CDO

Dear all,

I just tried to update my older cdo version to the latest cdo1.6.6 version, hereby using the following commands:
./configure --enable-netcdf4 --enable-zlib --with-netcdf=/usr/ --with-hdf5=/usr/
make
sudo make install

I was under the impression all went well, with the following output for
cdo -V:

Climate Data Operators version 1.6.6 (http://code.zmaw.de/projects/cdo)
 Compiled: by rcs on rcs-Precision-T5600 (x86_64-unknown-linux-gnu) Dec  1 2014 04:07:44
 Compiler: gcc -std=gnu99 -g -O2 -fopenmp 
 version: gcc (Ubuntu/Linaro 4.8.1-10ubuntu9) 4.8.1
 Features: PTHREADS OpenMP NC4 OPeNDAP Z SSE2
 Libraries:
 Filetypes: srv ext ieg grb nc nc2 nc4 nc4c 
     CDI library version : 1.6.6 of Dec  1 2014 04:07:36
 CGRIBEX library version : 1.7.0 of Sep 30 2014 13:27:33
  netCDF library version : 4.1.3 of Sep 17 2013 11:49:01 $
    HDF5 library version : 1.8.11
 SERVICE library version : 1.3.2 of Dec  1 2014 04:07:20
   EXTRA library version : 1.3.2 of Dec  1 2014 04:07:14
     IEG library version : 1.3.3 of Dec  1 2014 04:07:18
    FILE library version : 1.8.2 of Dec  1 2014 04:07:14

When I try to open a netcdf4 file, I get the following error:

File format : netCDF4 ZIP
-1 : Institut Source Ttype Levels Num Points Num Dtype : Parameter name

• buffer overflow detected ***: cdo1.6.6 terminated ======= Backtrace: =========
  /lib/x86_64-linux-gnu/libc.so.6(_fortify_fail+0x5c)[0x7f6c4dcfe08c]
  /lib/x86_64-linux-gnu/libc.so.6(+0x111020)[0x7f6c4dcfd020]
  cdo1.6.6[0x4882bb]
  cdo1.6.6[0x407450]
  /lib/x86_64-linux-gnu/libc.so.6(_libc_start_main+0xf5)[0x7f6c4dc0dde5]
  cdo1.6.6[0x40826f] ======= Memory map: ========

Followed by a whole list of library links which end with

7fff6d3d1000-7fff6d424000 rw-p 00000000 00:00 0                          [stack]
 7fff6d425000-7fff6d427000 r-xp 00000000 00:00 0                          [vdso]
 ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
      1 : unknown  Aborted (core dumped)

Please find the full log in attach.

If I use this cdo version to open a non-netcdf4 file it seems to work fine.

The output of nc-config --all is as follows:

This netCDF 4.1.3 has been built with the following features: 

--cc        -> gcc
  --cflags    ->  -I/usr/include -DgFortran
  --libs      -> -L/usr/lib -lnetcdf

--cxx       -> g++
  --has-c++   -> yes

--fc        -> gfortran
  --fflags    -> -g -O2 -I/usr/include
  --flibs     -> -L/usr/lib -lnetcdff -lnetcdf
  --has-f77   -> yes
  --has-f90   -> yes

--has-dap   > yes
  --has-nc2   -> yes
  --has-nc4   -> yes
  --has-hdf5  -> yes
  --has-hdf4  -> no
  --has-pnetcdf> no
  --has-szlib ->

--prefix    > /usr
  --includedir> /usr/include
  --version   -> netCDF 4.1.3

Does anyone has an idea what could be causing this?

Thanks!
Matthias