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Homebrew 0.9.5 (git revision 001ff; last commit 2015-09-10)
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==> Installing cdo from homebrew/homebrew-science
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==> Using Homebrew-provided fortran compiler.
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This may be changed by setting the FC environment variable.
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==> Downloading https://code.zmaw.de/attachments/download/10198/cdo-1.6.9.tar.gz
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Already downloaded: /Library/Caches/Homebrew/cdo-1.6.9.tar.gz
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==> Verifying cdo-1.6.9.tar.gz checksum
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tar xf /Library/Caches/Homebrew/cdo-1.6.9.tar.gz
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==> ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/cdo/1.6.9 --with-netcdf=/usr/local/opt/netcdf --with-hdf5=/usr/local/opt/hdf5 --with-szlib=/usr/local/opt/szip --with-grib_api=/usr/local/opt/grib-api --with-jasper=/usr/local/opt/jasper
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checking build system type... x86_64-apple-darwin14.5.0
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checking host system type... x86_64-apple-darwin14.5.0
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checking for a BSD-compatible install... /usr/bin/install -c
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checking whether build environment is sane... yes
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checking for a thread-safe mkdir -p... config/install-sh -c -d
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checking for gawk... no
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checking for mawk... no
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checking for nawk... no
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checking for awk... awk
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checking whether make sets $(MAKE)... yes
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checking whether make supports nested variables... yes
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checking whether to enable maintainer-specific portions of Makefiles... no
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checking for style of include used by make... GNU
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checking for gcc... clang
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checking whether the C compiler works... yes
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checking for C compiler default output file name... a.out
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checking for suffix of executables...
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checking whether we are cross compiling... no
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checking for suffix of object files... o
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checking whether we are using the GNU C compiler... yes
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checking whether clang accepts -g... yes
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checking for clang option to accept ISO C89... none needed
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checking whether clang understands -c and -o together... yes
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checking dependency style of clang... none
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checking for ar... ar
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checking the archiver (ar) interface... ar
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configure: setting up libtool
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checking how to print strings... printf
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checking for a sed that does not truncate output... /usr/local/Library/ENV/4.3/sed
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checking for grep that handles long lines and -e... /usr/bin/grep
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checking for egrep... /usr/bin/grep -E
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checking for fgrep... /usr/bin/grep -F
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checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
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checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
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checking the name lister (/usr/bin/nm) interface... BSD nm
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checking whether ln -s works... yes
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checking the maximum length of command line arguments... 196608
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checking whether the shell understands some XSI constructs... yes
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checking whether the shell understands "+="... yes
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checking how to convert x86_64-apple-darwin14.5.0 file names to x86_64-apple-darwin14.5.0 format... func_convert_file_noop
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checking how to convert x86_64-apple-darwin14.5.0 file names to toolchain format... func_convert_file_noop
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checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
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checking for objdump... no
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checking how to recognize dependent libraries... pass_all
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checking for dlltool... no
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checking how to associate runtime and link libraries... printf %s\n
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checking for archiver @FILE support... no
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checking for strip... strip
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checking for ranlib... ranlib
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checking command to parse /usr/bin/nm output from clang object... ok
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checking for sysroot... no
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checking for mt... no
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checking if : is a manifest tool... no
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checking for dsymutil... dsymutil
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checking for nmedit... nmedit
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checking for lipo... lipo
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checking for otool... otool
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checking for otool64... no
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checking for -single_module linker flag... yes
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checking for -exported_symbols_list linker flag... yes
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checking for -force_load linker flag... yes
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checking how to run the C preprocessor... clang -E
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checking for ANSI C header files... yes
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checking for sys/types.h... yes
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checking for sys/stat.h... yes
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checking for stdlib.h... yes
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checking for string.h... yes
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checking for memory.h... yes
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checking for strings.h... yes
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checking for inttypes.h... yes
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checking for stdint.h... yes
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checking for unistd.h... yes
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checking for dlfcn.h... yes
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checking for objdir... .libs
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checking if clang supports -fno-rtti -fno-exceptions... yes
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checking for clang option to produce PIC... -fno-common -DPIC
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checking if clang PIC flag -fno-common -DPIC works... yes
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checking if clang static flag -static works... no
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checking if clang supports -c -o file.o... yes
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checking if clang supports -c -o file.o... (cached) yes
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checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking dynamic linker characteristics... darwin14.5.0 dyld
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checking how to hardcode library paths into programs... immediate
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checking whether stripping libraries is possible... yes
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checking if libtool supports shared libraries... yes
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checking whether to build shared libraries... yes
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checking whether to build static libraries... yes
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checking for gcc... (cached) clang
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checking for clang option to accept ISO C99... none needed
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checking for C/C++ restrict keyword... __restrict
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checking for clang option to support OpenMP... unsupported
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checking for ar... (cached) ar
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checking for ld... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking for nm... /usr/bin/nm
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checking for ar... (cached) ar
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checking for as... as
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checking for dlltool... false
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checking for objdump... false
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checking for strip... (cached) strip
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checking for ranlib... (cached) ranlib
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checking whether we are using the GNU C++ compiler... yes
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checking whether clang++ accepts -g... yes
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checking dependency style of clang++... none
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checking how to run the C++ preprocessor... clang++ -E
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checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
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checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking for clang++ option to produce PIC... -fno-common -DPIC
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checking if clang++ PIC flag -fno-common -DPIC works... yes
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checking if clang++ static flag -static works... no
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checking if clang++ supports -c -o file.o... yes
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checking if clang++ supports -c -o file.o... (cached) yes
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checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking dynamic linker characteristics... darwin14.5.0 dyld
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checking how to hardcode library paths into programs... immediate
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checking for special C compiler options needed for large files... no
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checking for _FILE_OFFSET_BITS value needed for large files... no
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checking for stdlib.h... (cached) yes
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checking for unistd.h... (cached) yes
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checking for sys/param.h... yes
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checking for getpagesize... yes
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checking for working mmap... yes
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checking for malloc in -lmalloc... no
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checking for struct stat.st_blksize... yes
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checking sys/resource.h usability... yes
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checking sys/times.h usability... yes
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checking for sys/times.h... yes
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checking malloc.h usability... no
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checking malloc.h presence... no
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checking for malloc.h... no
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checking glob.h usability... yes
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checking glob.h presence... yes
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checking for glob.h... yes
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checking fnmatch.h usability... yes
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checking wordexp.h usability... yes
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checking for wordexp.h... yes
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checking for mallinfo... no
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checking for floor in -lm... yes
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checking whether isnan is declared... yes
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checking for sqrtl... yes
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checking for DATA support... yes
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checking if compiler needs -Werror to reject unknown flags... yes
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checking whether pthreads work with -pthread... yes
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checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
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checking if more special flags are required for pthreads... -D_THREAD_SAFE
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checking for PTHREAD_PRIO_INHERIT... yes
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CC:clang CFLAGS:-g -O2 -D_THREAD_SAFE -pthread LIBS: -lm
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checking zlib.h usability... yes
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checking zlib.h presence... yes
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checking for zlib.h... yes
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checking for library containing deflate... -lz
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checking szlib.h usability... yes
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checking szlib.h presence... yes
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checking for szlib.h... yes
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checking for library containing SZ_BufftoBuffCompress... -lsz
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checking hdf5.h usability... yes
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checking hdf5.h presence... yes
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checking for hdf5.h... yes
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checking for library containing H5Fopen... -lhdf5
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checking for library containing H5DSis_scale... -lhdf5_hl
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checking netcdf.h usability... yes
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checking netcdf.h presence... yes
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checking for netcdf.h... yes
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checking for library containing nc_open... -lnetcdf
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checking nc-config script... checking for nc-config... /usr/local/opt/netcdf/bin/nc-config
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checking netcdf's OpenDAP support... yes
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checking netcdf's nc2 support... yes
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checking netcdf's nc4 support... yes
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checking netcdf's nc4/hdf5 support... yes
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checking for library containing H5TS_mutex_lock... no
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checking for library containing jas_stream_memopen... -ljasper
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checking grib_api.h usability... yes
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checking grib_api.h presence... yes
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checking for grib_api.h... yes
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checking for library containing grib_get_message... -lgrib_api
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checking for GRIB support... yes
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checking for CGRIBEX support... yes
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checking for SERVICE support... yes
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checking for EXTRA support... yes
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checking for IEG support... yes
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checking for FFTW3 support... checking for the PROJ library... suppressed
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checking for the CURL library... suppressed
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checking for the UDUNITS2 library... suppressed
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checking for MAGICS library... suppressed
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checking for XML2 library... suppressed
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checking for build a separate CDI library and link CDO to it... no
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checking for building an additional static CDO binary... no
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checking if x86/amd64 assembler speaks SSE4.2... yes
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checking if x86/amd64 assembler speaks AVX... yes
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checking if x86/amd64 assembler speaks AVX2... yes
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checking for gawk... (cached) awk
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checking that generated files are newer than configure... done
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configure: creating ./config.status
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config.status: creating test/File.test
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config.status: creating test/Read_grib.test
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config.status: creating test/Read_netcdf.test
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config.status: creating test/Copy_netcdf.test
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config.status: creating test/Cat.test
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config.status: creating test/Gridarea.test
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config.status: creating test/Genweights.test
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config.status: creating test/Remap.test
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config.status: creating test/Select.test
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config.status: creating test/Spectral.test
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config.status: creating test/Timstat.test
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config.status: creating test/Vertint.test
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config.status: creating test/Afterburner.test
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config.status: creating test/Detrend.test
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config.status: creating test/Arith.test
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config.status: creating test/Gradsdes.test
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config.status: creating test/wildcard.test
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config.status: creating Makefile
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config.status: creating src/Makefile
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config.status: creating contrib/Makefile
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config.status: creating test/Makefile
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config.status: creating test/data/Makefile
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config.status: creating cdo.spec
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config.status: creating cdo.settings
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config.status: creating src/config.h
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config.status: executing depfiles commands
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config.status: executing libtool commands
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=== configuring in libcdi (/private/tmp/cdo20150910-25165-1gk3lgy/cdo-1.6.9/libcdi)
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configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/Cellar/cdo/1.6.9' '--disable-debug' '--disable-dependency-tracking' '--with-netcdf=/usr/local/opt/netcdf' '--with-hdf5=/usr/local/opt/hdf5' '--with-szlib=/usr/local/opt/szip' '--with-grib_api=/usr/local/opt/grib-api' '--with-jasper=/usr/local/opt/jasper' 'CC=clang' 'CXX=clang++' --cache-file=/dev/null --srcdir=.
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configuring cdi 1.6.9
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checking build system type... x86_64-apple-darwin14.5.0
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checking host system type... x86_64-apple-darwin14.5.0
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checking for a BSD-compatible install... /usr/bin/install -c
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checking whether build environment is sane... yes
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checking for a thread-safe mkdir -p... config/install-sh -c -d
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checking for gawk... no
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checking for mawk... no
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checking for nawk... no
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checking for awk... awk
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checking whether make sets $(MAKE)... yes
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checking whether make supports nested variables... yes
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checking whether to enable maintainer-specific portions of Makefiles... no
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configure: setting up libtool
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checking how to print strings... printf
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checking for style of include used by make... GNU
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checking for gcc... clang
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checking whether the C compiler works... yes
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checking for C compiler default output file name... a.out
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checking for suffix of executables...
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checking whether we are cross compiling... no
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checking for suffix of object files... o
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checking whether we are using the GNU C compiler... yes
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checking whether clang accepts -g... yes
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checking for clang option to accept ISO C89... none needed
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checking whether clang understands -c and -o together... yes
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checking dependency style of clang... none
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checking for a sed that does not truncate output... /usr/local/Library/ENV/4.3/sed
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checking for grep that handles long lines and -e... /usr/bin/grep
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checking for egrep... /usr/bin/grep -E
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checking for fgrep... /usr/bin/grep -F
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checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
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checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
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checking the name lister (/usr/bin/nm) interface... BSD nm
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checking whether ln -s works... yes
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checking the maximum length of command line arguments... 196608
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checking whether the shell understands some XSI constructs... yes
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checking whether the shell understands "+="... yes
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checking how to convert x86_64-apple-darwin14.5.0 file names to x86_64-apple-darwin14.5.0 format... func_convert_file_noop
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checking how to convert x86_64-apple-darwin14.5.0 file names to toolchain format... func_convert_file_noop
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checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
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checking for objdump... no
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checking how to recognize dependent libraries... pass_all
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checking for dlltool... no
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checking how to associate runtime and link libraries... printf %s\n
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checking for ar... ar
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checking for archiver @FILE support... no
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checking for strip... strip
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checking for ranlib... ranlib
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checking command to parse /usr/bin/nm output from clang object... ok
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checking for sysroot... no
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checking for mt... no
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checking if : is a manifest tool... no
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checking for dsymutil... dsymutil
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checking for nmedit... nmedit
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checking for lipo... lipo
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checking for otool... otool
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checking for otool64... no
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checking for -single_module linker flag... yes
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checking for -exported_symbols_list linker flag... yes
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checking for -force_load linker flag... yes
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checking how to run the C preprocessor... clang -E
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checking for ANSI C header files... yes
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checking for sys/types.h... yes
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checking for sys/stat.h... yes
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checking for stdlib.h... yes
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checking for string.h... yes
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checking for memory.h... yes
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checking for strings.h... yes
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checking for inttypes.h... yes
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checking for stdint.h... yes
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checking for unistd.h... yes
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checking for dlfcn.h... yes
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checking for objdir... .libs
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checking if clang supports -fno-rtti -fno-exceptions... yes
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checking for clang option to produce PIC... -fno-common -DPIC
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checking if clang PIC flag -fno-common -DPIC works... yes
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checking if clang static flag -static works... no
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checking if clang supports -c -o file.o... yes
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checking if clang supports -c -o file.o... (cached) yes
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checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking dynamic linker characteristics... darwin14.5.0 dyld
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checking how to hardcode library paths into programs... immediate
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checking whether stripping libraries is possible... yes
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checking if libtool supports shared libraries... yes
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checking whether to build shared libraries... yes
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checking whether to build static libraries... yes
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checking for gcc... (cached) clang
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checking for clang option to accept ISO C99... none needed
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checking for C/C++ restrict keyword... __restrict
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checking whether we are using the GNU Fortran compiler... no
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checking whether no accepts -g... no
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checking whether we are using the GNU Fortran 77 compiler... yes
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checking whether /usr/local/bin/gfortran accepts -g... yes
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checking if libtool supports shared libraries... yes
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checking whether to build shared libraries... yes
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checking whether to build static libraries... yes
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checking for /usr/local/bin/gfortran option to produce PIC... -fno-common
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checking if /usr/local/bin/gfortran PIC flag -fno-common works... yes
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checking if /usr/local/bin/gfortran static flag -static works... no
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checking if /usr/local/bin/gfortran supports -c -o file.o... yes
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checking if /usr/local/bin/gfortran supports -c -o file.o... (cached) yes
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checking whether the /usr/local/bin/gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking dynamic linker characteristics... darwin14.5.0 dyld
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checking how to hardcode library paths into programs... immediate
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checking whether we are using the GNU C++ compiler... yes
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checking whether clang++ accepts -g... yes
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checking dependency style of clang++... none
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checking how to run the C++ preprocessor... clang++ -E
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checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
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checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking for clang++ option to produce PIC... -fno-common -DPIC
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checking if clang++ PIC flag -fno-common -DPIC works... yes
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checking if clang++ static flag -static works... no
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checking if clang++ supports -c -o file.o... yes
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checking if clang++ supports -c -o file.o... (cached) yes
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checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
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checking dynamic linker characteristics... darwin14.5.0 dyld
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checking how to hardcode library paths into programs... immediate
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checking for sed... /usr/local/Library/ENV/4.3/sed
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checking for grep... /usr/bin/grep
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checking for ar... (cached) ar
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checking for ld... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
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checking for nm... /usr/bin/nm
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checking for as... as
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checking for dlltool... false
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checking for objdump... false
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checking for strip... (cached) strip
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checking for ranlib... (cached) ranlib
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checking whether byte ordering is bigendian... no
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checking for special C compiler options needed for large files... no
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checking for _FILE_OFFSET_BITS value needed for large files... no
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checking for stdlib.h... (cached) yes
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checking for unistd.h... (cached) yes
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checking for sys/param.h... yes
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checking for getpagesize... yes
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checking for working mmap... yes
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checking for malloc in -lmalloc... no
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checking for struct stat.st_blksize... yes
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checking malloc.h usability... no
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checking malloc.h presence... no
|
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checking for malloc.h... no
|
|
checking uuid.h usability... no
|
|
checking uuid.h presence... no
|
|
checking for uuid.h... no
|
|
checking uuid/uuid.h usability... yes
|
|
checking uuid/uuid.h presence... yes
|
|
checking for uuid/uuid.h... yes
|
|
checking execinfo.h usability... yes
|
|
checking execinfo.h presence... yes
|
|
checking for execinfo.h... yes
|
|
checking size parameter type for backtrace()... int
|
|
checking for library containing backtrace... none required
|
|
checking for mallinfo... no
|
|
checking for getline... yes
|
|
checking for uuid_generate in -luuid... no
|
|
checking for uuid_create... no
|
|
checking whether isnan is declared... yes
|
|
checking whether __builtin_ctz is declared... no
|
|
checking for floor in -lm... yes
|
|
checking if compiler needs -Werror to reject unknown flags... yes
|
|
checking whether pthreads work with -pthread... yes
|
|
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
|
|
checking if more special flags are required for pthreads... -D_THREAD_SAFE
|
|
checking for PTHREAD_PRIO_INHERIT... yes
|
|
CC:clang CFLAGS:-g -O2 -D_THREAD_SAFE -pthread LIBS: -lm
|
|
checking zlib.h usability... yes
|
|
checking zlib.h presence... yes
|
|
checking for zlib.h... yes
|
