Homebrew 0.9.5 (git revision 001ff; last commit 2015-09-10) ==> Installing cdo from homebrew/homebrew-science ==> Using Homebrew-provided fortran compiler. This may be changed by setting the FC environment variable. ==> Downloading https://code.zmaw.de/attachments/download/10198/cdo-1.6.9.tar.gz Already downloaded: /Library/Caches/Homebrew/cdo-1.6.9.tar.gz ==> Verifying cdo-1.6.9.tar.gz checksum tar xf /Library/Caches/Homebrew/cdo-1.6.9.tar.gz ==> ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/cdo/1.6.9 --with-netcdf=/usr/local/opt/netcdf --with-hdf5=/usr/local/opt/hdf5 --with-szlib=/usr/local/opt/szip --with-grib_api=/usr/local/opt/grib-api --with-jasper=/usr/local/opt/jasper checking build system type... x86_64-apple-darwin14.5.0 checking host system type... x86_64-apple-darwin14.5.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking whether clang understands -c and -o together... yes checking dependency style of clang... none checking for ar... ar checking the archiver (ar) interface... ar configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /usr/local/Library/ENV/4.3/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin14.5.0 file names to x86_64-apple-darwin14.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin14.5.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) clang checking for clang option to accept ISO C99... none needed checking for C/C++ restrict keyword... __restrict checking for clang option to support OpenMP... unsupported checking for ar... (cached) ar checking for ld... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking for nm... /usr/bin/nm checking for ar... (cached) ar checking for as... as checking for dlltool... false checking for objdump... false checking for strip... (cached) strip checking for ranlib... (cached) ranlib checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking dependency style of clang++... none checking how to run the C++ preprocessor... clang++ -E checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for clang++ option to produce PIC... -fno-common -DPIC checking if clang++ PIC flag -fno-common -DPIC works... yes checking if clang++ static flag -static works... no checking if clang++ supports -c -o file.o... yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.5.0 dyld checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for malloc in -lmalloc... no checking for struct stat.st_blksize... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking wordexp.h usability... yes checking wordexp.h presence... yes checking for wordexp.h... yes checking for mallinfo... no checking for getrlimit... yes checking for gethostname... yes checking for floor in -lm... yes checking whether isnan is declared... yes checking for sqrtl... yes checking for DATA support... yes checking if compiler needs -Werror to reject unknown flags... yes checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking for PTHREAD_PRIO_INHERIT... yes CC:clang CFLAGS:-g -O2 -D_THREAD_SAFE -pthread LIBS: -lm checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing deflate... -lz checking szlib.h usability... yes checking szlib.h presence... yes checking for szlib.h... yes checking for library containing SZ_BufftoBuffCompress... -lsz checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for library containing H5Fopen... -lhdf5 checking for library containing H5DSis_scale... -lhdf5_hl checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking nc-config script... checking for nc-config... /usr/local/opt/netcdf/bin/nc-config checking netcdf's OpenDAP support... yes checking netcdf's nc2 support... yes checking netcdf's nc4 support... yes checking netcdf's nc4/hdf5 support... yes checking for library containing H5TS_mutex_lock... no checking for library containing jas_stream_memopen... -ljasper checking grib_api.h usability... yes checking grib_api.h presence... yes checking for grib_api.h... yes checking for library containing grib_get_message... -lgrib_api checking for GRIB support... yes checking for CGRIBEX support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for FFTW3 support... checking for the PROJ library... suppressed checking for the CURL library... suppressed checking for the UDUNITS2 library... suppressed checking for MAGICS library... suppressed checking for XML2 library... suppressed checking for build a separate CDI library and link CDO to it... no checking for building an additional static CDO binary... no checking if x86/amd64 assembler speaks SSE4.2... yes checking if x86/amd64 assembler speaks AVX... yes checking if x86/amd64 assembler speaks AVX2... yes checking for gawk... (cached) awk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating test/File.test config.status: creating test/Read_grib.test config.status: creating test/Read_netcdf.test config.status: creating test/Copy_netcdf.test config.status: creating test/Cat.test config.status: creating test/Gridarea.test config.status: creating test/Genweights.test config.status: creating test/Remap.test config.status: creating test/Select.test config.status: creating test/Spectral.test config.status: creating test/Timstat.test config.status: creating test/Vertint.test config.status: creating test/Afterburner.test config.status: creating test/Detrend.test config.status: creating test/Arith.test config.status: creating test/Gradsdes.test config.status: creating test/wildcard.test config.status: creating Makefile config.status: creating src/Makefile config.status: creating contrib/Makefile config.status: creating test/Makefile config.status: creating test/data/Makefile config.status: creating cdo.spec config.status: creating cdo.settings config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in libcdi (/private/tmp/cdo20150910-25165-1gk3lgy/cdo-1.6.9/libcdi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local/Cellar/cdo/1.6.9' '--disable-debug' '--disable-dependency-tracking' '--with-netcdf=/usr/local/opt/netcdf' '--with-hdf5=/usr/local/opt/hdf5' '--with-szlib=/usr/local/opt/szip' '--with-grib_api=/usr/local/opt/grib-api' '--with-jasper=/usr/local/opt/jasper' 'CC=clang' 'CXX=clang++' --cache-file=/dev/null --srcdir=. configuring cdi 1.6.9 checking build system type... x86_64-apple-darwin14.5.0 checking host system type... x86_64-apple-darwin14.5.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: setting up libtool checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking whether clang understands -c and -o together... yes checking dependency style of clang... none checking for a sed that does not truncate output... /usr/local/Library/ENV/4.3/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin14.5.0 file names to x86_64-apple-darwin14.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin14.5.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) clang checking for clang option to accept ISO C99... none needed checking for C/C++ restrict keyword... __restrict checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/local/bin/gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /usr/local/bin/gfortran option to produce PIC... -fno-common checking if /usr/local/bin/gfortran PIC flag -fno-common works... yes checking if /usr/local/bin/gfortran static flag -static works... no checking if /usr/local/bin/gfortran supports -c -o file.o... yes checking if /usr/local/bin/gfortran supports -c -o file.o... (cached) yes checking whether the /usr/local/bin/gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking dependency style of clang++... none checking how to run the C++ preprocessor... clang++ -E checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for clang++ option to produce PIC... -fno-common -DPIC checking if clang++ PIC flag -fno-common -DPIC works... yes checking if clang++ static flag -static works... no checking if clang++ supports -c -o file.o... yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.5.0 dyld checking how to hardcode library paths into programs... immediate checking for sed... /usr/local/Library/ENV/4.3/sed checking for grep... /usr/bin/grep checking for ar... (cached) ar checking for ld... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking for nm... /usr/bin/nm checking for as... as checking for dlltool... false checking for objdump... false checking for strip... (cached) strip checking for ranlib... (cached) ranlib checking whether byte ordering is bigendian... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for malloc in -lmalloc... no checking for struct stat.st_blksize... yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking uuid.h usability... no checking uuid.h presence... no checking for uuid.h... no checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking size parameter type for backtrace()... int checking for library containing backtrace... none required checking for mallinfo... no checking for getline... yes checking for uuid_generate in -luuid... no checking for uuid_create... no checking whether isnan is declared... yes checking whether __builtin_ctz is declared... no checking for floor in -lm... yes checking if compiler needs -Werror to reject unknown flags... yes checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking for PTHREAD_PRIO_INHERIT... yes CC:clang CFLAGS:-g -O2 -D_THREAD_SAFE -pthread LIBS: -lm checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes