CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.6.1rc3, which was

generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-threads=/usr/local --with-zlib=/usr/local/ --with-szlib=/usr/local/ --with-hdf5=/usr/local/ --with-netcdf=/usr/local/ --with-jasper=/usr/local/ --with-grib_api=/usr/local/ --with-proj=/usr/local/ --with-udunits2=/usr/local/ --with-magics=/usr/local/ --with-libxml2=/usr/ LIBS=-lstdc++ CFLAGS=-fopenmp --prefix=/usr/local/

## --------- ##

## Platform. ##

## --------- ##

hostname = diogenis.hydromech.tuc.gr

uname -m = i686

uname -r = 2.6.32-279.22.1.el6.i686

uname -s = Linux

uname -v = #1 SMP Sun Jan 13 09:20:24 EST 2013

/usr/bin/uname -p = unknown

/bin/uname -X = unknown

/bin/arch = i686

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /usr/lib/qt-3.3/bin

PATH: /usr/local/bin

PATH: /bin

PATH: /usr/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2569: checking build system type

configure:2583: result: i686-pc-linux-gnu

configure:2603: checking host system type

configure:2616: result: i686-pc-linux-gnu

configure:2654: checking for a BSD-compatible install

configure:2722: result: /usr/bin/install -c

configure:2733: checking whether build environment is sane

configure:2783: result: yes

configure:2924: checking for a thread-safe mkdir -p

configure:2963: result: /bin/mkdir -p

configure:2976: checking for gawk

configure:2992: found /bin/gawk

configure:3003: result: gawk

configure:3014: checking whether make sets $(MAKE)

configure:3036: result: yes

configure:3119: checking whether to enable maintainer-specific portions of Makefiles

configure:3128: result: no

configure:3143: setting up libtool

configure:3191: checking how to print strings

configure:3218: result: printf

configure:3251: checking for style of include used by make

configure:3279: result: GNU

configure:3350: checking for gcc

configure:3366: found /usr/bin/gcc

configure:3377: result: gcc

configure:3606: checking for C compiler version

configure:3615: gcc --version >&5

gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)

Copyright (C) 2010 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3626: $? = 0

configure:3615: gcc -v >&5

Using built-in specs.

Target: i686-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux

Thread model: posix

gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC)

configure:3626: $? = 0

configure:3615: gcc -V >&5

gcc: '-V' option must have argument

configure:3626: $? = 1

configure:3615: gcc -qversion >&5

gcc: unrecognized option '-qversion'

gcc: no input files

configure:3626: $? = 1

configure:3646: checking whether the C compiler works

configure:3668: gcc -fopenmp conftest.c -lstdc++ >&5

configure:3672: $? = 0

configure:3720: result: yes

configure:3723: checking for C compiler default output file name

configure:3725: result: a.out

configure:3731: checking for suffix of executables

configure:3738: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:3742: $? = 0

configure:3764: result:

configure:3786: checking whether we are cross compiling

configure:3794: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:3798: $? = 0

configure:3805: ./conftest

configure:3809: $? = 0

configure:3824: result: no

configure:3829: checking for suffix of object files

configure:3851: gcc -c -fopenmp conftest.c >&5

configure:3855: $? = 0

configure:3876: result: o

configure:3880: checking whether we are using the GNU C compiler

configure:3899: gcc -c -fopenmp conftest.c >&5

configure:3899: $? = 0

configure:3908: result: yes

configure:3917: checking whether gcc accepts -g

configure:3937: gcc -c -g conftest.c >&5

configure:3937: $? = 0

configure:3978: result: yes

configure:3995: checking for gcc option to accept ISO C89

configure:4059: gcc -c -fopenmp conftest.c >&5

configure:4059: $? = 0

configure:4072: result: none needed

configure:4094: checking dependency style of gcc

configure:4205: result: gcc3

configure:4220: checking for a sed that does not truncate output

configure:4284: result: /bin/sed

configure:4302: checking for grep that handles long lines and -e

configure:4360: result: /bin/grep

configure:4365: checking for egrep

configure:4427: result: /bin/grep -E

configure:4432: checking for fgrep

configure:4494: result: /bin/grep -F

configure:4529: checking for ld used by gcc

configure:4596: result: /usr/bin/ld

configure:4603: checking if the linker (/usr/bin/ld) is GNU ld

configure:4618: result: yes

configure:4630: checking for BSD- or MS-compatible name lister (nm)

configure:4679: result: /usr/bin/nm -B

configure:4809: checking the name lister (/usr/bin/nm -B) interface

configure:4816: gcc -c -fopenmp conftest.c >&5

configure:4819: /usr/bin/nm -B "conftest.o"

configure:4822: output

00000000 B some_variable

configure:4829: result: BSD nm

configure:4832: checking whether ln -s works

configure:4836: result: yes

configure:4844: checking the maximum length of command line arguments

configure:4969: result: 1966080

configure:4986: checking whether the shell understands some XSI constructs

configure:4996: result: yes

configure:5000: checking whether the shell understands "+="

configure:5006: result: yes

configure:5041: checking for /usr/bin/ld option to reload object files

configure:5048: result: -r

configure:5117: checking for objdump

configure:5133: found /usr/bin/objdump

configure:5144: result: objdump

configure:5176: checking how to recognize dependent libraries

configure:5378: result: pass_all

configure:5438: checking for ar

configure:5454: found /usr/bin/ar

configure:5465: result: ar

configure:5543: checking for strip

configure:5559: found /usr/bin/strip

configure:5570: result: strip

configure:5642: checking for ranlib

configure:5658: found /usr/bin/ranlib

configure:5669: result: ranlib

configure:5771: checking command to parse /usr/bin/nm -B output from gcc object

configure:5889: gcc -c -fopenmp conftest.c >&5

configure:5892: $? = 0

configure:5896: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm

configure:5899: $? = 0

configure:5953: gcc -o conftest -fopenmp conftest.c conftstm.o >&5

configure:5956: $? = 0

configure:5994: result: ok

configure:6835: checking how to run the C preprocessor

configure:6866: gcc -E conftest.c

configure:6866: $? = 0

configure:6880: gcc -E conftest.c

conftest.c:11:28: error: ac_nonexistent.h: No such file or directory

configure:6880: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:6905: result: gcc -E

configure:6925: gcc -E conftest.c

configure:6925: $? = 0

configure:6939: gcc -E conftest.c

conftest.c:11:28: error: ac_nonexistent.h: No such file or directory

configure:6939: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:6968: checking for ANSI C header files

configure:6988: gcc -c -fopenmp conftest.c >&5

configure:6988: $? = 0

configure:7061: gcc -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:7061: $? = 0

configure:7061: ./conftest

configure:7061: $? = 0

configure:7072: result: yes

configure:7085: checking for sys/types.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for sys/stat.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for stdlib.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for string.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for memory.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for strings.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for inttypes.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for stdint.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7085: checking for unistd.h

configure:7085: gcc -c -fopenmp conftest.c >&5

configure:7085: $? = 0

configure:7085: result: yes

configure:7099: checking for dlfcn.h

configure:7099: gcc -c -fopenmp conftest.c >&5

configure:7099: $? = 0

configure:7099: result: yes

configure:7286: checking for objdir

configure:7301: result: .libs

configure:7572: checking if gcc supports -fno-rtti -fno-exceptions

configure:7590: gcc -c -fopenmp -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C

configure:7594: $? = 0

configure:7607: result: no

configure:7627: checking for gcc option to produce PIC

configure:7912: result: -fPIC -DPIC

configure:7924: checking if gcc PIC flag -fPIC -DPIC works

configure:7942: gcc -c -fopenmp -fPIC -DPIC -DPIC conftest.c >&5

configure:7946: $? = 0

configure:7959: result: yes

configure:7983: checking if gcc static flag -static works

configure:8011: result: no

configure:8026: checking if gcc supports -c -o file.o

configure:8047: gcc -c -fopenmp -o out/conftest2.o conftest.c >&5

configure:8051: $? = 0

configure:8073: result: yes

configure:8081: checking if gcc supports -c -o file.o

configure:8128: result: yes

configure:8161: checking whether the gcc linker (/usr/bin/ld) supports shared libraries

configure:9236: result: yes

configure:9273: checking whether -lc should be explicitly linked in

configure:9281: gcc -c -fopenmp conftest.c >&5

configure:9284: $? = 0

configure:9299: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1

configure:9302: $? = 0

configure:9316: result: no

configure:9481: checking dynamic linker characteristics

configure:9936: gcc -o conftest -fopenmp -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5

configure:9936: $? = 0

configure:10158: result: GNU/Linux ld.so

configure:10265: checking how to hardcode library paths into programs

configure:10290: result: immediate

configure:10830: checking whether stripping libraries is possible

configure:10835: result: yes

configure:10870: checking if libtool supports shared libraries

configure:10872: result: yes

configure:10875: checking whether to build shared libraries

configure:10896: result: yes

configure:10899: checking whether to build static libraries

configure:10903: result: yes

configure:10983: checking for gcc

configure:11010: result: gcc

configure:11032: checking for gcc option to accept ISO C99

configure:11181: gcc -c -fopenmp conftest.c >&5

conftest.c:73: error: expected ';', ',' or ')' before 'text'

conftest.c: In function 'main':

conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'

conftest.c:127: error: 'newvar' undeclared (first use in this function)

conftest.c:127: error: (Each undeclared identifier is reported only once

conftest.c:127: error: for each function it appears in.)

conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode

conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code

configure:11181: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <stdarg.h>

| #include <stdbool.h>

| #include <stdlib.h>

| #include <wchar.h>

| #include <stdio.h>

|

| // Check varargs macros. These examples are taken from C99 6.10.3.5.

| #define debug(...) fprintf (stderr, __VA_ARGS__)

| #define showlist(...) puts (#__VA_ARGS__)

| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))

| static void

| test_varargs_macros (void)

| {

| int x = 1234;

| int y = 5678;

| debug ("Flag");

| debug ("X = %d\n", x);

| showlist (The first, second, and third items.);

| report (x>y, "x is %d but y is %d", x, y);

| }

|

| // Check long long types.

| #define BIG64 18446744073709551615ull

| #define BIG32 4294967295ul

| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)

| #if !BIG_OK

| your preprocessor is broken;

| #endif

| #if BIG_OK

| #else

| your preprocessor is broken;

| #endif

| static long long int bignum = -9223372036854775807LL;

| static unsigned long long int ubignum = BIG64;

|

| struct incomplete_array

| {

| int datasize;

| double data[];

| };

|

| struct named_init {

| int number;

| const wchar_t *name;

| double average;

| };

|

| typedef const char *ccp;

|

| static inline int

| test_restrict (ccp restrict text)

| {

| // See if C++-style comments work.

| // Iterate through items via the restricted pointer.

| // Also check for declarations in for loops.

| for (unsigned int i = 0; *(text+i) != '\0'; ++i)

| continue;

| return 0;

| }

|

| // Check varargs and va_copy.

| static void

| test_varargs (const char *format, ...)

| {

| va_list args;

| va_start (args, format);

| va_list args_copy;

| va_copy (args_copy, args);

|

| const char *str;

| int number;

| float fnumber;

|

| while (*format)

| {

| switch (*format++)

| {

| case 's': // string

| str = va_arg (args_copy, const char *);

| break;

| case 'd': // int

| number = va_arg (args_copy, int);

| break;

| case 'f': // float

| fnumber = va_arg (args_copy, double);

| break;

| default:

| break;

| }

| }

| va_end (args_copy);

| va_end (args);

| }

|

| int

| main ()

| {

|

| // Check bool.

| _Bool success = false;

|

| // Check restrict.

| if (test_restrict ("String literal") == 0)

| success = true;

| char *restrict newvar = "Another string";

|

| // Check varargs.

| test_varargs ("s, d' f .", "string", 65, 34.234);

| test_varargs_macros ();

|

| // Check flexible array members.

| struct incomplete_array *ia =

| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));

| ia->datasize = 10;

| for (int i = 0; i < ia->datasize; ++i)

| ia->data[i] = i * 1.234;

|

| // Check named initializers.

| struct named_init ni = {

| .number = 34,

| .name = L"Test wide string",

| .average = 543.34343,

| };

|

| ni.number = 58;

|

| int dynamic_array[ni.number];

| dynamic_array[ni.number - 1] = 543;

|

| // work around unused variable warnings

| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'

| || dynamic_array[ni.number - 1] != 543);

|

| ;

| return 0;

| }

configure:11181: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:11181: $? = 0

configure:11201: result: -std=gnu99

configure:11210: checking whether gcc -std=gnu99 and cc understand -c and -o together

configure:11241: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5

configure:11245: $? = 0

configure:11251: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5

configure:11255: $? = 0

configure:11266: cc -c conftest.c >&5

configure:11270: $? = 0

configure:11278: cc -c conftest.c -o conftest2.o >&5

configure:11282: $? = 0

configure:11288: cc -c conftest.c -o conftest2.o >&5

configure:11292: $? = 0

configure:11310: result: yes

configure:11378: checking for ar

configure:11405: result: ar

configure:11562: checking for ld

configure:11589: result: /usr/bin/ld

configure:11654: checking for nm

configure:11681: result: /usr/bin/nm -B

configure:11746: checking for ar

configure:11773: result: ar

configure:11838: checking for as

configure:11854: found /usr/bin/as

configure:11865: result: as

configure:11930: checking for dlltool

configure:11960: result: no

configure:12022: checking for objdump

configure:12049: result: objdump

configure:12114: checking for strip

configure:12141: result: strip

configure:12206: checking for ranlib

configure:12233: result: ranlib

configure:12314: checking for g++

configure:12330: found /usr/bin/g++

configure:12341: result: g++

configure:12368: checking for C++ compiler version

configure:12377: g++ --version >&5

g++ (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)

Copyright (C) 2010 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12388: $? = 0

configure:12377: g++ -v >&5

Using built-in specs.

Target: i686-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux

Thread model: posix

gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC)

configure:12388: $? = 0

configure:12377: g++ -V >&5

g++: '-V' option must have argument

configure:12388: $? = 1

configure:12377: g++ -qversion >&5

g++: unrecognized option '-qversion'

g++: no input files

configure:12388: $? = 1

configure:12392: checking whether we are using the GNU C++ compiler

configure:12411: g++ -c conftest.cpp >&5

configure:12411: $? = 0

configure:12420: result: yes

configure:12429: checking whether g++ accepts -g

configure:12449: g++ -c -g conftest.cpp >&5

configure:12449: $? = 0

configure:12490: result: yes

configure:12515: checking dependency style of g++

configure:12626: result: gcc3

configure:12649: checking how to run the C++ preprocessor

configure:12676: g++ -E conftest.cpp

configure:12676: $? = 0

configure:12690: g++ -E conftest.cpp

conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory

configure:12690: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:12715: result: g++ -E

configure:12735: g++ -E conftest.cpp

configure:12735: $? = 0

configure:12749: g++ -E conftest.cpp

conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory

configure:12749: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:12917: checking for ld used by g++

configure:12984: result: /usr/bin/ld

configure:12991: checking if the linker (/usr/bin/ld) is GNU ld

configure:13006: result: yes

configure:13061: checking whether the g++ linker (/usr/bin/ld) supports shared libraries

configure:13993: result: yes

configure:14021: g++ -c -g -O2 conftest.cpp >&5

configure:14024: $? = 0

configure:14206: checking for g++ option to produce PIC

configure:14528: result: -fPIC -DPIC

configure:14537: checking if g++ PIC flag -fPIC -DPIC works

configure:14555: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:14559: $? = 0

configure:14572: result: yes

configure:14593: checking if g++ static flag -static works

configure:14621: result: no

configure:14633: checking if g++ supports -c -o file.o

configure:14654: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5

configure:14658: $? = 0

configure:14680: result: yes

configure:14685: checking if g++ supports -c -o file.o

configure:14732: result: yes

configure:14762: checking whether the g++ linker (/usr/bin/ld) supports shared libraries

configure:14790: result: yes

configure:14933: checking dynamic linker characteristics

configure:15544: result: GNU/Linux ld.so

configure:15597: checking how to hardcode library paths into programs

configure:15622: result: immediate

configure:15673: checking for special C compiler options needed for large files

configure:15718: result: no

configure:15724: checking for _FILE_OFFSET_BITS value needed for large files

configure:15749: gcc -std=gnu99 -c -fopenmp conftest.c >&5

conftest.c:29: warning: left shift count >= width of type

conftest.c:29: warning: left shift count >= width of type

conftest.c:31: error: size of array 'off_t_is_large' is negative

configure:15749: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <sys/types.h>

| /* Check that off_t can represent 2**63 - 1 correctly.

| We can't simply define LARGE_OFF_T to be 9223372036854775807,

| since some C++ compilers masquerading as C compilers

| incorrectly reject 9223372036854775807. */

| #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))

| int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721

| && LARGE_OFF_T % 2147483647 == 1)

| ? 1 : -1];

| int

| main ()

| {

|

| ;

| return 0;

| }

configure:15773: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:15773: $? = 0

configure:15781: result: 64

configure:15872: checking for stdlib.h

configure:15872: result: yes

configure:15872: checking for unistd.h

configure:15872: result: yes

configure:15872: checking for sys/param.h

configure:15872: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:15872: $? = 0

configure:15872: result: yes

configure:15892: checking for getpagesize

configure:15892: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:15892: $? = 0

configure:15892: result: yes

configure:15901: checking for working mmap

configure:16048: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:16048: $? = 0

configure:16048: ./conftest

configure:16048: $? = 0

configure:16058: result: yes

configure:16069: checking for malloc in -lmalloc

configure:16094: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lmalloc -lstdc++ >&5

conftest.c:36: warning: conflicting types for built-in function 'malloc'

/usr/bin/ld: cannot find -lmalloc

collect2: ld returned 1 exit status

configure:16094: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char malloc ();

| int

| main ()

| {

| return malloc ();

| ;

| return 0;

| }

configure:16103: result: no

configure:16116: checking for struct stat.st_blksize

configure:16116: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16116: $? = 0

configure:16116: result: yes

configure:16130: checking sys/resource.h usability

configure:16130: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16130: $? = 0

configure:16130: result: yes

configure:16130: checking sys/resource.h presence

configure:16130: gcc -E conftest.c

configure:16130: $? = 0

configure:16130: result: yes

configure:16130: checking for sys/resource.h

configure:16130: result: yes

configure:16142: checking sys/times.h usability

configure:16142: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16142: $? = 0

configure:16142: result: yes

configure:16142: checking sys/times.h presence

configure:16142: gcc -E conftest.c

configure:16142: $? = 0

configure:16142: result: yes

configure:16142: checking for sys/times.h

configure:16142: result: yes

configure:16154: checking malloc.h usability

configure:16154: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16154: $? = 0

configure:16154: result: yes

configure:16154: checking malloc.h presence

configure:16154: gcc -E conftest.c

configure:16154: $? = 0

configure:16154: result: yes

configure:16154: checking for malloc.h

configure:16154: result: yes

configure:16166: checking glob.h usability

configure:16166: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16166: $? = 0

configure:16166: result: yes

configure:16166: checking glob.h presence

configure:16166: gcc -E conftest.c

configure:16166: $? = 0

configure:16166: result: yes

configure:16166: checking for glob.h

configure:16166: result: yes

configure:16180: checking for mallinfo

configure:16180: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:16180: $? = 0

configure:16180: result: yes

configure:16191: checking whether isnan is declared

configure:16191: gcc -std=gnu99 -c -fopenmp conftest.c >&5

configure:16191: $? = 0

configure:16191: result: yes

configure:16206: checking for getrlimit

configure:16206: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:16206: $? = 0

configure:16206: result: yes

configure:16217: checking for gethostname

configure:16217: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lstdc++ >&5

configure:16217: $? = 0

configure:16217: result: yes

configure:16284: checking for floor in -lm

configure:16309: gcc -std=gnu99 -o conftest -fopenmp conftest.c -lm -lstdc++ >&5

conftest.c:49: warning: conflicting types for built-in function 'floor'

configure:16309: $? = 0

configure:16318: result: yes

configure:16331: checking for DATA support

configure:16348: result: yes

configure:16741: checking pthread.h usability

configure:16741: gcc -std=gnu99 -c -fopenmp -I/usr/local/include conftest.c >&5

configure:16741: $? = 0

configure:16741: result: yes

configure:16741: checking pthread.h presence

configure:16741: gcc -E -I/usr/local/include conftest.c

configure:16741: $? = 0

configure:16741: result: yes

configure:16741: checking for pthread.h

configure:16741: result: yes

configure:16751: checking for pthread_create in -lpthread

configure:16776: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5

configure:16776: $? = 0

configure:16785: result: yes

configure:16894: checking zlib.h usability

configure:16894: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local/include conftest.c >&5

configure:16894: $? = 0

configure:16894: result: yes

configure:16894: checking zlib.h presence

configure:16894: gcc -E -I/usr/local//include -I/usr/local/include conftest.c

configure:16894: $? = 0

configure:16894: result: yes

configure:16894: checking for zlib.h

configure:16894: result: yes

configure:16904: checking for library containing deflate

configure:16935: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lpthread -lm -lstdc++ >&5

/tmp/ccAn0MFE.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `deflate'

collect2: ld returned 1 exit status

configure:16935: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char deflate ();

| int

| main ()

| {

| return deflate ();

| ;

| return 0;

| }

configure:16935: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5

configure:16935: $? = 0

configure:16952: result: -lz

configure:17138: checking szlib.h usability

configure:17138: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5

configure:17138: $? = 0

configure:17138: result: yes

configure:17138: checking szlib.h presence

configure:17138: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c

configure:17138: $? = 0

configure:17138: result: yes

configure:17138: checking for szlib.h

configure:17138: result: yes

configure:17148: checking for library containing SZ_BufftoBuffCompress

configure:17179: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm -lstdc++ >&5

/tmp/ccTYhx7R.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `SZ_BufftoBuffCompress'

collect2: ld returned 1 exit status

configure:17179: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char SZ_BufftoBuffCompress ();

| int

| main ()

| {

| return SZ_BufftoBuffCompress ();

| ;

| return 0;

| }

configure:17179: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5

configure:17179: $? = 0

configure:17196: result: -lsz

configure:17386: checking hdf5.h usability

configure:17386: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5

configure:17386: $? = 0

configure:17386: result: yes

configure:17386: checking hdf5.h presence

configure:17386: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c

configure:17386: $? = 0

configure:17386: result: yes

configure:17386: checking for hdf5.h

configure:17386: result: yes

configure:17396: checking for library containing H5Fopen

configure:17427: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm -lstdc++ >&5

/tmp/ccg6D5x9.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `H5Fopen'

collect2: ld returned 1 exit status

configure:17427: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:17427: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

configure:17427: $? = 0

configure:17444: result: -lhdf5

configure:17456: checking for library containing H5DSis_scale

configure:17487: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

/tmp/ccNKOcQf.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `H5DSis_scale'

collect2: ld returned 1 exit status

configure:17487: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5DSis_scale ();

| int

| main ()

| {

| return H5DSis_scale ();

| ;

| return 0;

| }

configure:17487: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

configure:17487: $? = 0

configure:17504: result: -lhdf5_hl

configure:17705: checking netcdf.h usability

configure:17705: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5

configure:17705: $? = 0

configure:17705: result: yes

configure:17705: checking netcdf.h presence

configure:17705: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c

configure:17705: $? = 0

configure:17705: result: yes

configure:17705: checking for netcdf.h

configure:17705: result: yes

configure:17715: checking for library containing nc_open

configure:17746: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

/tmp/cc8l0Zwv.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `nc_open'

collect2: ld returned 1 exit status

configure:17746: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char nc_open ();

| int

| main ()

| {

| return nc_open ();

| ;

| return 0;

| }

configure:17746: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

configure:17746: $? = 0

configure:17763: result: -lnetcdf

configure:17778: checking nc-config script

configure:17782: checking for nc-config

configure:17798: found /usr/local//bin/nc-config

configure:17809: result: /usr/local//bin/nc-config

configure:17818: checking netcdf's OpenDAP support

configure:17827: result: no

configure:17830: checking netcdf's nc2 support

configure:17836: result: yes

configure:17842: checking netcdf's nc4 support

configure:17848: result: yes

configure:17967: checking for library containing jas_stream_memopen

configure:17998: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

/tmp/ccB06y3K.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `jas_stream_memopen'

collect2: ld returned 1 exit status

configure:17998: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| #define HAVE_NETCDF2 1

| #define HAVE_NETCDF4 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char jas_stream_memopen ();

| int

| main ()

| {

| return jas_stream_memopen ();

| ;

| return 0;

| }

configure:17998: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

configure:17998: $? = 0

configure:18015: result: -ljasper

configure:18135: checking grib_api.h usability

configure:18135: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5

configure:18135: $? = 0

configure:18135: result: yes

configure:18135: checking grib_api.h presence

configure:18135: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c

configure:18135: $? = 0

configure:18135: result: yes

configure:18135: checking for grib_api.h

configure:18135: result: yes

configure:18145: checking for library containing grib_get_message

configure:18176: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

/tmp/ccCYtaS4.o: In function `main':

conftest.c:(.text+0x7): undefined reference to `grib_get_message'

collect2: ld returned 1 exit status

configure:18176: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| #define HAVE_NETCDF2 1

| #define HAVE_NETCDF4 1

| #define HAVE_LIBJASPER 1

| #define HAVE_GRIB_API_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char grib_get_message ();

| int

| main ()

| {

| return grib_get_message ();

| ;

| return 0;

| }

configure:18176: gcc -std=gnu99 -o conftest -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm -lstdc++ >&5

configure:18176: $? = 0

configure:18193: result: -lgrib_api

configure:18224: checking for GRIB support

configure:18241: result: yes

configure:18247: checking for CGRIBEX support

configure:18264: result: yes

configure:18270: checking for SERVICE support

configure:18287: result: yes

configure:18293: checking for EXTRA support

configure:18310: result: yes

configure:18316: checking for IEG support

configure:18333: result: yes

configure:18339: checking for FFTW3 support

configure:18353: checking fftw3.h usability

configure:18353: gcc -std=gnu99 -c -fopenmp -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5

conftest.c:97:19: error: fftw3.h: No such file or directory

configure:18353: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_H 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| #define HAVE_NETCDF2 1

| #define HAVE_NETCDF4 1

| #define HAVE_LIBJASPER 1

| #define HAVE_GRIB_API_H 1

| #define HAVE_LIBGRIB_API 1

| #define HAVE_LIBGRIB 1

| #define HAVE_LIBCGRIBEX 1

| #define HAVE_LIBSERVICE 1

| #define HAVE_LIBEXTRA 1

| #define HAVE_LIBIEG 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| #include <fftw3.h>

configure:18353: result: no

configure:18353: checking fftw3.h presence

configure:18353: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c

conftest.c:64:19: error: fftw3.h: No such file or directory

configure:18353: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.6.1rc3"

| #define PACKAGE_STRING "cdo 1.6.1rc3"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.6.1rc3"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define _FILE_OFFSET_BITS 64

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"

| #define USER_NAME "kostas"

| #define HOST_NAME "diogenis.hydromech.tuc.gr"

| #define SYSTEM_TYPE "i686-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define ENABLE_DATA 1