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Error (cdf_put_vara_float) : NetCDF: HDF error on 'select' operator

Added by Noam Chomsky almost 5 years ago

I have about 150 ncdf files and I use a loop to perform a select operation. Mind that I launch this loop on a cluster with qsub.

Towards the end of the process, for the last 10 files I get
"Error (cdf_put_vara_float) : NetCDF: HDF error
./concatenate-small.sh: line 17: 32425: Memory fault(coredump)

and the select produces empty file.

There's nothing wrong with the files because when I relaunch the same operation on the remaining files it produces the correct results.

I am thinking it's some kind of RAM issue caused. What could it be?