This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.7.2rc2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/usr/local --with-zlib=/usr --with-szlib=/usr/local --with-hdf5=/usr/local --with-netcdf=/usr/local --with-fftw3 --with-proj=/usr/local --with-udunits2=/usr/local --with-magics=/usr/local --with-xml2=/usr --with-threads=/usr --with-grib_api=/usr/local --with-curl=/usr LIBS=-lstdc++ CFLAGS=-fopenmp --with-cmor=/usr/local ## --------- ## ## Platform. ## ## --------- ## hostname = diogenis.hydromech.tuc.gr uname -m = x86_64 uname -r = 2.6.32-573.22.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed Mar 23 03:35:39 UTC 2016 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2620: checking build system type configure:2634: result: x86_64-unknown-linux-gnu configure:2654: checking host system type configure:2667: result: x86_64-unknown-linux-gnu configure:2706: checking for a BSD-compatible install configure:2774: result: /usr/bin/install -c configure:2785: checking whether build environment is sane configure:2840: result: yes configure:2991: checking for a thread-safe mkdir -p configure:3030: result: /bin/mkdir -p configure:3037: checking for gawk configure:3053: found /bin/gawk configure:3064: result: gawk configure:3075: checking whether make sets $(MAKE) configure:3097: result: yes configure:3126: checking whether make supports nested variables configure:3143: result: yes configure:3272: checking whether to enable maintainer-specific portions of Makefiles configure:3281: result: no configure:3308: checking for style of include used by make configure:3336: result: GNU configure:3407: checking for gcc configure:3423: found /usr/bin/gcc configure:3434: result: gcc configure:3663: checking for C compiler version configure:3672: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3683: $? = 0 configure:3672: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC) configure:3683: $? = 0 configure:3672: gcc -V >&5 gcc: '-V' option must have argument configure:3683: $? = 1 configure:3672: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3683: $? = 1 configure:3703: checking whether the C compiler works configure:3725: gcc -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:3729: $? = 0 configure:3777: result: yes configure:3780: checking for C compiler default output file name configure:3782: result: a.out configure:3788: checking for suffix of executables configure:3795: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:3799: $? = 0 configure:3821: result: configure:3843: checking whether we are cross compiling configure:3851: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:3855: $? = 0 configure:3862: ./conftest configure:3866: $? = 0 configure:3881: result: no configure:3886: checking for suffix of object files configure:3908: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:3912: $? = 0 configure:3933: result: o configure:3937: checking whether we are using the GNU C compiler configure:3956: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:3956: $? = 0 configure:3965: result: yes configure:3974: checking whether gcc accepts -g configure:3994: gcc -c -g -I/usr/local/include conftest.c >&5 configure:3994: $? = 0 configure:4035: result: yes configure:4052: checking for gcc option to accept ISO C89 configure:4115: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:4115: $? = 0 configure:4128: result: none needed configure:4153: checking whether gcc understands -c and -o together configure:4175: gcc -c conftest.c -o conftest2.o configure:4178: $? = 0 configure:4175: gcc -c conftest.c -o conftest2.o configure:4178: $? = 0 configure:4190: result: yes configure:4209: checking dependency style of gcc configure:4320: result: gcc3 configure:4385: checking for ar configure:4401: found /usr/bin/ar configure:4412: result: ar configure:4438: checking the archiver (ar) interface configure:4454: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:4454: $? = 0 configure:4456: ar cru libconftest.a conftest.o >&5 configure:4459: $? = 0 configure:4487: result: ar configure:4508: setting up libtool configure:4556: checking how to print strings configure:4583: result: printf configure:4604: checking for a sed that does not truncate output configure:4668: result: /bin/sed configure:4686: checking for grep that handles long lines and -e configure:4744: result: /bin/grep configure:4749: checking for egrep configure:4811: result: /bin/grep -E configure:4816: checking for fgrep configure:4878: result: /bin/grep -F configure:4913: checking for ld used by gcc configure:4980: result: /usr/bin/ld configure:4987: checking if the linker (/usr/bin/ld) is GNU ld configure:5002: result: yes configure:5014: checking for BSD- or MS-compatible name lister (nm) configure:5063: result: /usr/bin/nm -B configure:5193: checking the name lister (/usr/bin/nm -B) interface configure:5200: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:5203: /usr/bin/nm -B "conftest.o" configure:5206: output 0000000000000000 B some_variable configure:5213: result: BSD nm configure:5216: checking whether ln -s works configure:5220: result: yes configure:5228: checking the maximum length of command line arguments configure:5358: result: 1966080 configure:5375: checking whether the shell understands some XSI constructs configure:5385: result: yes configure:5389: checking whether the shell understands "+=" configure:5395: result: yes configure:5430: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:5470: result: func_convert_file_noop configure:5477: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:5497: result: func_convert_file_noop configure:5504: checking for /usr/bin/ld option to reload object files configure:5511: result: -r configure:5585: checking for objdump configure:5601: found /usr/bin/objdump configure:5612: result: objdump configure:5644: checking how to recognize dependent libraries configure:5846: result: pass_all configure:5931: checking for dlltool configure:5961: result: no configure:5991: checking how to associate runtime and link libraries configure:6018: result: printf %s\n configure:6142: checking for archiver @FILE support configure:6159: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:6159: $? = 0 configure:6162: ar cru libconftest.a @conftest.lst >&5 configure:6165: $? = 0 configure:6170: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6173: $? = 1 configure:6185: result: @ configure:6243: checking for strip configure:6259: found /usr/bin/strip configure:6270: result: strip configure:6342: checking for ranlib configure:6358: found /usr/bin/ranlib configure:6369: result: ranlib configure:6471: checking command to parse /usr/bin/nm -B output from gcc object configure:6591: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:6594: $? = 0 configure:6598: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6601: $? = 0 configure:6667: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c conftstm.o >&5 configure:6670: $? = 0 configure:6708: result: ok configure:6745: checking for sysroot configure:6775: result: no configure:6852: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:6855: $? = 0 configure:7031: checking for mt configure:7061: result: no configure:7081: checking if : is a manifest tool configure:7087: : '-?' configure:7095: result: no configure:7737: checking how to run the C preprocessor configure:7768: gcc -E -I/usr/local/include conftest.c configure:7768: $? = 0 configure:7782: gcc -E -I/usr/local/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:7782: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | /* end confdefs.h. */ | #include configure:7807: result: gcc -E configure:7827: gcc -E -I/usr/local/include conftest.c configure:7827: $? = 0 configure:7841: gcc -E -I/usr/local/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:7841: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | /* end confdefs.h. */ | #include configure:7870: checking for ANSI C header files configure:7890: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7890: $? = 0 configure:7963: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:7963: $? = 0 configure:7963: ./conftest configure:7963: $? = 0 configure:7974: result: yes configure:7987: checking for sys/types.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for sys/stat.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for stdlib.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for string.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for memory.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for strings.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for inttypes.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for stdint.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:7987: checking for unistd.h configure:7987: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:7987: $? = 0 configure:7987: result: yes configure:8001: checking for dlfcn.h configure:8001: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:8001: $? = 0 configure:8001: result: yes configure:8207: checking for objdir configure:8222: result: .libs configure:8493: checking if gcc supports -fno-rtti -fno-exceptions configure:8511: gcc -c -fopenmp -I/usr/local/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8515: $? = 0 configure:8528: result: no configure:8855: checking for gcc option to produce PIC configure:8862: result: -fPIC -DPIC configure:8870: checking if gcc PIC flag -fPIC -DPIC works configure:8888: gcc -c -fopenmp -I/usr/local/include -fPIC -DPIC -DPIC conftest.c >&5 configure:8892: $? = 0 configure:8905: result: yes configure:8934: checking if gcc static flag -static works configure:8962: result: no configure:8977: checking if gcc supports -c -o file.o configure:8998: gcc -c -fopenmp -I/usr/local/include -o out/conftest2.o conftest.c >&5 configure:9002: $? = 0 configure:9024: result: yes configure:9032: checking if gcc supports -c -o file.o configure:9079: result: yes configure:9112: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10265: result: yes configure:10302: checking whether -lc should be explicitly linked in configure:10310: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 configure:10313: $? = 0 configure:10328: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10331: $? = 0 configure:10345: result: no configure:10505: checking dynamic linker characteristics configure:11016: gcc -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5 configure:11016: $? = 0 configure:11238: result: GNU/Linux ld.so configure:11345: checking how to hardcode library paths into programs configure:11370: result: immediate configure:11910: checking whether stripping libraries is possible configure:11915: result: yes configure:11950: checking if libtool supports shared libraries configure:11952: result: yes configure:11955: checking whether to build shared libraries configure:11976: result: yes configure:11979: checking whether to build static libraries configure:11983: result: yes configure:12065: checking for gcc configure:12092: result: gcc configure:12157: checking for g++ configure:12173: found /usr/bin/g++ configure:12184: result: g++ configure:12206: checking for gcc option to accept ISO C99 configure:12355: gcc -c -fopenmp -I/usr/local/include conftest.c >&5 conftest.c:74: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:128: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:128: error: 'newvar' undeclared (first use in this function) conftest.c:128: error: (Each undeclared identifier is reported only once conftest.c:128: error: for each function it appears in.) conftest.c:138: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:138: note: use option -std=c99 or -std=gnu99 to compile your code configure:12355: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:12355: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:12355: $? = 0 configure:12375: result: -std=gnu99 configure:12384: checking for C/C++ restrict keyword configure:12409: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:12409: $? = 0 configure:12417: result: __restrict configure:12438: checking for gcc -std=gnu99 option to support OpenMP configure:12453: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:12453: $? = 0 configure:12485: result: none needed configure:12539: checking for ar configure:12566: result: ar configure:12723: checking for ld configure:12750: result: /usr/bin/ld -m elf_x86_64 configure:12815: checking for nm configure:12842: result: /usr/bin/nm -B configure:12907: checking for ar configure:12934: result: ar configure:12999: checking for as configure:13015: found /usr/bin/as configure:13026: result: as configure:13091: checking for dlltool configure:13118: result: false configure:13183: checking for objdump configure:13210: result: objdump configure:13275: checking for strip configure:13302: result: strip configure:13367: checking for ranlib configure:13394: result: ranlib configure:13529: checking for C++ compiler version configure:13538: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13549: $? = 0 configure:13538: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC) configure:13549: $? = 0 configure:13538: g++ -V >&5 g++: '-V' option must have argument configure:13549: $? = 1 configure:13538: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:13549: $? = 1 configure:13553: checking whether we are using the GNU C++ compiler configure:13572: g++ -c -I/usr/local/include conftest.cpp >&5 configure:13572: $? = 0 configure:13581: result: yes configure:13590: checking whether g++ accepts -g configure:13610: g++ -c -g -I/usr/local/include conftest.cpp >&5 configure:13610: $? = 0 configure:13651: result: yes configure:13676: checking dependency style of g++ configure:13787: result: gcc3 configure:13820: checking how to run the C++ preprocessor configure:13847: g++ -E -I/usr/local/include conftest.cpp configure:13847: $? = 0 configure:13861: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:13861: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:13886: result: g++ -E configure:13906: g++ -E -I/usr/local/include conftest.cpp configure:13906: $? = 0 configure:13920: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:13920: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:14089: checking for ld used by g++ configure:14156: result: /usr/bin/ld -m elf_x86_64 configure:14163: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:14178: result: yes configure:14233: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15238: result: yes configure:15274: g++ -c -g -O2 -I/usr/local/include conftest.cpp >&5 configure:15277: $? = 0 configure:15797: checking for g++ option to produce PIC configure:15804: result: -fPIC -DPIC configure:15812: checking if g++ PIC flag -fPIC -DPIC works configure:15830: g++ -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15834: $? = 0 configure:15847: result: yes configure:15870: checking if g++ static flag -static works configure:15898: result: no configure:15910: checking if g++ supports -c -o file.o configure:15931: g++ -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.cpp >&5 configure:15935: $? = 0 configure:15957: result: yes configure:15962: checking if g++ supports -c -o file.o configure:16009: result: yes configure:16039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16075: result: yes configure:16216: checking dynamic linker characteristics configure:16883: result: GNU/Linux ld.so configure:16936: checking how to hardcode library paths into programs configure:16961: result: immediate configure:17013: checking for special C compiler options needed for large files configure:17058: result: no configure:17064: checking for _FILE_OFFSET_BITS value needed for large files configure:17089: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17089: $? = 0 configure:17121: result: no configure:17214: checking for stdlib.h configure:17214: result: yes configure:17214: checking for unistd.h configure:17214: result: yes configure:17214: checking for sys/param.h configure:17214: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17214: $? = 0 configure:17214: result: yes configure:17234: checking for getpagesize configure:17234: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17234: $? = 0 configure:17234: result: yes configure:17243: checking for working mmap configure:17390: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17390: $? = 0 configure:17390: ./conftest configure:17390: $? = 0 configure:17400: result: yes configure:17411: checking for malloc in -lmalloc configure:17436: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lmalloc -lstdc++ >&5 conftest.c:37: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:17436: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17445: result: no configure:17458: checking for struct stat.st_blksize configure:17458: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17458: $? = 0 configure:17458: result: yes configure:17472: checking sys/resource.h usability configure:17472: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17472: $? = 0 configure:17472: result: yes configure:17472: checking sys/resource.h presence configure:17472: gcc -E -I/usr/local/include conftest.c configure:17472: $? = 0 configure:17472: result: yes configure:17472: checking for sys/resource.h configure:17472: result: yes configure:17484: checking sys/times.h usability configure:17484: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17484: $? = 0 configure:17484: result: yes configure:17484: checking sys/times.h presence configure:17484: gcc -E -I/usr/local/include conftest.c configure:17484: $? = 0 configure:17484: result: yes configure:17484: checking for sys/times.h configure:17484: result: yes configure:17496: checking malloc.h usability configure:17496: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17496: $? = 0 configure:17496: result: yes configure:17496: checking malloc.h presence configure:17496: gcc -E -I/usr/local/include conftest.c configure:17496: $? = 0 configure:17496: result: yes configure:17496: checking for malloc.h configure:17496: result: yes configure:17508: checking glob.h usability configure:17508: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17508: $? = 0 configure:17508: result: yes configure:17508: checking glob.h presence configure:17508: gcc -E -I/usr/local/include conftest.c configure:17508: $? = 0 configure:17508: result: yes configure:17508: checking for glob.h configure:17508: result: yes configure:17520: checking fnmatch.h usability configure:17520: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17520: $? = 0 configure:17520: result: yes configure:17520: checking fnmatch.h presence configure:17520: gcc -E -I/usr/local/include conftest.c configure:17520: $? = 0 configure:17520: result: yes configure:17520: checking for fnmatch.h configure:17520: result: yes configure:17532: checking wordexp.h usability configure:17532: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17532: $? = 0 configure:17532: result: yes configure:17532: checking wordexp.h presence configure:17532: gcc -E -I/usr/local/include conftest.c configure:17532: $? = 0 configure:17532: result: yes configure:17532: checking for wordexp.h configure:17532: result: yes configure:17544: checking execinfo.h usability configure:17544: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17544: $? = 0 configure:17544: result: yes configure:17544: checking execinfo.h presence configure:17544: gcc -E -I/usr/local/include conftest.c configure:17544: $? = 0 configure:17544: result: yes configure:17544: checking for execinfo.h configure:17544: result: yes configure:17558: checking for mallinfo configure:17558: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17558: $? = 0 configure:17558: result: yes configure:17569: checking for backtrace configure:17569: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17569: $? = 0 configure:17569: result: yes configure:17582: checking for getrlimit configure:17582: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17582: $? = 0 configure:17582: result: yes configure:17593: checking for gethostname configure:17593: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lstdc++ >&5 configure:17593: $? = 0 configure:17593: result: yes configure:17661: checking for floor in -lm configure:17686: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5 conftest.c:53: warning: conflicting types for built-in function 'floor' configure:17686: $? = 0 configure:17695: result: yes configure:17708: checking whether isnan is declared configure:17708: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17708: $? = 0 configure:17708: result: yes configure:17723: checking for sqrtl configure:17723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5 conftest.c:71: warning: conflicting types for built-in function 'sqrtl' configure:17723: $? = 0 configure:17723: result: yes configure:17734: checking for feenableexcept configure:17734: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/lical/lib conftest.c -lm -lstdc++ >&5 configure:17734: $? = 0 configure:17734: result: yes configure:17744: checking for fenv_t.__control configure:17744: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:56: error: 'fenv_t' has no member named '__control' configure:17744: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:17744: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:56: error: 'fenv_t' has no member named '__control' configure:17744: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:17744: result: no configure:17754: checking for fenv_t.__mxcsr configure:17754: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5 configure:17754: $? = 0 configure:17754: result: yes configure:17777: checking for DATA support configure:17791: result: configure:18276: checking pthread.h usability configure:18276: gcc -std=gnu99 -c -fopenmp -I/usr/include -I/usr/local/include conftest.c >&5 configure:18276: $? = 0 configure:18276: result: yes configure:18276: checking pthread.h presence configure:18276: gcc -E -I/usr/include -I/usr/local/include conftest.c configure:18276: $? = 0 configure:18276: result: yes configure:18276: checking for pthread.h configure:18276: result: yes configure:18286: checking for pthread_create in -lpthread configure:18311: gcc -std=gnu99 -o conftest -fopenmp -I/usr/include -I/usr/local/include -L/usr/lib -L/usr/lical/lib conftest.c -lpthread -lm -lstdc++ >&5 configure:18311: $? = 0 configure:18320: result: yes configure:18434: checking szlib.h usability configure:18434: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5 configure:18434: $? = 0 configure:18434: result: yes configure:18434: checking szlib.h presence configure:18434: gcc -E -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c configure:18434: $? = 0 configure:18434: result: yes configure:18434: checking for szlib.h configure:18434: result: yes configure:18444: checking for library containing SZ_BufftoBuffCompress configure:18475: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lpthread -lm -lstdc++ >&5 /tmp/ccpAWIr0.o: In function `main': conftest.c:(.text+0xa): undefined reference to `SZ_BufftoBuffCompress' collect2: ld returned 1 exit status configure:18475: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:18475: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lsz -lpthread -lm -lstdc++ >&5 configure:18475: $? = 0 configure:18492: result: -lsz configure:18682: checking hdf5.h usability configure:18682: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5 configure:18682: $? = 0 configure:18682: result: yes configure:18682: checking hdf5.h presence configure:18682: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c configure:18682: $? = 0 configure:18682: result: yes configure:18682: checking for hdf5.h configure:18682: result: yes configure:18692: checking for library containing H5Fopen configure:18723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lsz -lpthread -lm -lstdc++ >&5 /tmp/ccEPb4ak.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5Fopen' collect2: ld returned 1 exit status configure:18723: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:18723: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 configure:18723: $? = 0 configure:18740: result: -lhdf5 configure:18752: checking for library containing H5DSis_scale configure:18783: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /tmp/ccpmv29C.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5DSis_scale' collect2: ld returned 1 exit status configure:18783: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:18783: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 configure:18783: $? = 0 configure:18800: result: -lhdf5_hl configure:19015: checking netcdf.h usability configure:19015: gcc -std=gnu99 -c -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c >&5 configure:19015: $? = 0 configure:19015: result: yes configure:19015: checking netcdf.h presence configure:19015: gcc -E -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include conftest.c configure:19015: $? = 0 configure:19015: result: yes configure:19015: checking for netcdf.h configure:19015: result: yes configure:19025: checking for library containing nc_open configure:19056: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /tmp/cc94FvHL.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: ld returned 1 exit status configure:19056: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:19056: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 configure:19056: $? = 0 configure:19073: result: -lnetcdf configure:19088: checking nc-config script configure:19092: checking for nc-config configure:19108: found /usr/local/bin/nc-config configure:19119: result: /usr/local/bin/nc-config configure:19128: checking netcdf's OpenDAP support configure:19134: result: yes configure:19140: checking netcdf's nc2 support configure:19147: result: yes configure:19153: checking netcdf's nc4 support configure:19160: result: yes configure:19166: checking netcdf's nc4/hdf5 support configure:19173: result: yes configure:19199: checking for library containing H5TS_mutex_lock configure:19230: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /tmp/ccdWNNXi.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5TS_mutex_lock' collect2: ld returned 1 exit status configure:19230: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19230: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /tmp/ccd82TXA.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5TS_mutex_lock' collect2: ld returned 1 exit status configure:19230: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19247: result: no configure:19358: checking for library containing cmor_load_table configure:19389: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /tmp/cci5DQNQ.o: In function `main': conftest.c:(.text+0xa): undefined reference to `cmor_load_table' collect2: ld returned 1 exit status configure:19389: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cmor_load_table (); | int | main () | { | return cmor_load_table (); | ; | return 0; | } configure:19389: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib conftest.c -lcmor -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++ >&5 /usr/local/lib/libcmor.a(cmor_grids.o): In function `cmor_convert_value': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:88: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:89: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:94: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:95: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:99: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:100: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:104: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_grids.c:105: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor.o): In function `cmor_setup': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:779: undefined reference to `ut_free_system' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:781: undefined reference to `ut_ignore' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:781: undefined reference to `ut_set_error_message_handler' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:782: undefined reference to `ut_read_xml' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:783: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:787: undefined reference to `ut_ignore' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:787: undefined reference to `ut_set_error_message_handler' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:789: undefined reference to `ut_new_base_unit' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:790: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:794: undefined reference to `ut_map_name_to_unit' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:800: undefined reference to `ut_new_dimensionless_unit' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:801: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:805: undefined reference to `ut_map_name_to_unit' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:811: undefined reference to `ut_scale' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:816: undefined reference to `ut_map_name_to_unit' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:833: undefined reference to `uuid_create' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:834: undefined reference to `uuid_make' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:837: undefined reference to `uuid_export' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:840: undefined reference to `uuid_destroy' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:811: undefined reference to `ut_scale' /usr/local/lib/libcmor.a(cmor.o): In function `cmor_prep_units': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:335: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:336: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:343: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:344: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:345: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:351: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:357: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:360: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor.o): In function `cmor_write': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3339: undefined reference to `uuid_create' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3340: undefined reference to `uuid_make' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3343: undefined reference to `uuid_export' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:3349: undefined reference to `uuid_destroy' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2476: undefined reference to `uuid_create' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2477: undefined reference to `uuid_make' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2480: undefined reference to `uuid_export' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor.c:2484: undefined reference to `uuid_destroy' /usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_convert_interval_to_seconds': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:46: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:47: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:67: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:69: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:70: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:74: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:80: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:81: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:85: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:86: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:90: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:91: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:95: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:96: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:100: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:101: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_check_interval': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:953: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:954: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:955: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:956: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:960: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:966: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:967: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:971: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:972: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:977: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:978: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:982: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:983: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:998: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:999: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1003: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1009: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1010: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1018: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1019: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1064: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1065: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1070: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1071: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1075: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:1076: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor_axes.o): In function `cmor_treat_axis_values': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:609: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:610: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:611: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:619: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:620: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:621: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:627: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:633: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:634: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:640: undefined reference to `cv_convert_doubles' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:642: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:648: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:649: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:654: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:655: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:659: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_axes.c:660: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor_variables.o): In function `cmor_write_var_to_file': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1522: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1523: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1426: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1427: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1428: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1435: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1436: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1437: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1443: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1449: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1450: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1602: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1603: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1608: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1609: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1613: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:1614: undefined reference to `ut_get_status' /usr/local/lib/libcmor.a(cmor_variables.o): In function `cmor_zfactor': /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:454: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:456: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:457: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:458: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:462: undefined reference to `ut_are_convertible' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:468: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:469: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:474: undefined reference to `cv_convert_double' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:476: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:480: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:481: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:486: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:487: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:491: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:492: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:297: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:298: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:303: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:304: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:305: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:309: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:310: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:314: undefined reference to `cv_convert_doubles' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:315: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:319: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:320: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:324: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:325: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:329: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:330: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:392: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:393: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:398: undefined reference to `ut_trim' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:399: undefined reference to `ut_parse' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:400: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:404: undefined reference to `ut_get_converter' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:405: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:409: undefined reference to `cv_convert_doubles' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:410: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:414: undefined reference to `cv_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:415: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:420: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:421: undefined reference to `ut_get_status' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:425: undefined reference to `ut_free' /home/HYDROMECH/kostas/Desktop/Linux_Libs/14cmor/cmor-2.9.2/Src/cmor_variables.c:426: undefined reference to `ut_get_status' collect2: ld returned 1 exit status configure:19389: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.2rc2" | #define PACKAGE_STRING "cdo 1.7.2rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.2rc2" | #define PACKAGE "cdo" | #define VERSION "1.7.2rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cmor_load_table (); | int | main () | { | return cmor_load_table (); | ; | return 0; | } configure:19406: result: no configure:19415: error: Could not link to cmor library! ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fopenmp ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-I/usr/local/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-L/usr/lical/lib ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value=-lstdc++ ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/usr/local/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp='none needed' ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_cmor_load_table=no ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing aclocal-1.15' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing autoconf' AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing autoheader' AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing automake-1.15' AWK='gawk' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='' BUILD_SSE42_TESTS_TRUE='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_CXX='' ENABLE_DATA='' ENABLE_EXTRA='' ENABLE_GRIB='' ENABLE_GRIBAPI='' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='' ENABLE_THREADS='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HDF5_INCLUDE=' -I/usr/local/include' HDF5_LIBS=' -L/usr/local/lib -lhdf5' HDF5_ROOT='/usr/local' HOST_NAME='diogenis.hydromech.tuc.gr' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -L/usr/lib -L/usr/lical/lib -L/usr/local/lib' LIBOBJS='' LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -lm -lstdc++' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='/usr/local/bin/nc-config' NETCDF_INCLUDE=' -I/usr/local/include' NETCDF_LIBS=' -L/usr/local/lib -lnetcdf' NETCDF_ROOT='/usr/local' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.7.2rc2' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.7.2rc2' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE=' -I/usr/local/include' SZLIB_LIBS=' -L/usr/local/lib -lsz' THREADS_INCLUDE=' -I/usr/include' THREADS_LIBS=' -L/usr/lib -lpthread' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USER_NAME='kostas' VERSION='1.7.2rc2' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/Linux_Libs/15cdo/cdo-1.7.2rc2/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.7.2rc2" #define PACKAGE_STRING "cdo 1.7.2rc2" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.7.2rc2" #define PACKAGE "cdo" #define VERSION "1.7.2rc2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_MALLINFO 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)" #define USER_NAME "kostas" #define HOST_NAME "diogenis.hydromech.tuc.gr" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define HAVE_FEENABLEEXCEPT 1 #define HAVE_FENV_T___MXCSR 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_H 1 #define HAVE_LIBPTHREAD 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 configure: exit 1