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RE: libs4cdo make issue under cygwin ยป config.log

Phuong Nam Vu, 2014-03-21 06:39

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.6.3, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-netcdf=/usr/ --with-hdf5=/usr/

## --------- ##
## Platform. ##
## --------- ##

hostname = NaLe
uname -m = i686
uname -r = 1.7.28(0.271/5/3)
uname -s = CYGWIN_NT-6.1-WOW64
uname -v = 2014-02-09 21:06

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/local/bin
PATH: /usr/bin
PATH: /cygdrive/c/Program Files (x86)/AMD APP/bin/x86_64
PATH: /cygdrive/c/Program Files (x86)/AMD APP/bin/x86
PATH: /cygdrive/c/Program Files (x86)/Intel/iCLS Client
PATH: /cygdrive/c/Program Files/Intel/iCLS Client
PATH: /cygdrive/c/Windows/system32
PATH: /cygdrive/c/Windows
PATH: /cygdrive/c/Windows/System32/Wbem
PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0
PATH: /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL
PATH: /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT
PATH: /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL
PATH: /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT
PATH: /cygdrive/c/Program Files (x86)/ATI Technologies/ATI.ACE/Core-Static
PATH: /cygdrive/c/Program Files (x86)/Common Files/DHI/MIKEZero
PATH: /cygdrive/c/Program Files/MATLAB/R2010a/runtime/win64
PATH: /cygdrive/c/Program Files/MATLAB/R2010a/bin
PATH: /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin
PATH: /cygdrive/c/Program Files (x86)/OpenVPN/bin
PATH: /usr/bin
PATH: /usr/bin
PATH: /usr/local/bin
PATH: /usr/lib
PATH: /usr/lib


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2573: checking build system type
configure:2587: result: i686-pc-cygwin
configure:2607: checking host system type
configure:2620: result: i686-pc-cygwin
configure:2658: checking for a BSD-compatible install
configure:2726: result: /usr/bin/install -c
configure:2737: checking whether build environment is sane
configure:2787: result: yes
configure:2928: checking for a thread-safe mkdir -p
configure:2967: result: /usr/bin/mkdir -p
configure:2980: checking for gawk
configure:2996: found /usr/bin/gawk
configure:3007: result: gawk
configure:3018: checking whether make sets $(MAKE)
configure:3040: result: yes
configure:3123: checking whether to enable maintainer-specific portions of Makefiles
configure:3132: result: no
configure:3147: setting up libtool
configure:3195: checking how to print strings
configure:3222: result: printf
configure:3255: checking for style of include used by make
configure:3283: result: GNU
configure:3354: checking for gcc
configure:3370: found /usr/bin/gcc
configure:3381: result: gcc
configure:3610: checking for C compiler version
configure:3619: gcc --version >&5
gcc (GCC) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3630: $? = 0
configure:3619: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.8.2/lto-wrapper.exe
Target: i686-pc-cygwin
Configured with: /cygdrive/i/szsz/tmpp/gcc4/gcc-4.8.2-2/src/gcc-4.8.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc4/gcc-4.8.2-2/src/gcc-4.8.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --disable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --libexecdir=/usr/lib
Thread model: posix
gcc version 4.8.2 (GCC)
configure:3630: $? = 0
configure:3619: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3630: $? = 1
configure:3619: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3630: $? = 1
configure:3650: checking whether the C compiler works
configure:3672: gcc conftest.c >&5
configure:3676: $? = 0
configure:3724: result: yes
configure:3727: checking for C compiler default output file name
configure:3729: result: a.exe
configure:3735: checking for suffix of executables
configure:3742: gcc -o conftest.exe conftest.c >&5
configure:3746: $? = 0
configure:3768: result: .exe
configure:3790: checking whether we are cross compiling
configure:3798: gcc -o conftest.exe conftest.c >&5
configure:3802: $? = 0
configure:3809: ./conftest.exe
configure:3813: $? = 0
configure:3828: result: no
configure:3833: checking for suffix of object files
configure:3855: gcc -c conftest.c >&5
configure:3859: $? = 0
configure:3880: result: o
configure:3884: checking whether we are using the GNU C compiler
configure:3903: gcc -c conftest.c >&5
configure:3903: $? = 0
configure:3912: result: yes
configure:3921: checking whether gcc accepts -g
configure:3941: gcc -c -g conftest.c >&5
configure:3941: $? = 0
configure:3982: result: yes
configure:3999: checking for gcc option to accept ISO C89
configure:4063: gcc -c -g -O2 conftest.c >&5
configure:4063: $? = 0
configure:4076: result: none needed
configure:4098: checking dependency style of gcc
configure:4209: result: gcc3
configure:4224: checking for a sed that does not truncate output
configure:4288: result: /usr/bin/sed
configure:4306: checking for grep that handles long lines and -e
configure:4364: result: /usr/bin/grep
configure:4369: checking for egrep
configure:4431: result: /usr/bin/grep -E
configure:4436: checking for fgrep
configure:4498: result: /usr/bin/grep -F
configure:4533: checking for ld used by gcc
configure:4600: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:4607: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld
configure:4622: result: yes
configure:4634: checking for BSD- or MS-compatible name lister (nm)
configure:4683: result: /usr/bin/nm -B
configure:4813: checking the name lister (/usr/bin/nm -B) interface
configure:4820: gcc -c -g -O2 conftest.c >&5
configure:4823: /usr/bin/nm -B "conftest.o"
configure:4826: output
00000000 b .bss
00000000 d .data
00000000 N .debug_abbrev
00000000 N .debug_aranges
00000000 N .debug_info
00000000 N .debug_line
00000000 r .rdata$zzz
00000000 t .text
00000000 B _some_variable
configure:4833: result: BSD nm
configure:4836: checking whether ln -s works
configure:4840: result: yes
configure:4848: checking the maximum length of command line arguments
configure:4973: result: 8192
configure:4990: checking whether the shell understands some XSI constructs
configure:5000: result: yes
configure:5004: checking whether the shell understands "+="
configure:5010: result: yes
configure:5045: checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files
configure:5052: result: -r
configure:5121: checking for objdump
configure:5137: found /usr/bin/objdump
configure:5148: result: objdump
configure:5180: checking how to recognize dependent libraries
configure:5382: result: file_magic ^x86 archive import|^x86 DLL
configure:5442: checking for ar
configure:5458: found /usr/bin/ar
configure:5469: result: ar
configure:5547: checking for strip
configure:5563: found /usr/bin/strip
configure:5574: result: strip
configure:5646: checking for ranlib
configure:5662: found /usr/bin/ranlib
configure:5673: result: ranlib
configure:5775: checking command to parse /usr/bin/nm -B output from gcc object
configure:5893: gcc -c -g -O2 conftest.c >&5
configure:5896: $? = 0
configure:5900: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5903: $? = 0
cannot find nm_test_var in conftest.nm
configure:5893: gcc -c -g -O2 conftest.c >&5
configure:5896: $? = 0
configure:5900: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' \> conftest.nm
configure:5903: $? = 0
configure:5957: gcc -o conftest.exe -g -O2 conftest.c conftstm.o >&5
configure:5960: $? = 0
configure:5998: result: ok
configure:6839: checking how to run the C preprocessor
configure:6870: gcc -E conftest.c
configure:6870: $? = 0
configure:6884: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:6884: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6909: result: gcc -E
configure:6929: gcc -E conftest.c
configure:6929: $? = 0
configure:6943: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:6943: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6972: checking for ANSI C header files
configure:6992: gcc -c -g -O2 conftest.c >&5
configure:6992: $? = 0
configure:7065: gcc -o conftest.exe -g -O2 conftest.c >&5
configure:7065: $? = 0
configure:7065: ./conftest.exe
configure:7065: $? = 0
configure:7076: result: yes
configure:7089: checking for sys/types.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for sys/stat.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for stdlib.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for string.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for memory.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for strings.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for inttypes.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for stdint.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7089: checking for unistd.h
configure:7089: gcc -c -g -O2 conftest.c >&5
configure:7089: $? = 0
configure:7089: result: yes
configure:7103: checking for dlfcn.h
configure:7103: gcc -c -g -O2 conftest.c >&5
configure:7103: $? = 0
configure:7103: result: yes
configure:7290: checking for objdir
configure:7305: result: .libs
configure:7576: checking if gcc supports -fno-rtti -fno-exceptions
configure:7594: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:7598: $? = 0
configure:7611: result: no
configure:7631: checking for gcc option to produce PIC
configure:7916: result: -DDLL_EXPORT -DPIC
configure:7928: checking if gcc PIC flag -DDLL_EXPORT -DPIC works
configure:7946: gcc -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.c >&5
configure:7950: $? = 0
configure:7963: result: yes
configure:7987: checking if gcc static flag -static works
configure:8015: result: yes
configure:8030: checking if gcc supports -c -o file.o
configure:8051: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:8055: $? = 0
configure:8077: result: yes
configure:8085: checking if gcc supports -c -o file.o
configure:8132: result: yes
configure:8165: checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:9240: result: yes
configure:9277: checking whether -lc should be explicitly linked in
configure:9285: gcc -c -g -O2 conftest.c >&5
configure:9288: $? = 0
configure:9303: gcc -shared conftest.o -v -o ./conftest -Wl,--enable-auto-image-base -Xlinker --out-implib -Xlinker conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:9306: $? = 1
configure:9320: result: yes
configure:9485: checking dynamic linker characteristics
configure:10162: result: Win32 ld.exe
configure:10269: checking how to hardcode library paths into programs
configure:10294: result: immediate
configure:10834: checking whether stripping libraries is possible
configure:10839: result: yes
configure:10874: checking if libtool supports shared libraries
configure:10876: result: yes
configure:10879: checking whether to build shared libraries
configure:10900: result: yes
configure:10903: checking whether to build static libraries
configure:10907: result: yes
configure:10987: checking for gcc
configure:11014: result: gcc
configure:11036: checking for gcc option to accept ISO C99
configure:11185: gcc -c -g -O2 conftest.c >&5
conftest.c:73:29: error: expected ';', ',' or ')' before 'text'
test_restrict (ccp restrict text)
^
conftest.c: In function 'main':
conftest.c:127:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
char *restrict newvar = "Another string";
^
conftest.c:127:18: error: 'newvar' undeclared (first use in this function)
conftest.c:127:18: note: each undeclared identifier is reported only once for each function it appears in
conftest.c:137:3: error: 'for' loop initial declarations are only allowed in C99 mode
for (int i = 0; i < ia->datasize; ++i)
^
conftest.c:137:3: note: use option -std=c99 or -std=gnu99 to compile your code
configure:11185: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:11185: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:11185: $? = 0
configure:11205: result: -std=gnu99
configure:11214: checking whether gcc -std=gnu99 and cc understand -c and -o together
configure:11245: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11249: $? = 0
configure:11255: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11259: $? = 0
configure:11270: cc -c conftest.c >&5
configure:11274: $? = 0
configure:11282: cc -c conftest.c -o conftest2.o >&5
configure:11286: $? = 0
configure:11292: cc -c conftest.c -o conftest2.o >&5
configure:11296: $? = 0
configure:11314: result: yes
configure:11382: checking for ar
configure:11409: result: ar
configure:11566: checking for ld
configure:11593: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:11658: checking for nm
configure:11685: result: /usr/bin/nm -B
configure:11750: checking for ar
configure:11777: result: ar
configure:11842: checking for as
configure:11858: found /usr/bin/as
configure:11869: result: as
configure:11934: checking for dlltool
configure:11950: found /usr/bin/dlltool
configure:11961: result: dlltool
configure:12026: checking for objdump
configure:12053: result: objdump
configure:12118: checking for strip
configure:12145: result: strip
configure:12210: checking for ranlib
configure:12237: result: ranlib
configure:12318: checking for g++
configure:12334: found /usr/bin/g++
configure:12345: result: g++
configure:12372: checking for C++ compiler version
configure:12381: g++ --version >&5
g++ (GCC) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12392: $? = 0
configure:12381: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.8.2/lto-wrapper.exe
Target: i686-pc-cygwin
Configured with: /cygdrive/i/szsz/tmpp/gcc4/gcc-4.8.2-2/src/gcc-4.8.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc4/gcc-4.8.2-2/src/gcc-4.8.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --disable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --libexecdir=/usr/lib
Thread model: posix
gcc version 4.8.2 (GCC)
configure:12392: $? = 0
configure:12381: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:12392: $? = 1
configure:12381: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:12392: $? = 1
configure:12396: checking whether we are using the GNU C++ compiler
configure:12415: g++ -c conftest.cpp >&5
configure:12415: $? = 0
configure:12424: result: yes
configure:12433: checking whether g++ accepts -g
configure:12453: g++ -c -g conftest.cpp >&5
configure:12453: $? = 0
configure:12494: result: yes
configure:12519: checking dependency style of g++
configure:12630: result: gcc3
configure:12653: checking how to run the C++ preprocessor
configure:12680: g++ -E conftest.cpp
configure:12680: $? = 0
configure:12694: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:12694: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12719: result: g++ -E
configure:12739: g++ -E conftest.cpp
configure:12739: $? = 0
configure:12753: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:12753: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12921: checking for ld used by g++
configure:12988: result: /usr/i686-pc-cygwin/bin/ld.exe
configure:12995: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld
configure:13010: result: yes
configure:13065: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:13997: result: yes
configure:14025: g++ -c -g -O2 conftest.cpp >&5
configure:14028: $? = 0
configure:14210: checking for g++ option to produce PIC
configure:14532: result: -DDLL_EXPORT -DPIC
configure:14541: checking if g++ PIC flag -DDLL_EXPORT -DPIC works
configure:14559: g++ -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.cpp >&5
configure:14563: $? = 0
configure:14576: result: yes
configure:14597: checking if g++ static flag -static works
configure:14625: result: yes
configure:14637: checking if g++ supports -c -o file.o
configure:14658: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:14662: $? = 0
configure:14684: result: yes
configure:14689: checking if g++ supports -c -o file.o
configure:14736: result: yes
configure:14766: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries
configure:14794: result: yes
configure:14937: checking dynamic linker characteristics
configure:15548: result: Win32 ld.exe
configure:15601: checking how to hardcode library paths into programs
configure:15626: result: immediate
configure:15677: checking for special C compiler options needed for large files
configure:15722: result: no
configure:15728: checking for _FILE_OFFSET_BITS value needed for large files
configure:15753: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15753: $? = 0
configure:15785: result: no
configure:15876: checking for stdlib.h
configure:15876: result: yes
configure:15876: checking for unistd.h
configure:15876: result: yes
configure:15876: checking for sys/param.h
configure:15876: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15876: $? = 0
configure:15876: result: yes
configure:15896: checking for getpagesize
configure:15896: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:15896: $? = 0
configure:15896: result: yes
configure:15905: checking for working mmap
configure:16052: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16052: $? = 0
configure:16052: ./conftest.exe
configure:16052: $? = 0
configure:16062: result: yes
configure:16073: checking for malloc in -lmalloc
configure:16098: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lmalloc >&5
conftest.c:35:6: warning: conflicting types for built-in function 'malloc' [enabled by default]
char malloc ();
^
/usr/lib/gcc/i686-pc-cygwin/4.8.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lmalloc
collect2: error: ld returned 1 exit status
configure:16098: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:16107: result: no
configure:16120: checking for struct stat.st_blksize
configure:16120: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16120: $? = 0
configure:16120: result: yes
configure:16134: checking sys/resource.h usability
configure:16134: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16134: $? = 0
configure:16134: result: yes
configure:16134: checking sys/resource.h presence
configure:16134: gcc -E conftest.c
configure:16134: $? = 0
configure:16134: result: yes
configure:16134: checking for sys/resource.h
configure:16134: result: yes
configure:16146: checking sys/times.h usability
configure:16146: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16146: $? = 0
configure:16146: result: yes
configure:16146: checking sys/times.h presence
configure:16146: gcc -E conftest.c
configure:16146: $? = 0
configure:16146: result: yes
configure:16146: checking for sys/times.h
configure:16146: result: yes
configure:16158: checking malloc.h usability
configure:16158: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16158: $? = 0
configure:16158: result: yes
configure:16158: checking malloc.h presence
configure:16158: gcc -E conftest.c
configure:16158: $? = 0
configure:16158: result: yes
configure:16158: checking for malloc.h
configure:16158: result: yes
configure:16170: checking glob.h usability
configure:16170: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16170: $? = 0
configure:16170: result: yes
configure:16170: checking glob.h presence
configure:16170: gcc -E conftest.c
configure:16170: $? = 0
configure:16170: result: yes
configure:16170: checking for glob.h
configure:16170: result: yes
configure:16184: checking for mallinfo
configure:16184: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16184: $? = 0
configure:16184: result: yes
configure:16195: checking whether isnan is declared
configure:16195: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16195: $? = 0
configure:16195: result: yes
configure:16210: checking for getrlimit
configure:16210: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16210: $? = 0
configure:16210: result: yes
configure:16221: checking for gethostname
configure:16221: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5
configure:16221: $? = 0
configure:16221: result: yes
configure:16289: checking for floor in -lm
configure:16314: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5
conftest.c:48:6: warning: conflicting types for built-in function 'floor' [enabled by default]
char floor ();
^
configure:16314: $? = 0
configure:16323: result: yes
configure:16336: checking for DATA support
configure:16353: result: yes
configure:16550: checking for the pthreads library -lpthreads
configure:16588: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lpthreads -lm >&5
/usr/lib/gcc/i686-pc-cygwin/4.8.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
configure:16588: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16597: result: no
configure:16495: checking whether pthreads work without any flags
configure:16588: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5
configure:16588: $? = 0
configure:16597: result: yes
configure:16616: checking for joinable pthread attribute
configure:16631: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5
configure:16631: $? = 0
configure:16637: result: PTHREAD_CREATE_JOINABLE
configure:16647: checking if more special flags are required for pthreads
configure:16654: result: no
configure:16975: checking zlib.h usability
configure:16975: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16975: $? = 0
configure:16975: result: yes
configure:16975: checking zlib.h presence
configure:16975: gcc -E conftest.c
configure:16975: $? = 0
configure:16975: result: yes
configure:16975: checking for zlib.h
configure:16975: result: yes
configure:16985: checking for library containing deflate
configure:17016: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5
/tmp/ccp3hOK2.o: In function `main':
/cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/conftest.c:56: undefined reference to `deflate'
collect2: error: ld returned 1 exit status
configure:17016: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:17016: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lz -lm >&5
configure:17016: $? = 0
configure:17033: result: -lz
configure:17223: checking for szlib library
configure:17225: result: suppressed
configure:17391: checking hdf5.h usability
configure:17391: gcc -std=gnu99 -c -g -O2 -I/usr//include conftest.c >&5
conftest.c:79:18: fatal error: hdf5.h: No such file or directory
#include <hdf5.h>
^
compilation terminated.
configure:17391: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <hdf5.h>
configure:17391: result: no
configure:17391: checking hdf5.h presence
configure:17391: gcc -E -I/usr//include conftest.c
conftest.c:46:18: fatal error: hdf5.h: No such file or directory
#include <hdf5.h>
^
compilation terminated.
configure:17391: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
| #include <hdf5.h>
configure:17391: result: no
configure:17391: checking for hdf5.h
configure:17391: result: no
configure:17401: checking for library containing H5Fopen
configure:17432: gcc -std=gnu99 -o conftest.exe -g -O2 -I/usr//include -L/usr//lib conftest.c -lz -lm >&5
/tmp/ccnU3NWQ.o: In function `main':
/cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/conftest.c:57: undefined reference to `H5Fopen'
collect2: error: ld returned 1 exit status
configure:17432: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17432: gcc -std=gnu99 -o conftest.exe -g -O2 -I/usr//include -L/usr//lib conftest.c -lhdf5 -lz -lm >&5
/usr/lib/gcc/i686-pc-cygwin/4.8.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lhdf5
collect2: error: ld returned 1 exit status
configure:17432: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.3"
| #define PACKAGE_STRING "cdo 1.6.3"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.8.2"
| #define USER_NAME "DELL"
| #define HOST_NAME "NaLe"
| #define SYSTEM_TYPE "i686-pc-cygwin"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17449: result: no
configure:17458: error: Cannot link to hdf5! It is required for netCDF4.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-cygwin
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=.exe
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_hdf5_h=no
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=i686-pc-cygwin
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=dlltool
ac_cv_prog_ac_ct_LD=/usr/i686-pc-cygwin/bin/ld.exe
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5Fopen=no
ac_cv_search_deflate=-lz
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_archive_cmds_need_lc=yes
lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
lt_cv_file_magic_cmd=func_win32_libid
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/i686-pc-cygwin/bin/ld.exe
lt_cv_path_LDCXX=/usr/i686-pc-cygwin/bin/ld.exe
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=8192

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/missing --run autoconf'
AUTOHEADER='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/missing --run autoheader'
AUTOMAKE='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/missing --run automake-1.11'
AWK='gawk'
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 '
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS='-I/usr//include '
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='cygpath -w'
DEFS=''
DEPDIR='.deps'
DLLTOOL='dlltool'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX=''
ENABLE_DATA='yes'
ENABLE_EXTRA=''
ENABLE_GRIB=''
ENABLE_IEG=''
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_SERVICE=''
EXEEXT='.exe'
FCFLAGS=''
FGREP='/usr/bin/grep -F'
GREP='/usr/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT='/usr/'
HOST_NAME='NaLe'
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=''
LD='/usr/i686-pc-cygwin/bin/ld.exe'
LDFLAGS='-L/usr//lib '
LIBOBJS=''
LIBS='-lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/missing --run makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=''
NETCDF_LIBS=''
NETCDF_ROOT=''
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.6.3'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.6.3'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc -std=gnu99'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='i686-pc-cygwin'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USER_NAME='DELL'
VERSION='1.6.3'
XML2_LIBS=''
ZLIB_INCLUDE=''
ZLIB_LIBS=' -lz'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='i686-pc-cygwin'
build_alias=''
build_cpu='i686'
build_os='cygwin'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='i686-pc-cygwin'
host_alias=''
host_cpu='i686'
host_os='cygwin'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /cygdrive/e/setups/cdo_cygwin/cdo-1.6.3/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/usr/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.6.3"
#define PACKAGE_STRING "cdo 1.6.3"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.6.3"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_MALLINFO 1
#define HAVE_DECL_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.8.2"
#define USER_NAME "DELL"
#define HOST_NAME "NaLe"
#define SYSTEM_TYPE "i686-pc-cygwin"
#define HAVE_LIBM 1
#define ENABLE_DATA 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1

configure: exit 1
    (1-1/1)