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RE: cdo configure error not finding nc_open » make.log

Benjamin Müller, 2015-01-13 10:59

 
Making all in libcdi
make[1]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi'
Making all in src
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/src'
make all-am
make[3]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/src'
make[3]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/src'
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/src'
Making all in interfaces
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/interfaces'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/interfaces'
Making all in app
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/app'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/app'
Making all in examples
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/examples'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/examples'
Making all in examples/pio
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/examples/pio'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/examples/pio'
Making all in tests
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi/tests'
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/libcdi'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi'
make[1]: Leaving directory '/home/b.mueller/cdo-1.6.7/libcdi'
Making all in src
make[1]: Entering directory '/home/b.mueller/cdo-1.6.7/src'
make all-am
make[2]: Entering directory '/home/b.mueller/cdo-1.6.7/src'
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fopenmp -o cdo.exe cdo-cdo.o cdo-Adisit.o cdo-Arith.o cdo-Arithc.o cdo-Arithdays.o cdo-Arithlat.o cdo-CDItest.o cdo-CDIread.o cdo-CDIwrite.o cdo-Cat.o cdo-Change.o cdo-Change_e5slm.o cdo-Cloudlayer.o cdo-Collgrid.o cdo-Command.o cdo-Comp.o cdo-Compc.o cdo-Complextorect.o cdo-Cond.o cdo-Cond2.o cdo-Condc.o cdo-Consecstat.o cdo-Copy.o cdo-Deltime.o cdo-Derivepar.o cdo-Detrend.o cdo-Diff.o cdo-Distgrid.o cdo-Duplicate.o cdo-EOFs.o cdo-Eof3d.o cdo-EcaIndices.o cdo-Echam5ini.o cdo-Enlarge.o cdo-Enlargegrid.o cdo-Ensstat.o cdo-Ensstat3.o cdo-Ensval.o cdo-Eofcoeff.o cdo-Eofcoeff3d.o cdo-Exprf.o cdo-FC.o cdo-Filedes.o cdo-Fillmiss.o cdo-Filter.o cdo-Fldrms.o cdo-Fldstat.o cdo-Fldstat2.o cdo-Fourier.o cdo-Gengrid.o cdo-Gradsdes.o cdo-Gridboxstat.o cdo-Gridcell.o cdo-Gridsearch.o cdo-Harmonic.o cdo-Hi.o cdo-Histogram.o cdo-Importamsr.o cdo-Importbinary.o cdo-Importcmsaf.o cdo-Importobs.o cdo-Info.o cdo-Input.o cdo-Intgrid.o cdo-Intgridtraj.o cdo-Intlevel.o cdo-Intlevel3d.o cdo-Intntime.o cdo-Inttime.o cdo-Intyear.o cdo-Invert.o cdo-Invertlev.o cdo-Isosurface.o cdo-Kvl.o cdo-Log.o cdo-Maskbox.o cdo-Mastrfu.o cdo-Math.o cdo-Merge.o cdo-Mergegrid.o cdo-Mergetime.o cdo-Merstat.o cdo-Monarith.o cdo-Mrotuv.o cdo-Mrotuvb.o cdo-Ninfo.o cdo-Nmltest.o cdo-Output.o cdo-Outputgmt.o cdo-Pack.o cdo-Pinfo.o cdo-Pressure.o cdo-Regres.o cdo-Remap.o cdo-Remapeta.o cdo-Replace.o cdo-Replacevalues.o cdo-Rhopot.o cdo-Rotuv.o cdo-Runpctl.o cdo-Runstat.o cdo-Seascount.o cdo-Seaspctl.o cdo-Seasstat.o cdo-Selbox.o cdo-Select.o cdo-Seloperator.o cdo-Selrec.o cdo-Seltime.o cdo-Selvar.o cdo-Set.o cdo-Setbox.o cdo-Setgatt.o cdo-Setgrid.o cdo-Sethalo.o cdo-Setmiss.o cdo-Setpartab.o cdo-Setrcaname.o cdo-Settime.o cdo-Setzaxis.o cdo-Showinfo.o cdo-Sinfo.o cdo-Smooth9.o cdo-Sort.o cdo-Sorttimestamp.o cdo-Specinfo.o cdo-Spectral.o cdo-Spectrum.o cdo-Split.o cdo-Splitrec.o cdo-Splitsel.o cdo-Splittime.o cdo-Splityear.o cdo-SSOpar.o cdo-Subtrend.o cdo-Tee.o cdo-Templates.o cdo-Test.o cdo-Tests.o cdo-Timcount.o cdo-Timpctl.o cdo-Timselpctl.o cdo-Timselstat.o cdo-Timsort.o cdo-Timstat.o cdo-Timstat2.o cdo-Timstat3.o cdo-Tinfo.o cdo-Tocomplex.o cdo-Transpose.o cdo-Trend.o cdo-Trms.o cdo-Tstepcount.o cdo-Vardup.o cdo-Vargen.o cdo-Varrms.o cdo-Vertint.o cdo-Vertstat.o cdo-Vertwind.o cdo-Wct.o cdo-Wind.o cdo-Writegrid.o cdo-Writerandom.o cdo-YAR.o cdo-Yearmonstat.o cdo-Ydayarith.o cdo-Ydaypctl.o cdo-Ydaystat.o cdo-Ydrunpctl.o cdo-Ydrunstat.o cdo-Yhourarith.o cdo-Yhourstat.o cdo-Ymonarith.o cdo-Ymonpctl.o cdo-Ymonstat.o cdo-Yseaspctl.o cdo-Yseasstat.o cdo-Zonstat.o cdo-cdo_pthread.o cdo-cdo_vlist.o cdo-cdo_getopt.o cdo-color.o cdo-commandline.o cdo-ecacore.o cdo-ecautil.o cdo-exception.o cdo-expr.o cdo-expr_lex.o cdo-expr_yacc.o cdo-features.o cdo-field.o cdo-field2.o cdo-fieldc.o cdo-fieldmem.o cdo-fieldmer.o cdo-fieldzon.o cdo-fouriertrans.o cdo-gradsdeslib.o cdo-grid.o cdo-grid_area.o cdo-grid_gme.o cdo-grid_lcc.o cdo-grid_rot.o cdo-gridreference.o cdo-griddes.o cdo-griddes_h5.o cdo-griddes_nc.o cdo-hetaeta.o cdo-history.o cdo-institution.o cdo-interpol.o cdo-job.o cdo-juldate.o cdo-kvlist.o cdo-legendre.o cdo-list.o cdo-merge_sort2.o cdo-modules.o cdo-namelist.o cdo-normal.o cdo-nth_element.o cdo-par_io.o cdo-percentiles.o cdo-pipe.o cdo-process.o cdo-pstream.o cdo-pthread_debug.o cdo-readline.o cdo-realtime.o cdo-remaplib.o cdo-remapsort.o cdo-remap_scrip_io.o cdo-remap_search_reg2d.o cdo-remap_search_latbins.o cdo-remap_store_link.o cdo-remap_conserv.o cdo-remap_conserv_scrip.o cdo-remap_distwgt_scrip.o cdo-remap_bicubic_scrip.o cdo-remap_bilinear_scrip.o cdo-stdnametable.o cdo-specspace.o cdo-statistic.o cdo-table.o cdo-text.o cdo-timer.o cdo-userlog.o cdo-util.o cdo-vinterp.o cdo-zaxis.o clipping/cdo-clipping.o clipping/cdo-area.o clipping/cdo-ensure_array_size.o clipping/cdo-geometry_tools.o clipping/cdo-grid_cell.o clipping/cdo-intersection.o clipping/cdo-utils.o ../libcdi/src/libcdi.la -lproj -lnetcdf -lhdf5_hl -lhdf5 -lz -lm
libtool: link: gcc -std=gnu99 -g -O2 -fopenmp -o .libs/cdo.exe cdo-cdo.o cdo-Adisit.o cdo-Arith.o cdo-Arithc.o cdo-Arithdays.o cdo-Arithlat.o cdo-CDItest.o cdo-CDIread.o cdo-CDIwrite.o cdo-Cat.o cdo-Change.o cdo-Change_e5slm.o cdo-Cloudlayer.o cdo-Collgrid.o cdo-Command.o cdo-Comp.o cdo-Compc.o cdo-Complextorect.o cdo-Cond.o cdo-Cond2.o cdo-Condc.o cdo-Consecstat.o cdo-Copy.o cdo-Deltime.o cdo-Derivepar.o cdo-Detrend.o cdo-Diff.o cdo-Distgrid.o cdo-Duplicate.o cdo-EOFs.o cdo-Eof3d.o cdo-EcaIndices.o cdo-Echam5ini.o cdo-Enlarge.o cdo-Enlargegrid.o cdo-Ensstat.o cdo-Ensstat3.o cdo-Ensval.o cdo-Eofcoeff.o cdo-Eofcoeff3d.o cdo-Exprf.o cdo-FC.o cdo-Filedes.o cdo-Fillmiss.o cdo-Filter.o cdo-Fldrms.o cdo-Fldstat.o cdo-Fldstat2.o cdo-Fourier.o cdo-Gengrid.o cdo-Gradsdes.o cdo-Gridboxstat.o cdo-Gridcell.o cdo-Gridsearch.o cdo-Harmonic.o cdo-Hi.o cdo-Histogram.o cdo-Importamsr.o cdo-Importbinary.o cdo-Importcmsaf.o cdo-Importobs.o cdo-Info.o cdo-Input.o cdo-Intgrid.o cdo-Intgridtraj.o cdo-Intlevel.o cdo-Intlevel3d.o cdo-Intntime.o cdo-Inttime.o cdo-Intyear.o cdo-Invert.o cdo-Invertlev.o cdo-Isosurface.o cdo-Kvl.o cdo-Log.o cdo-Maskbox.o cdo-Mastrfu.o cdo-Math.o cdo-Merge.o cdo-Mergegrid.o cdo-Mergetime.o cdo-Merstat.o cdo-Monarith.o cdo-Mrotuv.o cdo-Mrotuvb.o cdo-Ninfo.o cdo-Nmltest.o cdo-Output.o cdo-Outputgmt.o cdo-Pack.o cdo-Pinfo.o cdo-Pressure.o cdo-Regres.o cdo-Remap.o cdo-Remapeta.o cdo-Replace.o cdo-Replacevalues.o cdo-Rhopot.o cdo-Rotuv.o cdo-Runpctl.o cdo-Runstat.o cdo-Seascount.o cdo-Seaspctl.o cdo-Seasstat.o cdo-Selbox.o cdo-Select.o cdo-Seloperator.o cdo-Selrec.o cdo-Seltime.o cdo-Selvar.o cdo-Set.o cdo-Setbox.o cdo-Setgatt.o cdo-Setgrid.o cdo-Sethalo.o cdo-Setmiss.o cdo-Setpartab.o cdo-Setrcaname.o cdo-Settime.o cdo-Setzaxis.o cdo-Showinfo.o cdo-Sinfo.o cdo-Smooth9.o cdo-Sort.o cdo-Sorttimestamp.o cdo-Specinfo.o cdo-Spectral.o cdo-Spectrum.o cdo-Split.o cdo-Splitrec.o cdo-Splitsel.o cdo-Splittime.o cdo-Splityear.o cdo-SSOpar.o cdo-Subtrend.o cdo-Tee.o cdo-Templates.o cdo-Test.o cdo-Tests.o cdo-Timcount.o cdo-Timpctl.o cdo-Timselpctl.o cdo-Timselstat.o cdo-Timsort.o cdo-Timstat.o cdo-Timstat2.o cdo-Timstat3.o cdo-Tinfo.o cdo-Tocomplex.o cdo-Transpose.o cdo-Trend.o cdo-Trms.o cdo-Tstepcount.o cdo-Vardup.o cdo-Vargen.o cdo-Varrms.o cdo-Vertint.o cdo-Vertstat.o cdo-Vertwind.o cdo-Wct.o cdo-Wind.o cdo-Writegrid.o cdo-Writerandom.o cdo-YAR.o cdo-Yearmonstat.o cdo-Ydayarith.o cdo-Ydaypctl.o cdo-Ydaystat.o cdo-Ydrunpctl.o cdo-Ydrunstat.o cdo-Yhourarith.o cdo-Yhourstat.o cdo-Ymonarith.o cdo-Ymonpctl.o cdo-Ymonstat.o cdo-Yseaspctl.o cdo-Yseasstat.o cdo-Zonstat.o cdo-cdo_pthread.o cdo-cdo_vlist.o cdo-cdo_getopt.o cdo-color.o cdo-commandline.o cdo-ecacore.o cdo-ecautil.o cdo-exception.o cdo-expr.o cdo-expr_lex.o cdo-expr_yacc.o cdo-features.o cdo-field.o cdo-field2.o cdo-fieldc.o cdo-fieldmem.o cdo-fieldmer.o cdo-fieldzon.o cdo-fouriertrans.o cdo-gradsdeslib.o cdo-grid.o cdo-grid_area.o cdo-grid_gme.o cdo-grid_lcc.o cdo-grid_rot.o cdo-gridreference.o cdo-griddes.o cdo-griddes_h5.o cdo-griddes_nc.o cdo-hetaeta.o cdo-history.o cdo-institution.o cdo-interpol.o cdo-job.o cdo-juldate.o cdo-kvlist.o cdo-legendre.o cdo-list.o cdo-merge_sort2.o cdo-modules.o cdo-namelist.o cdo-normal.o cdo-nth_element.o cdo-par_io.o cdo-percentiles.o cdo-pipe.o cdo-process.o cdo-pstream.o cdo-pthread_debug.o cdo-readline.o cdo-realtime.o cdo-remaplib.o cdo-remapsort.o cdo-remap_scrip_io.o cdo-remap_search_reg2d.o cdo-remap_search_latbins.o cdo-remap_store_link.o cdo-remap_conserv.o cdo-remap_conserv_scrip.o cdo-remap_distwgt_scrip.o cdo-remap_bicubic_scrip.o cdo-remap_bilinear_scrip.o cdo-stdnametable.o cdo-specspace.o cdo-statistic.o cdo-table.o cdo-text.o cdo-timer.o cdo-userlog.o cdo-util.o cdo-vinterp.o cdo-zaxis.o clipping/cdo-clipping.o clipping/cdo-area.o clipping/cdo-ensure_array_size.o clipping/cdo-geometry_tools.o clipping/cdo-grid_cell.o clipping/cdo-intersection.o clipping/cdo-utils.o ../libcdi/src/.libs/libcdi.a /usr/lib/libproj.dll.a -lnetcdf -lhdf5_hl -lhdf5 -lz -fopenmp
Makefile:775: recipe for target 'cdo.exe' failed
make[2]: Leaving directory '/home/b.mueller/cdo-1.6.7/src'
Makefile:646: recipe for target 'all' failed
make[1]: Leaving directory '/home/b.mueller/cdo-1.6.7/src'
Makefile:443: recipe for target 'all-recursive' failed
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