754: checking for fenv_t.__mxcsr
configure:17754: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5
configure:17754: $? = 0
configure:17754: result: yes
configure:17777: checking for DATA support
configure:17791: result:
configure:18276: checking pthread.h usability
configure:18276: gcc -std=gnu99 -c -fopenmp -I/usr/include -I/usr/local/include conftest.c >&5
configure:18276: $? = 0
configure:18276: result: yes
configure:18276: checking pthread.h presence
configure:18276: gcc -E -I/usr/include -I/usr/local/include conftest.c
configure:18276: $? = 0
configure:18276: result: yes
configure:18276: checking for pthread.h
configure:18276: result: yes
configure:18286: checking for pthread_create in -lpthread
configure:18311: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include -I/usr/local/include -L/usr/lib -L/usr/lical/lib conftest.c -lpthread -lm -lstdc++ >&5
configure:18311: $? = 0
configure:18320: result: yes
configure:18434: checking szlib.h usability
configure:18434: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5
configure:18434: $? = 0
configure:18434: result: yes
configure:18434: checking szlib.h presence
configure:18434: gcc -E -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c
configure:18434: $? = 0
configure:18434: result: yes
configure:18434: checking for szlib.h
configure:18434: result: yes
configure:18444: checking for library containing SZ_BufftoBuffCompress
configure:18475: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lpthread -lm -lstdc++ >&5
/tmp/ccpAWIr0.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `SZ_BufftoBuffCompress'
collect2: ld returned 1 exit status
configure:18475: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char SZ_BufftoBuffCompress ();
| int
| main ()
| {
| return SZ_BufftoBuffCompress ();
| ;
| return 0;
| }
configure:18475: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lsz -lpthread -lm -lstdc++ >&5
configure:18475: $? = 0
configure:18492: result: -lsz
configure:18682: checking hdf5.h usability
configure:18682: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5
configure:18682: $? = 0
configure:18682: result: yes
configure:18682: checking hdf5.h presence
configure:18682: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c
configure:18682: $? = 0
configure:18682: result: yes
configure:18682: checking for hdf5.h
configure:18682: result: yes
configure:18692: checking for library containing H5Fopen
configure:18723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lsz -lpthread -lm -lstdc++ >&5
/tmp/ccEPb4ak.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5Fopen'
collect2: ld returned 1 exit status
configure:18723: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:18723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
configure:18723: $? = 0
configure:18740: result: -lhdf5
configure:18752: checking for library containing H5DSis_scale
configure:18783: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/tmp/ccpmv29C.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5DSis_scale'
collect2: ld returned 1 exit status
configure:18783: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:18783: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
configure:18783: $? = 0
configure:18800: result: -lhdf5_hl
configure:19015: checking netcdf.h usability
configure:19015: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5
configure:19015: $? = 0
configure:19015: result: yes
configure:19015: checking netcdf.h presence
configure:19015: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c
configure:19015: $? = 0
configure:19015: result: yes
configure:19015: checking for netcdf.h
configure:19015: result: yes
configure:19025: checking for library containing nc_open
configure:19056: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/tmp/cc94FvHL.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:19056: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:19056: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
configure:19056: $? = 0
configure:19073: result: -lnetcdf
configure:19088: checking nc-config script
configure:19092: checking for nc-config
configure:19108: found /usr/local/bin/nc-config
configure:19119: result: /usr/local/bin/nc-config
configure:19128: checking netcdf's OpenDAP support
configure:19134: result: yes
configure:19140: checking netcdf's nc2 support
configure:19147: result: yes
configure:19153: checking netcdf's nc4 support
configure:19160: result: yes
configure:19166: checking netcdf's nc4/hdf5 support
configure:19173: result: yes
configure:19199: checking for library containing H5TS_mutex_lock
configure:19230: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/tmp/ccdWNNXi.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5TS_mutex_lock'
collect2: ld returned 1 exit status
configure:19230: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5TS_mutex_lock ();
| int
| main ()
| {
| return H5TS_mutex_lock ();
| ;
| return 0;
| }
configure:19230: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/tmp/ccd82TXA.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5TS_mutex_lock'
collect2: ld returned 1 exit status
configure:19230: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5TS_mutex_lock ();
| int
| main ()
| {
| return H5TS_mutex_lock ();
| ;
| return 0;
| }
configure:19247: result: no
configure:19358: checking for library containing cmor_load_table
configure:19389: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/tmp/cci5DQNQ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `cmor_load_table'
collect2: ld returned 1 exit status
configure:19389: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char cmor_load_table ();
| int
| main ()
| {
| return cmor_load_table ();
| ;
| return 0;
| }
configure:19389: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib conftest.c -lcmor -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5
/usr/local/lib/libcmor.a(cmor_grids.o): In function `cmor_convert_value':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:88: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:89: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:94: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:95: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:99: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:100: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:104: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:105: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor.o): In function `cmor_setup':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:779: undefined reference to `ut_free_system'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:781: undefined reference to `ut_ignore'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:781: undefined reference to `ut_set_error_message_handler'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:782: undefined reference to `ut_read_xml'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:783: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:787: undefined reference to `ut_ignore'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:787: undefined reference to `ut_set_error_message_handler'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:789: undefined reference to `ut_new_base_unit'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:790: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:794: undefined reference to `ut_map_name_to_unit'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:800: undefined reference to `ut_new_dimensionless_unit'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:801: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:805: undefined reference to `ut_map_name_to_unit'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:811: undefined reference to `ut_scale'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:816: undefined reference to `ut_map_name_to_unit'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:833: undefined reference to `uuid_create'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:834: undefined reference to `uuid_make'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:837: undefined reference to `uuid_export'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:840: undefined reference to `uuid_destroy'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:811: undefined reference to `ut_scale'
/usr/local/lib/libcmor.a(cmor.o): In function `cmor_prep_units':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:335: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:336: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:343: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:344: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:345: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:351: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:357: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:360: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor.o): In function `cmor_write':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3339: undefined reference to `uuid_create'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3340: undefined reference to `uuid_make'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3343: undefined reference to `uuid_export'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3349: undefined reference to `uuid_destroy'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2476: undefined reference to `uuid_create'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2477: undefined reference to `uuid_make'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2480: undefined reference to `uuid_export'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2484: undefined reference to `uuid_destroy'
/usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_convert_interval_to_seconds':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:46: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:47: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:67: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:69: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:70: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:74: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:80: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:81: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:85: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:86: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:90: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:91: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:95: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:96: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:100: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:101: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_check_interval':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:953: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:954: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:955: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:956: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:960: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:966: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:967: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:971: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:972: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:977: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:978: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:982: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:983: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:998: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:999: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1003: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1009: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1010: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1018: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1019: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1064: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1065: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1070: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1071: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1075: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1076: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_treat_axis_values':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:609: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:610: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:611: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:619: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:620: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:621: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:627: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:633: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:634: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:640: undefined reference to `cv_convert_doubles'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:642: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:648: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:649: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:654: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:655: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:659: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:660: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor_variables.o): In function `cmor_write_var_to_file':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1522: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1523: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1426: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1427: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1428: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1435: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1436: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1437: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1443: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1449: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1450: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1602: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1603: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1608: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1609: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1613: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1614: undefined reference to `ut_get_status'
/usr/local/lib/libcmor.a(cmor_variables.o): In function `cmor_zfactor':
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:454: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:456: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:457: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:458: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:462: undefined reference to `ut_are_convertible'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:468: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:469: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:474: undefined reference to `cv_convert_double'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:476: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:480: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:481: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:486: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:487: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:491: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:492: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:297: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:298: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:303: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:304: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:305: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:309: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:310: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:314: undefined reference to `cv_convert_doubles'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:315: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:319: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:320: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:324: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:325: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:329: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:330: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:392: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:393: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:398: undefined reference to `ut_trim'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:399: undefined reference to `ut_parse'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:400: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:404: undefined reference to `ut_get_converter'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:405: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:409: undefined reference to `cv_convert_doubles'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:410: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:414: undefined reference to `cv_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:415: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:420: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:421: undefined reference to `ut_get_status'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:425: undefined reference to `ut_free'
/home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:426: undefined reference to `ut_get_status'
collect2: ld returned 1 exit status
configure:19389: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc2"
| #define PACKAGE_STRING "cdo 1.7.2rc2"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc2"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBNC_DAP 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_NC4HDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char cmor_load_table ();
| int
| main ()
| {
| return cmor_load_table ();
| ;
| return 0;
| }
configure:19406: result: no
configure:19415: error: Could not link to cmor library!

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-fopenmp
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/usr/local/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/usr/lical/lib
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value=-lstdc++
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_backtrace=yes
ac_cv_func_feenableexcept=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_func_sqrtl=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_execinfo_h=yes
ac_cv_header_fnmatch_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_pthread_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_wordexp_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_lib_pthread_pthread_create=yes
ac_cv_member_fenv_t___control=no
ac_cv_member_fenv_t___mxcsr=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_NC_CONFIG=/usr/local/bin/nc-config
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp='none needed'
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_H5TS_mutex_lock=no
ac_cv_search_SZ_BufftoBuffCompress=-lsz
ac_cv_search_cmor_load_table=no
ac_cv_search_nc_open=-lnetcdf
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1966080
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing autoconf'
AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing autoheader'
AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing automake-1.15'
AWK='gawk'
BUILD_AVX2_TESTS_FALSE=''
BUILD_AVX2_TESTS_TRUE=''
BUILD_AVX_TESTS_FALSE=''
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE=''
BUILD_SSE42_TESTS_TRUE=''
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-fopenmp '
CLDFLAGS=''
CLIBS=''
CMOR_LIBS=''
CPP='gcc -E'
CPPFLAGS='-I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX=''
ENABLE_CXX=''
ENABLE_DATA=''
ENABLE_EXTRA=''
ENABLE_GRIB=''
ENABLE_GRIBAPI=''
ENABLE_IEG=''
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_NC2='yes'
ENABLE_NC4='yes'
ENABLE_NC4HDF5='yes'
ENABLE_NETCDF='yes'
ENABLE_SERVICE=''
ENABLE_THREADS='yes'
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HDF5_INCLUDE=' -I/usr/local/include'
HDF5_LIBS=' -L/usr/local/lib -lhdf5'
HDF5_ROOT='/usr/local'
HOST_NAME='diogenis.hydromech.tuc.gr'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib'
LIBOBJS=''
LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++'
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG='/usr/local/bin/nc-config'
NETCDF_INCLUDE=' -I/usr/local/include'
NETCDF_LIBS=' -L/usr/local/lib -lnetcdf'
NETCDF_ROOT='/usr/local'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS=''
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.7.2rc2'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.7.2rc2'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=' -I/usr/local/include'
SZLIB_LIBS=' -L/usr/local/lib -lsz'
THREADS_INCLUDE=' -I/usr/include'
THREADS_LIBS=' -L/usr/lib -lpthread'
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USER_NAME='kostas'
VERSION='1.7.2rc2'
XML2_LIBS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.7.2rc2"
#define PACKAGE_STRING "cdo 1.7.2rc2"
#define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
#define PACKAGE_URL ""
#define CDO "1.7.2rc2"
#define PACKAGE "cdo"
#define VERSION "1.7.2rc2"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define restrict __restrict
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_FNMATCH_H 1
#define HAVE_WORDEXP_H 1
#define HAVE_EXECINFO_H 1
#define HAVE_MALLINFO 1
#define HAVE_BACKTRACE 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
#define USER_NAME "kostas"
#define HOST_NAME "diogenis.hydromech.tuc.gr"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_DECL_ISNAN 1
#define HAVE_SQRTL 1
#define HAVE_FEENABLEEXCEPT 1
#define HAVE_FENV_T___MXCSR 1
#define ENABLE_DATA 1
#define HAVE_PTHREAD_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_LIBNC_DAP 1
#define HAVE_NETCDF2 1
#define HAVE_NETCDF4 1
#define HAVE_NC4HDF5 1

configure: exit 1
    (1-1/1)