Meaning of "HDF5 support not compiled in" when remapping
Added by Robert Wilson over 4 years ago
When I carry out regridding I get the message "HDF5 support not compiled in". The regridding results always seem absolutely fine.
I have built CDO with "--with-hdf5" argument when configuring, and there is no indication at that point that there is a problem.
Does the warning message imply I should reinstall CDO, and change the "--with-hdf5" arg?
Regards
Robert Wilson
Replies (2)
RE: Meaning of "HDF5 support not compiled in" when remapping - Added by Karin Meier-Fleischer over 4 years ago
Hi Robert,
in my opinion, yes I would install the current version of CDO with HDF5. You can use conda which does it for you.
NetCDF-4 files are respectable HDF5 files but they don't have HDF5 full extent.
-Karin
RE: Meaning of "HDF5 support not compiled in" when remapping - Added by Robert Wilson over 4 years ago
Hi Karin
There seem to be some conflict issues with my base conda environment, which is getting bloated, and cdo.
But I have been able to install it problem from in a new conda environment, and the error message goes away. I'll switch to conda from now on, as it also gets round the difficulty of making hdf5 threadsafe.
Thank you,
Robert