CDO

Dear all,

I just tried to perfrom some cdo operations on certain files and encountered a similar error as described in:
[[https://code.zmaw.de/boards/1/topics/3147]]

Oddly the error so far only appered when calling cdo sinfo, other cdo operations like selyear are working fine.

Though I have not reinstalled nor updated cdo and the error just appears on certain files:

cdo -V

Climate Data Operators version 1.6.4 (http://code.zmaw.de/projects/cdo)
    Compiled: by buildd on brahms (x86_64-unknown-linux-gnu) Oct 16 2014 13:09:38
    Compiler: gcc -std=gnu99 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -fopenmp 
     version: gcc (Debian 4.9.1-17) 4.9.1
    Features: PTHREADS OpenMP NC4 OPeNDAP Z JASPER PROJ.4 MAGICS
    Libraries: proj/4.8
    Filetypes: srv ext ieg grb grb2 nc nc2 nc4 nc4c 
     CDI library version : 1.6.4 of Oct 16 2014 13:09:17
    GRIB_API library version : 1.10.4
      netCDF library version : 4.1.3 of Oct  3 2014 13:49:32 $
    HDF5 library version : 1.8.13
     SERVICE library version : 1.3.2 of Oct 16 2014 13:08:54
       EXTRA library version : 1.3.2 of Oct 16 2014 13:08:45
     IEG library version : 1.3.2 of Oct 16 2014 13:08:51
    FILE library version : 1.8.2 of Oct 16 2014 13:08:45

When I intend to process this netcdf4 files I encounter the following error:

File format : netCDF4
    -1 : Institut Source   Ttype    Levels Num    Points Num Dtype : Parameter ID
 * buffer overflow detected *: cdo terminated
 ======= Backtrace: =========
    /lib/x86_64-linux-gnu/libc.so.6(+0x731ff)[0x7ff3e41fe1ff]
    /lib/x86_64-linux-gnu/libc.so.6(_fortify_fail+0x37)[0x7ff3e42814c7]
    /lib/x86_64-linux-gnu/libc.so.6(+0xf46e0)[0x7ff3e427f6e0]
    cdo[0x49339e]
    cdo[0x40c381]
    /lib/x86_64-linux-gnu/libc.so.6(_libc_start_main+0xf5)[0x7ff3e41acb45]
    cdo[0x40d214]
 ======= Memory map: ========

also followed by a list of library links ending with

7fffb421e000-7fffb4272000 rw-p 00000000 00:00 0                          [stack]
    7fffb42d0000-7fffb42d2000 r-xp 00000000 00:00 0                          [vdso]
    7fffb42d2000-7fffb42d4000 r--p 00000000 00:00 0                          [vvar]
    ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
     1 : unknown  Aborted

The output of nc-config --all is as follows:

This netCDF 4.1.3 has been built with the following features:

--cc        -> gcc
  --cflags    ->  -I/usr/include -DgFortran
  --libs      -> -L/usr/lib -lnetcdf

--cxx       -> g++
  --has-c++   -> yes

--fc        -> gfortran
  --fflags    -> -g -O2 -I/usr/include
  --flibs     -> -L/usr/lib -lnetcdff -lnetcdf
  --has-f77   -> yes
  --has-f90   -> yes

--has-dap   > yes
  --has-nc2   -> yes
  --has-nc4   -> yes
  --has-hdf5  -> yes
  --has-hdf4  -> no
  --has-pnetcdf> no
  --has-szlib ->

--prefix    > /usr
  --includedir> /usr/include
  --version   -> netCDF 4.1.3

I attached the error log and a snippet of the concerning netcdf files.

Can you please help me figure that out what is cousing this error. It may be quite similar to
[[https://code.zmaw.de/boards/1/topics/3147]]

Thanks!!
Martin