CDO

Hi,

I'm building CDO 1.9.0 with gcc 4.9.2 and CMOR 2.9.3

Firstly, it got an error of "invalid conversion from ‘void*’ to ‘char**’", like this

In file included from cdo_int.h:42:0,
                 from CMOR.cc:3:
CMOR.cc: In function ‘void parse_cmdline(list_t*, char**, int, char*)’:
dmemory.h:35:71: error: invalid conversion from ‘void*’ to ‘char**’ [-fpermissive]
 #  define   Malloc(s)      memMalloc((s), __FILE__, __func__, __LINE__)
                                                                       ^
CMOR.cc:3592:20: note: in expansion of macro ‘Malloc’
           values = Malloc(100 * sizeof(char *));

^

I set -fpermissive to downgrade it to a warning to suppress this error and passed compilation of CMOR.cc

But at the link time, it complained a lot of errors of 'undefined reference to `cmor_*', like this

cdo-CMOR.o: In function `setup_dataset(list_t*, int, int*)':
CMOR.cc:(.text+0x4005): undefined reference to `cmor_setup(char*, int*, int*, int*, char*, int*)'
CMOR.cc:(.text+0x43a8): undefined reference to `cmor_dataset(char*, char*, char*, char*, char*, int, char*, char*, char*, char*, int, int, int*, char*, char*, int, int, char*, char*, double*, char*)'
cdo-CMOR.o: In function `register_z_axis(list_t*, int, int, int, char*, int*, int*, char*, int)':
CMOR.cc:(.text+0x54a3): undefined reference to `cmor_axis(int*, char*, char*, int, void*, char, void*, int, char*)'
CMOR.cc:(.text+0x5604): undefined reference to `cmor_axis(int*, char*, char*, int, void*, char, void*, int, char*)'

I did specify the include path and lib path of cmor, and I could make sure the path is valid and has been passed to compiler correctly.

And I also checked that all of cmor_* have been defined in libcmor.a

Here are the output of nm

jliu@helios:cdo-1.9.0 $ nm src/cdo-CMOR.o | grep cmor_setup
U Z10cmor_setupPcPiS0_S0_S_S0

jliu@helios:cdo-1.9.0 $ nm /scratch/singadm/pkg_helios/cmor/2.9.3/lib/libcmor.a | grep cmor_setup
000000000000220b T cmor_setup
U cmor_setup
0000000000000b71 T cmor_setup_cff_
0000000000000b25 T cmor_setup_cff_nolog_
000000000002d9f0 T _cmor_users_functions_MOD_cmor_setup_ints
000000000002e160 T __cmor_users_functions_MOD_cmor_setup_nc_char
U cmor_setup_cff
U cmor_setup_cff_nolog_

Wondering how to fix this problem.

Thanks for your time

Regards

Jerry