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failure during make check ยป error_cdo_make_check.txt

make check output - Melina Dayan, 2013-05-23 08:48

 

admin:/usr/local/src/cdo-1.6.1rc4 # make check
Making check in libcdi
make[1]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi'
Making check in src
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/src'
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/src'
Making check in interfaces
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/interfaces'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/interfaces'
Making check in app
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/app'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/app'
Making check in examples
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/examples'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/examples'
Making check in examples/pio
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/examples/pio'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/examples/pio'
Making check in tests
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
make test_grib cksum_write cksum_read pio_write
make[3]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT test_grib.o -MD -MP -MF .deps/test_grib.Tpo -c -o test_grib.o test_grib.c
mv -f .deps/test_grib.Tpo .deps/test_grib.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -pthread -o test_grib test_grib.o ../src/libcdi.la -lm -lz -lm
libtool: link: gcc -std=gnu99 -g -O2 -pthread -o test_grib test_grib.o ../src/.libs/libcdi.a -lz -lm -pthread
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT cksum_write.o -MD -MP -MF .deps/cksum_write.Tpo -c -o cksum_write.o cksum_write.c
mv -f .deps/cksum_write.Tpo .deps/cksum_write.Po
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT cksum.o -MD -MP -MF .deps/cksum.Tpo -c -o cksum.o cksum.c
mv -f .deps/cksum.Tpo .deps/cksum.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -pthread -o cksum_write cksum_write.o cksum.o ../src/libcdi.la -lm -lz -lm
libtool: link: gcc -std=gnu99 -g -O2 -pthread -o cksum_write cksum_write.o cksum.o ../src/.libs/libcdi.a -lz -lm -pthread
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT cksum_read.o -MD -MP -MF .deps/cksum_read.Tpo -c -o cksum_read.o cksum_read.c
mv -f .deps/cksum_read.Tpo .deps/cksum_read.Po
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT var_cksum.o -MD -MP -MF .deps/var_cksum.Tpo -c -o var_cksum.o var_cksum.c
mv -f .deps/var_cksum.Tpo .deps/var_cksum.Po
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT stream_cksum.o -MD -MP -MF .deps/stream_cksum.Tpo -c -o stream_cksum.o stream_cksum.c
mv -f .deps/stream_cksum.Tpo .deps/stream_cksum.Po
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT ensure_array_size.o -MD -MP -MF .deps/ensure_array_size.Tpo -c -o ensure_array_size.o ensure_array_size.c
mv -f .deps/ensure_array_size.Tpo .deps/ensure_array_size.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -pthread -o cksum_read cksum_read.o var_cksum.o stream_cksum.o cksum.o ensure_array_size.o ../src/libcdi.la -lm -lz -lm
libtool: link: gcc -std=gnu99 -g -O2 -pthread -o cksum_read cksum_read.o var_cksum.o stream_cksum.o cksum.o ensure_array_size.o ../src/.libs/libcdi.a -lz -lm -pthread
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../src -I../src -g -O2 -pthread -MT pio_write.o -MD -MP -MF .deps/pio_write.Tpo -c -o pio_write.o pio_write.c
mv -f .deps/pio_write.Tpo .deps/pio_write.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -pthread -o pio_write pio_write.o cksum.o ../src/libcdi.la -lm -lz -lm
libtool: link: gcc -std=gnu99 -g -O2 -pthread -o pio_write pio_write.o cksum.o ../src/.libs/libcdi.a -lz -lm -pthread
make[3]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
make check-TESTS
make[3]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
PASS: test_grib.sh
PASS: test_cksum_grib
SKIP: test_cksum_nc
PASS: test_cksum_extra
PASS: test_cksum_service
SKIP: test_cksum_nc2
SKIP: test_cksum_nc4
PASS: test_cksum_ieg
PASS: pio_write_run
SKIP: pio_cksum_mpinonb
SKIP: pio_cksum_fpguard
SKIP: pio_cksum_asynch
SKIP: pio_cksum_writer
All 6 tests passed
(7 tests were not run)
======================
make[3]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi/tests'
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/libcdi'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi'
make[1]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/libcdi'
Making check in src
make[1]: Entering directory `/usr/local/src/cdo-1.6.1rc4/src'
make[1]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/src'
Making check in contrib
make[1]: Entering directory `/usr/local/src/cdo-1.6.1rc4/contrib'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/usr/local/src/cdo-1.6.1rc4/contrib'
Making check in test
make[1]: Entering directory `/usr/local/src/cdo-1.6.1rc4/test'
make check-TESTS
make[2]: Entering directory `/usr/local/src/cdo-1.6.1rc4/test'
E
======================================================================
ERROR: test_info (__main__.TestInfo)
----------------------------------------------------------------------
Traceback (most recent call last):
File "./../test/test_info.py", line 10, in test_info
cdo = Cdo()
File "/usr/local/src/cdo-1.6.1rc4/contrib/python/cdo.py", line 74, in __init__
self.libs = self.getSupportedLibs()
File "/usr/local/src/cdo-1.6.1rc4/contrib/python/cdo.py", line 217, in getSupportedLibs
withs = re.findall('with: (.*)',retvals[1])[0].split(' ')
IndexError: list index out of range

----------------------------------------------------------------------
Ran 1 test in 0.009s

FAILED (errors=1)
FAIL: ../test/test_info.py
=================================================
1 of 1 test failed
Please report to http://code.zmaw.de/projects/cdo
=================================================
    (1-1/1)