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RE: Trouble compiling cdo 1.6.1-rc6 with libs4cdo-0.0.10 ยป config.log

My config.log - Raphael Idalgo Mena, 2013-09-04 20:15

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.5.9, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --prefix=/home/leoc1/local/cdo --with-proj=/home/leoc1/local/cdo --with-grib_api=/home/leoc1/local/cdo --with-jasper=/home/leoc1/local/cdo --with-netcdf=/home/leoc1/local/cdo --with-hdf5=/home/leoc1/local/cdo --with-zlib=/home/leoc1/local/cdo --with-szlib=/home/leoc1/local/cdo --with-threads=/home/leoc1/local/cdo --enable-cgribex=no CFLAGS=-DHAVE_LIBNC_DAP

## --------- ##
## Platform. ##
## --------- ##

hostname = leoc1
uname -m = x86_64
uname -r = 3.5.0-32-generic
uname -s = Linux
uname -v = #53~precise1-Ubuntu SMP Wed May 29 20:33:37 UTC 2013

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/lib/lightdm/lightdm
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2564: checking build system type
configure:2578: result: x86_64-unknown-linux-gnu
configure:2598: checking host system type
configure:2611: result: x86_64-unknown-linux-gnu
configure:2649: checking for a BSD-compatible install
configure:2717: result: /usr/bin/install -c
configure:2728: checking whether build environment is sane
configure:2778: result: yes
configure:2919: checking for a thread-safe mkdir -p
configure:2958: result: /bin/mkdir -p
configure:2971: checking for gawk
configure:3001: result: no
configure:2971: checking for mawk
configure:2987: found /usr/bin/mawk
configure:2998: result: mawk
configure:3009: checking whether make sets $(MAKE)
configure:3031: result: yes
configure:3114: checking whether to enable maintainer-specific portions of Makefiles
configure:3123: result: no
configure:3138: setting up libtool
configure:3186: checking how to print strings
configure:3213: result: printf
configure:3246: checking for style of include used by make
configure:3274: result: GNU
configure:3345: checking for gcc
configure:3361: found /usr/bin/gcc
configure:3372: result: gcc
configure:3601: checking for C compiler version
configure:3610: gcc --version >&5
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3621: $? = 0
configure:3610: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
configure:3621: $? = 0
configure:3610: gcc -V >&5
gcc: error: unrecognized option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3621: $? = 4
configure:3610: gcc -qversion >&5
gcc: error: unrecognized option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3621: $? = 4
configure:3641: checking whether the C compiler works
configure:3663: gcc -DHAVE_LIBNC_DAP conftest.c >&5
configure:3667: $? = 0
configure:3715: result: yes
configure:3718: checking for C compiler default output file name
configure:3720: result: a.out
configure:3726: checking for suffix of executables
configure:3733: gcc -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:3737: $? = 0
configure:3759: result:
configure:3781: checking whether we are cross compiling
configure:3789: gcc -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:3793: $? = 0
configure:3800: ./conftest
configure:3804: $? = 0
configure:3819: result: no
configure:3824: checking for suffix of object files
configure:3846: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:3850: $? = 0
configure:3871: result: o
configure:3875: checking whether we are using the GNU C compiler
configure:3894: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:3894: $? = 0
configure:3903: result: yes
configure:3912: checking whether gcc accepts -g
configure:3932: gcc -c -g conftest.c >&5
configure:3932: $? = 0
configure:3973: result: yes
configure:3990: checking for gcc option to accept ISO C89
configure:4054: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:4054: $? = 0
configure:4067: result: none needed
configure:4089: checking dependency style of gcc
configure:4200: result: gcc3
configure:4215: checking for a sed that does not truncate output
configure:4279: result: /bin/sed
configure:4297: checking for grep that handles long lines and -e
configure:4355: result: /bin/grep
configure:4360: checking for egrep
configure:4422: result: /bin/grep -E
configure:4427: checking for fgrep
configure:4489: result: /bin/grep -F
configure:4524: checking for ld used by gcc
configure:4591: result: /usr/bin/ld
configure:4598: checking if the linker (/usr/bin/ld) is GNU ld
configure:4613: result: yes
configure:4625: checking for BSD- or MS-compatible name lister (nm)
configure:4674: result: /usr/bin/nm -B
configure:4804: checking the name lister (/usr/bin/nm -B) interface
configure:4811: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:4814: /usr/bin/nm -B "conftest.o"
configure:4817: output
0000000000000000 B some_variable
configure:4824: result: BSD nm
configure:4827: checking whether ln -s works
configure:4831: result: yes
configure:4839: checking the maximum length of command line arguments
configure:4964: result: 1572864
configure:4981: checking whether the shell understands some XSI constructs
configure:4991: result: yes
configure:4995: checking whether the shell understands "+="
configure:5001: result: yes
configure:5036: checking for /usr/bin/ld option to reload object files
configure:5043: result: -r
configure:5112: checking for objdump
configure:5128: found /usr/bin/objdump
configure:5139: result: objdump
configure:5171: checking how to recognize dependent libraries
configure:5373: result: pass_all
configure:5433: checking for ar
configure:5449: found /usr/bin/ar
configure:5460: result: ar
configure:5538: checking for strip
configure:5554: found /usr/bin/strip
configure:5565: result: strip
configure:5637: checking for ranlib
configure:5653: found /usr/bin/ranlib
configure:5664: result: ranlib
configure:5766: checking command to parse /usr/bin/nm -B output from gcc object
configure:5884: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:5887: $? = 0
configure:5891: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5894: $? = 0
configure:5948: gcc -o conftest -DHAVE_LIBNC_DAP conftest.c conftstm.o >&5
configure:5951: $? = 0
configure:5989: result: ok
configure:6085: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:6088: $? = 0
configure:6830: checking how to run the C preprocessor
configure:6861: gcc -E conftest.c
configure:6861: $? = 0
configure:6875: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:6875: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6900: result: gcc -E
configure:6920: gcc -E conftest.c
configure:6920: $? = 0
configure:6934: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:6934: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6963: checking for ANSI C header files
configure:6983: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:6983: $? = 0
configure:7056: gcc -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:7056: $? = 0
configure:7056: ./conftest
configure:7056: $? = 0
configure:7067: result: yes
configure:7080: checking for sys/types.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for sys/stat.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for stdlib.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for string.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for memory.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for strings.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for inttypes.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for stdint.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7080: checking for unistd.h
configure:7080: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7080: $? = 0
configure:7080: result: yes
configure:7094: checking for dlfcn.h
configure:7094: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:7094: $? = 0
configure:7094: result: yes
configure:7281: checking for objdir
configure:7296: result: .libs
configure:7567: checking if gcc supports -fno-rtti -fno-exceptions
configure:7585: gcc -c -DHAVE_LIBNC_DAP -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:7589: $? = 0
configure:7602: result: no
configure:7622: checking for gcc option to produce PIC
configure:7907: result: -fPIC -DPIC
configure:7919: checking if gcc PIC flag -fPIC -DPIC works
configure:7937: gcc -c -DHAVE_LIBNC_DAP -fPIC -DPIC -DPIC conftest.c >&5
configure:7941: $? = 0
configure:7954: result: yes
configure:7978: checking if gcc static flag -static works
configure:8006: result: yes
configure:8021: checking if gcc supports -c -o file.o
configure:8042: gcc -c -DHAVE_LIBNC_DAP -o out/conftest2.o conftest.c >&5
configure:8046: $? = 0
configure:8068: result: yes
configure:8076: checking if gcc supports -c -o file.o
configure:8123: result: yes
configure:8156: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:9231: result: yes
configure:9268: checking whether -lc should be explicitly linked in
configure:9276: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:9279: $? = 0
configure:9294: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:9297: $? = 0
configure:9311: result: no
configure:9476: checking dynamic linker characteristics
configure:9931: gcc -o conftest -DHAVE_LIBNC_DAP -Wl,-rpath -Wl,/foo conftest.c >&5
configure:9931: $? = 0
configure:10153: result: GNU/Linux ld.so
configure:10260: checking how to hardcode library paths into programs
configure:10285: result: immediate
configure:10825: checking whether stripping libraries is possible
configure:10830: result: yes
configure:10865: checking if libtool supports shared libraries
configure:10867: result: yes
configure:10870: checking whether to build shared libraries
configure:10891: result: yes
configure:10894: checking whether to build static libraries
configure:10898: result: yes
configure:10978: checking for gcc
configure:11005: result: gcc
configure:11027: checking for gcc option to accept ISO C99
configure:11176: gcc -c -DHAVE_LIBNC_DAP conftest.c >&5
conftest.c:73:29: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:127:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:127:18: error: 'newvar' undeclared (first use in this function)
conftest.c:127:18: note: each undeclared identifier is reported only once for each function it appears in
conftest.c:137:3: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:137:3: note: use option -std=c99 or -std=gnu99 to compile your code
configure:11176: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:11176: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:11176: $? = 0
configure:11196: result: -std=gnu99
configure:11205: checking whether gcc -std=gnu99 and cc understand -c and -o together
configure:11236: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11240: $? = 0
configure:11246: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11250: $? = 0
configure:11261: cc -c conftest.c >&5
configure:11265: $? = 0
configure:11273: cc -c conftest.c -o conftest2.o >&5
configure:11277: $? = 0
configure:11283: cc -c conftest.c -o conftest2.o >&5
configure:11287: $? = 0
configure:11305: result: yes
configure:11374: checking for ar
configure:11401: result: ar
configure:11558: checking for ld
configure:11585: result: /usr/bin/ld -m elf_x86_64
configure:11650: checking for nm
configure:11677: result: /usr/bin/nm -B
configure:11742: checking for ar
configure:11769: result: ar
configure:11834: checking for as
configure:11850: found /usr/bin/as
configure:11861: result: as
configure:11926: checking for dlltool
configure:11956: result: no
configure:12018: checking for objdump
configure:12045: result: objdump
configure:12110: checking for strip
configure:12137: result: strip
configure:12202: checking for ranlib
configure:12229: result: ranlib
configure:12310: checking for g++
configure:12326: found /usr/bin/g++
configure:12337: result: g++
configure:12364: checking for C++ compiler version
configure:12373: g++ --version >&5
g++ (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12384: $? = 0
configure:12373: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
configure:12384: $? = 0
configure:12373: g++ -V >&5
g++: error: unrecognized option '-V'
g++: fatal error: no input files
compilation terminated.
configure:12384: $? = 4
configure:12373: g++ -qversion >&5
g++: error: unrecognized option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:12384: $? = 4
configure:12388: checking whether we are using the GNU C++ compiler
configure:12407: g++ -c conftest.cpp >&5
configure:12407: $? = 0
configure:12416: result: yes
configure:12425: checking whether g++ accepts -g
configure:12445: g++ -c -g conftest.cpp >&5
configure:12445: $? = 0
configure:12486: result: yes
configure:12511: checking dependency style of g++
configure:12622: result: gcc3
configure:12645: checking how to run the C++ preprocessor
configure:12672: g++ -E conftest.cpp
configure:12672: $? = 0
configure:12686: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:12686: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12711: result: g++ -E
configure:12731: g++ -E conftest.cpp
configure:12731: $? = 0
configure:12745: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:12745: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12913: checking for ld used by g++
configure:12980: result: /usr/bin/ld -m elf_x86_64
configure:12987: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13002: result: yes
configure:13057: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:13989: result: yes
configure:14017: g++ -c -g -O2 conftest.cpp >&5
configure:14020: $? = 0
configure:14202: checking for g++ option to produce PIC
configure:14524: result: -fPIC -DPIC
configure:14533: checking if g++ PIC flag -fPIC -DPIC works
configure:14551: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14555: $? = 0
configure:14568: result: yes
configure:14589: checking if g++ static flag -static works
configure:14617: result: yes
configure:14629: checking if g++ supports -c -o file.o
configure:14650: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:14654: $? = 0
configure:14676: result: yes
configure:14681: checking if g++ supports -c -o file.o
configure:14728: result: yes
configure:14758: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14786: result: yes
configure:14929: checking dynamic linker characteristics
configure:15540: result: GNU/Linux ld.so
configure:15593: checking how to hardcode library paths into programs
configure:15618: result: immediate
configure:15669: checking for special C compiler options needed for large files
configure:15714: result: no
configure:15720: checking for _FILE_OFFSET_BITS value needed for large files
configure:15745: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:15745: $? = 0
configure:15777: result: no
configure:15868: checking for stdlib.h
configure:15868: result: yes
configure:15868: checking for unistd.h
configure:15868: result: yes
configure:15868: checking for sys/param.h
configure:15868: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:15868: $? = 0
configure:15868: result: yes
configure:15888: checking for getpagesize
configure:15888: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:15888: $? = 0
configure:15888: result: yes
configure:15897: checking for working mmap
configure:16044: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:16044: $? = 0
configure:16044: ./conftest
configure:16044: $? = 0
configure:16054: result: yes
configure:16065: checking for malloc in -lmalloc
configure:16090: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c -lmalloc >&5
conftest.c:35:6: warning: conflicting types for built-in function 'malloc' [enabled by default]
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:16090: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:16099: result: no
configure:16112: checking for struct stat.st_blksize
configure:16112: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:16112: $? = 0
configure:16112: result: yes
configure:16126: checking sys/resource.h usability
configure:16126: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:16126: $? = 0
configure:16126: result: yes
configure:16126: checking sys/resource.h presence
configure:16126: gcc -E conftest.c
configure:16126: $? = 0
configure:16126: result: yes
configure:16126: checking for sys/resource.h
configure:16126: result: yes
configure:16138: checking sys/times.h usability
configure:16138: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:16138: $? = 0
configure:16138: result: yes
configure:16138: checking sys/times.h presence
configure:16138: gcc -E conftest.c
configure:16138: $? = 0
configure:16138: result: yes
configure:16138: checking for sys/times.h
configure:16138: result: yes
configure:16150: checking malloc.h usability
configure:16150: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:16150: $? = 0
configure:16150: result: yes
configure:16150: checking malloc.h presence
configure:16150: gcc -E conftest.c
configure:16150: $? = 0
configure:16150: result: yes
configure:16150: checking for malloc.h
configure:16150: result: yes
configure:16164: checking for mallinfo
configure:16164: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:16164: $? = 0
configure:16164: result: yes
configure:16175: checking whether isnan is declared
configure:16175: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP conftest.c >&5
configure:16175: $? = 0
configure:16175: result: yes
configure:16190: checking for getrlimit
configure:16190: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:16190: $? = 0
configure:16190: result: yes
configure:16201: checking for gethostname
configure:16201: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c >&5
configure:16201: $? = 0
configure:16201: result: yes
configure:16268: checking for floor in -lm
configure:16293: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP conftest.c -lm >&5
conftest.c:47:6: warning: conflicting types for built-in function 'floor' [enabled by default]
configure:16293: $? = 0
configure:16302: result: yes
configure:16702: checking pthread.h usability
configure:16702: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include conftest.c >&5
configure:16702: $? = 0
configure:16702: result: yes
configure:16702: checking pthread.h presence
configure:16702: gcc -E -I/home/leoc1/local/cdo/include conftest.c
configure:16702: $? = 0
configure:16702: result: yes
configure:16702: checking for pthread.h
configure:16702: result: yes
configure:16712: checking for pthread_create in -lpthread
configure:16737: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib conftest.c -lpthread -lm >&5
configure:16737: $? = 0
configure:16746: result: yes
configure:16855: checking zlib.h usability
configure:16855: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:16855: $? = 0
configure:16855: result: yes
configure:16855: checking zlib.h presence
configure:16855: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:16855: $? = 0
configure:16855: result: yes
configure:16855: checking for zlib.h
configure:16855: result: yes
configure:16865: checking for library containing deflate
configure:16896: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lpthread -lm >&5
/tmp/ccxgCj7w.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `deflate'
collect2: ld returned 1 exit status
configure:16896: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:16896: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lz -lpthread -lm >&5
configure:16896: $? = 0
configure:16913: result: -lz
configure:17099: checking szlib.h usability
configure:17099: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:17099: $? = 0
configure:17099: result: yes
configure:17099: checking szlib.h presence
configure:17099: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:17099: $? = 0
configure:17099: result: yes
configure:17099: checking for szlib.h
configure:17099: result: yes
configure:17109: checking for library containing SZ_BufftoBuffCompress
configure:17140: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lz -lpthread -lm >&5
/tmp/ccJ12S8F.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `SZ_BufftoBuffCompress'
collect2: ld returned 1 exit status
configure:17140: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char SZ_BufftoBuffCompress ();
| int
| main ()
| {
| return SZ_BufftoBuffCompress ();
| ;
| return 0;
| }
configure:17140: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lsz -lz -lpthread -lm >&5
configure:17140: $? = 0
configure:17157: result: -lsz
configure:17347: checking hdf5.h usability
configure:17347: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:17347: $? = 0
configure:17347: result: yes
configure:17347: checking hdf5.h presence
configure:17347: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:17347: $? = 0
configure:17347: result: yes
configure:17347: checking for hdf5.h
configure:17347: result: yes
configure:17357: checking for library containing H5Fopen
configure:17388: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lsz -lz -lpthread -lm >&5
/tmp/cc6K5eeL.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5Fopen'
collect2: ld returned 1 exit status
configure:17388: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17388: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17388: $? = 0
configure:17405: result: -lhdf5
configure:17417: checking for library containing H5DSis_scale
configure:17448: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/cchm42qS.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `H5DSis_scale'
collect2: ld returned 1 exit status
configure:17448: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:17448: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17448: $? = 0
configure:17465: result: -lhdf5_hl
configure:17666: checking netcdf.h usability
configure:17666: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:17666: $? = 0
configure:17666: result: yes
configure:17666: checking netcdf.h presence
configure:17666: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:17666: $? = 0
configure:17666: result: yes
configure:17666: checking for netcdf.h
configure:17666: result: yes
configure:17676: checking for library containing nc_open
configure:17707: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccWMG0h5.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:17707: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:17707: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17707: $? = 0
configure:17724: result: -lnetcdf
configure:17739: checking nc-config script
configure:17743: checking for nc-config
configure:17773: result: no
configure:17816: result: Could not find nc-config! go on with default configuration
configure:17928: checking for library containing jas_stream_memopen
configure:17959: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccbtZcmd.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `jas_stream_memopen'
collect2: ld returned 1 exit status
configure:17959: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char jas_stream_memopen ();
| int
| main ()
| {
| return jas_stream_memopen ();
| ;
| return 0;
| }
configure:17959: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17959: $? = 0
configure:17976: result: -ljasper
configure:18096: checking grib_api.h usability
configure:18096: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:18096: $? = 0
configure:18096: result: yes
configure:18096: checking grib_api.h presence
configure:18096: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:18096: $? = 0
configure:18096: result: yes
configure:18096: checking for grib_api.h
configure:18096: result: yes
configure:18106: checking for library containing grib_get_message
configure:18137: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccplvJeo.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `grib_get_message'
collect2: ld returned 1 exit status
configure:18137: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:18137: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:18137: $? = 0
configure:18154: result: -lgrib_api
configure:18185: checking for GRIB support
configure:18202: result: yes
configure:18208: checking for CGRIBEX support
configure:18225: result: no
configure:18231: checking for SERVICE support
configure:18248: result: yes
configure:18254: checking for EXTRA support
configure:18271: result: yes
configure:18277: checking for IEG support
configure:18294: result: yes
configure:18393: checking proj_api.h usability
configure:18393: gcc -std=gnu99 -c -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c >&5
configure:18393: $? = 0
configure:18393: result: yes
configure:18393: checking proj_api.h presence
configure:18393: gcc -E -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include conftest.c
configure:18393: $? = 0
configure:18393: result: yes
configure:18393: checking for proj_api.h
configure:18393: result: yes
configure:18403: checking for library containing pj_init
configure:18434: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/cc4Q5OCH.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `pj_init'
collect2: ld returned 1 exit status
configure:18434: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.9"
| #define PACKAGE_STRING "cdo 1.5.9"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.9"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
| #define USER_NAME "leoc1"
| #define HOST_NAME "leoc1"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pj_init ();
| int
| main ()
| {
| return pj_init ();
| ;
| return 0;
| }
configure:18434: gcc -std=gnu99 -o conftest -DHAVE_LIBNC_DAP -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:18434: $? = 0
configure:18451: result: -lproj
configure:18656: checking for the UDUNITS2 library
configure:18658: result: suppressed
configure:18838: checking for MAGICS library
configure:18840: result: suppressed
configure:19043: checking for XML2 library
configure:19045: result: suppressed
configure:19064: checking for build a separate CDI library and link CDO to it
configure:19081: result: no
configure:19105: checking for building an additional static CDO binary
configure:19118: result: no
configure:19297: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by cdo config.status 1.5.9, which was
generated by GNU Autoconf 2.68. Invocation command line was

CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status

on leoc1

config.status:1237: creating Makefile
config.status:1237: creating src/Makefile
config.status:1237: creating contrib/Makefile
config.status:1237: creating test/Makefile
config.status:1237: creating cdo.spec
config.status:1237: creating cdo.settings
config.status:1237: creating src/config.h
config.status:1466: executing depfiles commands
config.status:1466: executing libtool commands
configure:21870: === configuring in libcdi (/home/leoc1/local/cdo-1.5.9/libcdi)
configure:21933: running /bin/bash ./configure --disable-option-checking '--prefix=/home/leoc1/local/cdo' '--with-proj=/home/leoc1/local/cdo' '--with-grib_api=/home/leoc1/local/cdo' '--with-jasper=/home/leoc1/local/cdo' '--with-netcdf=/home/leoc1/local/cdo' '--with-hdf5=/home/leoc1/local/cdo' '--with-zlib=/home/leoc1/local/cdo' '--with-szlib=/home/leoc1/local/cdo' '--with-threads=/home/leoc1/local/cdo' '--enable-cgribex=no' 'CFLAGS=-DHAVE_LIBNC_DAP' --cache-file=/dev/null --srcdir=.
configure:21952: CDO is configured with the following options:
configure:21971:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-DHAVE_LIBNC_DAP
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_grib_api_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_proj_api_h=yes
ac_cv_header_pthread_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_lib_pthread_pthread_create=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_SZ_BufftoBuffCompress=-lsz
ac_cv_search_deflate=-lz
ac_cv_search_grib_get_message=-lgrib_api
ac_cv_search_jas_stream_memopen=-ljasper
ac_cv_search_nc_open=-lnetcdf
ac_cv_search_pj_init=-lproj
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/leoc1/local/cdo-1.5.9/config/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/leoc1/local/cdo-1.5.9/config/missing --run autoconf'
AUTOHEADER='${SHELL} /home/leoc1/local/cdo-1.5.9/config/missing --run autoheader'
AUTOMAKE='${SHELL} /home/leoc1/local/cdo-1.5.9/config/missing --run automake-1.11'
AWK='mawk'
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-DHAVE_LIBNC_DAP'
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS='-I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include -I/home/leoc1/local/cdo/include'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL=':'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='no'
ENABLE_EXTRA='yes'
ENABLE_GRIB='yes'
ENABLE_IEG='yes'
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE='#'
ENABLE_SERVICE='yes'
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=' -I/home/leoc1/local/cdo/include'
GRIB_API_LIBS=' -L/home/leoc1/local/cdo/lib -lgrib_api'
HDF5_INCLUDE=' -I/home/leoc1/local/cdo/include'
HDF5_LIBS=' -L/home/leoc1/local/cdo/lib -lhdf5'
HDF5_ROOT='/home/leoc1/local/cdo'
HOST_NAME='leoc1'
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=' -L/home/leoc1/local/cdo/lib -ljasper'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib -L/home/leoc1/local/cdo/lib'
LIBOBJS=''
LIBS='-lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/leoc1/local/cdo-1.5.9/config/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=' -I/home/leoc1/local/cdo/include'
NETCDF_LIBS=' -L/home/leoc1/local/cdo/lib -lnetcdf'
NETCDF_ROOT='/home/leoc1/local/cdo'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.5.9'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.5.9'
PATH_SEPARATOR=':'
PROJ_INCLUDE=' -I/home/leoc1/local/cdo/include'
PROJ_LDFLAGS=' -L/home/leoc1/local/cdo/lib -lproj'
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=' -I/home/leoc1/local/cdo/include'
SZLIB_LIBS=' -L/home/leoc1/local/cdo/lib -lsz'
THREADS_INCLUDE=' -I/home/leoc1/local/cdo/include'
THREADS_LIBS=' -L/home/leoc1/local/cdo/lib -lpthread'
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USER_NAME='leoc1'
VERSION='1.5.9'
XML2_LIBS=''
ZLIB_INCLUDE=' -I/home/leoc1/local/cdo/include'
ZLIB_LIBS=' -L/home/leoc1/local/cdo/lib -lz'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/leoc1/local/cdo-1.5.9/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/leoc1/local/cdo'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.5.9"
#define PACKAGE_STRING "cdo 1.5.9"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.5.9"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_MALLINFO 1
#define HAVE_DECL_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"
#define USER_NAME "leoc1"
#define HOST_NAME "leoc1"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_PTHREAD_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_LIBJASPER 1
#define HAVE_GRIB_API_H 1
#define HAVE_LIBGRIB_API 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define HAVE_PROJ_API_H 1
#define HAVE_LIBPROJ 1
#define COMPILER "gcc -std=gnu99 -DHAVE_LIBNC_DAP"

configure: exit 0
    (1-1/1)