CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.5.8, which was

generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --prefix=/usr --libdir=/usr/lib/x86_64-linux-gnu --enable-cdi-lib --with-zlib=/usr --with-netcdf=/usr --with-proj=/usr --with-hdf5=/usr --with-hdf5=/usr --with-proj=/usr --with-udunits2=/usr --with-grib-api=/usr --disable-cgribex --with-jasper=/usr

## --------- ##

## Platform. ##

## --------- ##

hostname = elara.iup.uni-bremen.de

uname -m = x86_64

uname -r = 3.2.0-32-generic

uname -s = Linux

uname -v = #51-Ubuntu SMP Wed Sep 26 21:33:09 UTC 2012

/usr/bin/uname -p = unknown

/bin/uname -X = unknown

/bin/arch = unknown

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /home2/hilboll/bin

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/sbin

PATH: /usr/bin

PATH: /sbin

PATH: /bin

PATH: /usr/games

PATH: /usr/lib/gmt/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2569: checking build system type

configure:2583: result: x86_64-unknown-linux-gnu

configure:2603: checking host system type

configure:2616: result: x86_64-unknown-linux-gnu

configure:2654: checking for a BSD-compatible install

configure:2722: result: /usr/bin/install -c

configure:2733: checking whether build environment is sane

configure:2783: result: yes

configure:2924: checking for a thread-safe mkdir -p

configure:2963: result: /bin/mkdir -p

configure:2976: checking for gawk

configure:2992: found /usr/bin/gawk

configure:3003: result: gawk

configure:3014: checking whether make sets $(MAKE)

configure:3036: result: yes

configure:3119: checking whether to enable maintainer-specific portions of Makefiles

configure:3128: result: no

configure:3143: setting up libtool

configure:3191: checking how to print strings

configure:3218: result: printf

configure:3251: checking for style of include used by make

configure:3279: result: GNU

configure:3350: checking for gcc

configure:3366: found /usr/bin/gcc

configure:3377: result: gcc

configure:3606: checking for C compiler version

configure:3615: gcc --version >&5

gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3

Copyright (C) 2011 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3626: $? = 0

configure:3615: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

configure:3626: $? = 0

configure:3615: gcc -V >&5

gcc: error: unrecognized option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:3626: $? = 4

configure:3615: gcc -qversion >&5

gcc: error: unrecognized option '-qversion'

gcc: fatal error: no input files

compilation terminated.

configure:3626: $? = 4

configure:3646: checking whether the C compiler works

configure:3668: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:3672: $? = 0

configure:3720: result: yes

configure:3723: checking for C compiler default output file name

configure:3725: result: a.out

configure:3731: checking for suffix of executables

configure:3738: gcc -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:3742: $? = 0

configure:3764: result:

configure:3786: checking whether we are cross compiling

configure:3794: gcc -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:3798: $? = 0

configure:3805: ./conftest

configure:3809: $? = 0

configure:3824: result: no

configure:3829: checking for suffix of object files

configure:3851: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:3855: $? = 0

configure:3876: result: o

configure:3880: checking whether we are using the GNU C compiler

configure:3899: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:3899: $? = 0

configure:3908: result: yes

configure:3917: checking whether gcc accepts -g

configure:3937: gcc -c -g -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:3937: $? = 0

configure:3978: result: yes

configure:3995: checking for gcc option to accept ISO C89

configure:4059: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:4059: $? = 0

configure:4072: result: none needed

configure:4094: checking dependency style of gcc

configure:4205: result: gcc3

configure:4220: checking for a sed that does not truncate output

configure:4284: result: /bin/sed

configure:4302: checking for grep that handles long lines and -e

configure:4360: result: /bin/grep

configure:4365: checking for egrep

configure:4427: result: /bin/grep -E

configure:4432: checking for fgrep

configure:4494: result: /bin/grep -F

configure:4529: checking for ld used by gcc

configure:4596: result: /usr/bin/ld

configure:4603: checking if the linker (/usr/bin/ld) is GNU ld

configure:4618: result: yes

configure:4630: checking for BSD- or MS-compatible name lister (nm)

configure:4679: result: /usr/bin/nm -B

configure:4809: checking the name lister (/usr/bin/nm -B) interface

configure:4816: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:4819: /usr/bin/nm -B "conftest.o"

configure:4822: output

0000000000000000 B some_variable

configure:4829: result: BSD nm

configure:4832: checking whether ln -s works

configure:4836: result: yes

configure:4844: checking the maximum length of command line arguments

configure:4974: result: 3458764513820540925

configure:4991: checking whether the shell understands some XSI constructs

configure:5001: result: yes

configure:5005: checking whether the shell understands "+="

configure:5011: result: yes

configure:5046: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format

configure:5086: result: func_convert_file_noop

configure:5093: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format

configure:5113: result: func_convert_file_noop

configure:5120: checking for /usr/bin/ld option to reload object files

configure:5127: result: -r

configure:5201: checking for objdump

configure:5217: found /usr/bin/objdump

configure:5228: result: objdump

configure:5260: checking how to recognize dependent libraries

configure:5462: result: pass_all

configure:5547: checking for dlltool

configure:5577: result: no

configure:5607: checking how to associate runtime and link libraries

configure:5634: result: printf %s\n

configure:5695: checking for ar

configure:5711: found /usr/bin/ar

configure:5722: result: ar

configure:5759: checking for archiver @FILE support

configure:5776: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:5776: $? = 0

configure:5779: ar cru libconftest.a @conftest.lst >&5

configure:5782: $? = 0

configure:5787: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:5790: $? = 1

configure:5802: result: @

configure:5860: checking for strip

configure:5876: found /usr/bin/strip

configure:5887: result: strip

configure:5959: checking for ranlib

configure:5975: found /usr/bin/ranlib

configure:5986: result: ranlib

configure:6088: checking command to parse /usr/bin/nm -B output from gcc object

configure:6208: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:6211: $? = 0

configure:6215: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6218: $? = 0

configure:6284: gcc -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c conftstm.o >&5

configure:6287: $? = 0

configure:6325: result: ok

configure:6362: checking for sysroot

configure:6392: result: no

configure:6469: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:6472: $? = 0

configure:6648: checking for mt

configure:6664: found /bin/mt

configure:6675: result: mt

configure:6698: checking if mt is a manifest tool

configure:6704: mt '-?'

configure:6712: result: no

configure:7354: checking how to run the C preprocessor

configure:7385: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

configure:7385: $? = 0

configure:7399: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:7399: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7424: result: gcc -E

configure:7444: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

configure:7444: $? = 0

configure:7458: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:7458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7487: checking for ANSI C header files

configure:7507: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7507: $? = 0

configure:7580: gcc -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:7580: $? = 0

configure:7580: ./conftest

configure:7580: $? = 0

configure:7591: result: yes

configure:7604: checking for sys/types.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for sys/stat.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for stdlib.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for string.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for memory.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for strings.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for inttypes.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for stdint.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7604: checking for unistd.h

configure:7604: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7604: $? = 0

configure:7604: result: yes

configure:7618: checking for dlfcn.h

configure:7618: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:7618: $? = 0

configure:7618: result: yes

configure:7824: checking for objdir

configure:7839: result: .libs

configure:8110: checking if gcc supports -fno-rtti -fno-exceptions

configure:8128: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]

configure:8132: $? = 0

configure:8145: result: no

configure:8472: checking for gcc option to produce PIC

configure:8479: result: -fPIC -DPIC

configure:8487: checking if gcc PIC flag -fPIC -DPIC works

configure:8505: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -fPIC -DPIC -DPIC conftest.c >&5

configure:8509: $? = 0

configure:8522: result: yes

configure:8551: checking if gcc static flag -static works

configure:8579: result: yes

configure:8594: checking if gcc supports -c -o file.o

configure:8615: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -o out/conftest2.o conftest.c >&5

configure:8619: $? = 0

configure:8641: result: yes

configure:8649: checking if gcc supports -c -o file.o

configure:8696: result: yes

configure:8729: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:9886: result: yes

configure:9923: checking whether -lc should be explicitly linked in

configure:9931: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:9934: $? = 0

configure:9949: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1

configure:9952: $? = 0

configure:9966: result: no

configure:10126: checking dynamic linker characteristics

configure:10637: gcc -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5

configure:10637: $? = 0

configure:10871: result: GNU/Linux ld.so

configure:10978: checking how to hardcode library paths into programs

configure:11003: result: immediate

configure:11543: checking whether stripping libraries is possible

configure:11548: result: yes

configure:11583: checking if libtool supports shared libraries

configure:11585: result: yes

configure:11588: checking whether to build shared libraries

configure:11609: result: yes

configure:11612: checking whether to build static libraries

configure:11616: result: yes

configure:11698: checking for gcc

configure:11725: result: gcc

configure:11747: checking for gcc option to accept ISO C99

configure:11896: gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

conftest.c:73:29: error: expected ';', ',' or ')' before 'text'

conftest.c: In function 'main':

conftest.c:127:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'

conftest.c:127:18: error: 'newvar' undeclared (first use in this function)

conftest.c:127:18: note: each undeclared identifier is reported only once for each function it appears in

conftest.c:137:3: error: 'for' loop initial declarations are only allowed in C99 mode

conftest.c:137:3: note: use option -std=c99 or -std=gnu99 to compile your code

configure:11896: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <stdarg.h>

| #include <stdbool.h>

| #include <stdlib.h>

| #include <wchar.h>

| #include <stdio.h>

|

| // Check varargs macros. These examples are taken from C99 6.10.3.5.

| #define debug(...) fprintf (stderr, __VA_ARGS__)

| #define showlist(...) puts (#__VA_ARGS__)

| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))

| static void

| test_varargs_macros (void)

| {

| int x = 1234;

| int y = 5678;

| debug ("Flag");

| debug ("X = %d\n", x);

| showlist (The first, second, and third items.);

| report (x>y, "x is %d but y is %d", x, y);

| }

|

| // Check long long types.

| #define BIG64 18446744073709551615ull

| #define BIG32 4294967295ul

| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)

| #if !BIG_OK

| your preprocessor is broken;

| #endif

| #if BIG_OK

| #else

| your preprocessor is broken;

| #endif

| static long long int bignum = -9223372036854775807LL;

| static unsigned long long int ubignum = BIG64;

|

| struct incomplete_array

| {

| int datasize;

| double data[];

| };

|

| struct named_init {

| int number;

| const wchar_t *name;

| double average;

| };

|

| typedef const char *ccp;

|

| static inline int

| test_restrict (ccp restrict text)

| {

| // See if C++-style comments work.

| // Iterate through items via the restricted pointer.

| // Also check for declarations in for loops.

| for (unsigned int i = 0; *(text+i) != '\0'; ++i)

| continue;

| return 0;

| }

|

| // Check varargs and va_copy.

| static void

| test_varargs (const char *format, ...)

| {

| va_list args;

| va_start (args, format);

| va_list args_copy;

| va_copy (args_copy, args);

|

| const char *str;

| int number;

| float fnumber;

|

| while (*format)

| {

| switch (*format++)

| {

| case 's': // string

| str = va_arg (args_copy, const char *);

| break;

| case 'd': // int

| number = va_arg (args_copy, int);

| break;

| case 'f': // float

| fnumber = va_arg (args_copy, double);

| break;

| default:

| break;

| }

| }

| va_end (args_copy);

| va_end (args);

| }

|

| int

| main ()

| {

|

| // Check bool.

| _Bool success = false;

|

| // Check restrict.

| if (test_restrict ("String literal") == 0)

| success = true;

| char *restrict newvar = "Another string";

|

| // Check varargs.

| test_varargs ("s, d' f .", "string", 65, 34.234);

| test_varargs_macros ();

|

| // Check flexible array members.

| struct incomplete_array *ia =

| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));

| ia->datasize = 10;

| for (int i = 0; i < ia->datasize; ++i)

| ia->data[i] = i * 1.234;

|

| // Check named initializers.

| struct named_init ni = {

| .number = 34,

| .name = L"Test wide string",

| .average = 543.34343,

| };

|

| ni.number = 58;

|

| int dynamic_array[ni.number];

| dynamic_array[ni.number - 1] = 543;

|

| // work around unused variable warnings

| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'

| || dynamic_array[ni.number - 1] != 543);

|

| ;

| return 0;

| }

configure:11896: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:11896: $? = 0

configure:11916: result: -std=gnu99

configure:11925: checking whether gcc -std=gnu99 and cc understand -c and -o together

configure:11956: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5

configure:11960: $? = 0

configure:11966: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5

configure:11970: $? = 0

configure:11981: cc -c conftest.c >&5

configure:11985: $? = 0

configure:11993: cc -c conftest.c -o conftest2.o >&5

configure:11997: $? = 0

configure:12003: cc -c conftest.c -o conftest2.o >&5

configure:12007: $? = 0

configure:12025: result: yes

configure:12094: checking for ar

configure:12121: result: ar

configure:12278: checking for ld

configure:12305: result: /usr/bin/ld -m elf_x86_64

configure:12370: checking for nm

configure:12397: result: /usr/bin/nm -B

configure:12462: checking for ar

configure:12489: result: ar

configure:12554: checking for as

configure:12570: found /usr/bin/as

configure:12581: result: as

configure:12646: checking for dlltool

configure:12673: result: false

configure:12738: checking for objdump

configure:12765: result: objdump

configure:12830: checking for strip

configure:12857: result: strip

configure:12922: checking for ranlib

configure:12949: result: ranlib

configure:13030: checking for g++

configure:13046: found /usr/bin/g++

configure:13057: result: g++

configure:13084: checking for C++ compiler version

configure:13093: g++ --version >&5

g++ (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3

Copyright (C) 2011 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13104: $? = 0

configure:13093: g++ -v >&5

Using built-in specs.

COLLECT_GCC=g++

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

configure:13104: $? = 0

configure:13093: g++ -V >&5

g++: error: unrecognized option '-V'

g++: fatal error: no input files

compilation terminated.

configure:13104: $? = 4

configure:13093: g++ -qversion >&5

g++: error: unrecognized option '-qversion'

g++: fatal error: no input files

compilation terminated.

configure:13104: $? = 4

configure:13108: checking whether we are using the GNU C++ compiler

configure:13127: g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 conftest.cpp >&5

configure:13127: $? = 0

configure:13136: result: yes

configure:13145: checking whether g++ accepts -g

configure:13165: g++ -c -g -D_FORTIFY_SOURCE=2 conftest.cpp >&5

configure:13165: $? = 0

configure:13206: result: yes

configure:13231: checking dependency style of g++

configure:13342: result: gcc3

configure:13375: checking how to run the C++ preprocessor

configure:13402: g++ -E -D_FORTIFY_SOURCE=2 conftest.cpp

configure:13402: $? = 0

configure:13416: g++ -E -D_FORTIFY_SOURCE=2 conftest.cpp

conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:13416: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13441: result: g++ -E

configure:13461: g++ -E -D_FORTIFY_SOURCE=2 conftest.cpp

configure:13461: $? = 0

configure:13475: g++ -E -D_FORTIFY_SOURCE=2 conftest.cpp

conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:13475: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13644: checking for ld used by g++

configure:13711: result: /usr/bin/ld -m elf_x86_64

configure:13718: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld

configure:13733: result: yes

configure:13788: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:14793: result: yes

configure:14829: g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 conftest.cpp >&5

configure:14832: $? = 0

configure:15352: checking for g++ option to produce PIC

configure:15359: result: -fPIC -DPIC

configure:15367: checking if g++ PIC flag -fPIC -DPIC works

configure:15385: g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:15389: $? = 0

configure:15402: result: yes

configure:15425: checking if g++ static flag -static works

configure:15453: result: yes

configure:15465: checking if g++ supports -c -o file.o

configure:15486: g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -o out/conftest2.o conftest.cpp >&5

configure:15490: $? = 0

configure:15512: result: yes

configure:15517: checking if g++ supports -c -o file.o

configure:15564: result: yes

configure:15594: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15633: result: yes

configure:15774: checking dynamic linker characteristics

configure:16453: result: GNU/Linux ld.so

configure:16506: checking how to hardcode library paths into programs

configure:16531: result: immediate

configure:16583: checking for special C compiler options needed for large files

configure:16628: result: no

configure:16634: checking for _FILE_OFFSET_BITS value needed for large files

configure:16659: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:16659: $? = 0

configure:16691: result: no

configure:16782: checking for stdlib.h

configure:16782: result: yes

configure:16782: checking for unistd.h

configure:16782: result: yes

configure:16782: checking for sys/param.h

configure:16782: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:16782: $? = 0

configure:16782: result: yes

configure:16802: checking for getpagesize

configure:16802: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:16802: $? = 0

configure:16802: result: yes

configure:16811: checking for working mmap

configure:16958: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:16958: $? = 0

configure:16958: ./conftest

configure:16958: $? = 0

configure:16968: result: yes

configure:16979: checking for malloc in -lmalloc

configure:17004: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lmalloc >&5

conftest.c:35:6: warning: conflicting types for built-in function 'malloc' [enabled by default]

/usr/bin/ld: cannot find -lmalloc

collect2: ld returned 1 exit status

configure:17004: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char malloc ();

| int

| main ()

| {

| return malloc ();

| ;

| return 0;

| }

configure:17013: result: no

configure:17026: checking for struct stat.st_blksize

configure:17026: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17026: $? = 0

configure:17026: result: yes

configure:17040: checking sys/resource.h usability

configure:17040: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17040: $? = 0

configure:17040: result: yes

configure:17040: checking sys/resource.h presence

configure:17040: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

configure:17040: $? = 0

configure:17040: result: yes

configure:17040: checking for sys/resource.h

configure:17040: result: yes

configure:17052: checking sys/times.h usability

configure:17052: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17052: $? = 0

configure:17052: result: yes

configure:17052: checking sys/times.h presence

configure:17052: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

configure:17052: $? = 0

configure:17052: result: yes

configure:17052: checking for sys/times.h

configure:17052: result: yes

configure:17064: checking malloc.h usability

configure:17064: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17064: $? = 0

configure:17064: result: yes

configure:17064: checking malloc.h presence

configure:17064: gcc -E -D_FORTIFY_SOURCE=2 conftest.c

configure:17064: $? = 0

configure:17064: result: yes

configure:17064: checking for malloc.h

configure:17064: result: yes

configure:17078: checking for mallinfo

configure:17078: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:17078: $? = 0

configure:17078: result: yes

configure:17089: checking whether isnan is declared

configure:17089: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17089: $? = 0

configure:17089: result: yes

configure:17104: checking for getrlimit

configure:17104: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:17104: $? = 0

configure:17104: result: yes

configure:17115: checking for gethostname

configure:17115: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c >&5

configure:17115: $? = 0

configure:17115: result: yes

configure:17182: checking for floor in -lm

configure:17207: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

conftest.c:47:6: warning: conflicting types for built-in function 'floor' [enabled by default]

configure:17207: $? = 0

configure:17216: result: yes

configure:17420: checking for the pthreads library -lpthreads

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lpthreads -lm >&5

/usr/bin/ld: cannot find -lpthreads

collect2: ld returned 1 exit status

configure:17458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void* a) {a=0;}

| static void* start_routine(void* a) {return a;}

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th,0,start_routine,0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0);

| ;

| return 0;

| }

configure:17467: result: no

configure:17365: checking whether pthreads work without any flags

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

/tmp/ccUPdWWi.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:48: undefined reference to `pthread_create'

/home2/hilboll/build/cdo/cdo/conftest.c:49: undefined reference to `pthread_join'

/home2/hilboll/build/cdo/cdo/conftest.c:51: undefined reference to `__pthread_register_cancel'

/home2/hilboll/build/cdo/cdo/conftest.c:52: undefined reference to `__pthread_unregister_cancel'

collect2: ld returned 1 exit status

configure:17458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void* a) {a=0;}

| static void* start_routine(void* a) {return a;}

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th,0,start_routine,0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0);

| ;

| return 0;

| }

configure:17467: result: no

configure:17370: checking whether pthreads work with -Kthread

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Kthread -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

gcc: error: unrecognized option '-Kthread'

configure:17458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void* a) {a=0;}

| static void* start_routine(void* a) {return a;}

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th,0,start_routine,0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0);

| ;

| return 0;

| }

configure:17467: result: no

configure:17370: checking whether pthreads work with -kthread

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -kthread -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

gcc: error: unrecognized option '-kthread'

configure:17458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void* a) {a=0;}

| static void* start_routine(void* a) {return a;}

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th,0,start_routine,0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0);

| ;

| return 0;

| }

configure:17467: result: no

configure:17420: checking for the pthreads library -llthread

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -llthread -lm >&5

/usr/bin/ld: cannot find -llthread

collect2: ld returned 1 exit status

configure:17458: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void* a) {a=0;}

| static void* start_routine(void* a) {return a;}

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th,0,start_routine,0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0);

| ;

| return 0;

| }

configure:17467: result: no

configure:17370: checking whether pthreads work with -pthread

configure:17458: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

configure:17458: $? = 0

configure:17467: result: yes

configure:17486: checking for joinable pthread attribute

configure:17501: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -D_FORTIFY_SOURCE=2 -Wl,--as-needed conftest.c -lm >&5

configure:17501: $? = 0

configure:17507: result: PTHREAD_CREATE_JOINABLE

configure:17517: checking if more special flags are required for pthreads

configure:17524: result: no

configure:17769: checking zlib.h usability

configure:17769: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:17769: $? = 0

configure:17769: result: yes

configure:17769: checking zlib.h presence

configure:17769: gcc -E -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c

configure:17769: $? = 0

configure:17769: result: yes

configure:17769: checking for zlib.h

configure:17769: result: yes

configure:17779: checking for library containing deflate

configure:17810: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -Wl,--as-needed conftest.c -lm >&5

/tmp/ccUfuqMJ.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:54: undefined reference to `deflate'

collect2: ld returned 1 exit status

configure:17810: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char deflate ();

| int

| main ()

| {

| return deflate ();

| ;

| return 0;

| }

configure:17810: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -Wl,--as-needed conftest.c -lz -lm >&5

configure:17810: $? = 0

configure:17827: result: -lz

configure:18093: checking for szlib library

configure:18095: result: suppressed

configure:18261: checking hdf5.h usability

configure:18261: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:18261: $? = 0

configure:18261: result: yes

configure:18261: checking hdf5.h presence

configure:18261: gcc -E -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c

configure:18261: $? = 0

configure:18261: result: yes

configure:18261: checking for hdf5.h

configure:18261: result: yes

configure:18271: checking for library containing H5Fopen

configure:18302: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lz -lm >&5

/tmp/ccUj6gMQ.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:56: undefined reference to `H5Fopen'

collect2: ld returned 1 exit status

configure:18302: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_HDF5_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:18302: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lhdf5 -lz -lm >&5

configure:18302: $? = 0

configure:18319: result: -lhdf5

configure:18331: checking for library containing H5DSis_scale

configure:18362: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lhdf5 -lz -lm >&5

/tmp/ccnHZfb3.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:57: undefined reference to `H5DSis_scale'

collect2: ld returned 1 exit status

configure:18362: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5DSis_scale ();

| int

| main ()

| {

| return H5DSis_scale ();

| ;

| return 0;

| }

configure:18362: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lhdf5_hl -lhdf5 -lz -lm >&5

configure:18362: $? = 0

configure:18379: result: -lhdf5_hl

configure:18580: checking netcdf.h usability

configure:18580: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c >&5

configure:18580: $? = 0

configure:18580: result: yes

configure:18580: checking netcdf.h presence

configure:18580: gcc -E -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 conftest.c

configure:18580: $? = 0

configure:18580: result: yes

configure:18580: checking for netcdf.h

configure:18580: result: yes

configure:18590: checking for library containing nc_open

configure:18621: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lhdf5_hl -lhdf5 -lz -lm >&5

/tmp/ccvAac3j.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:58: undefined reference to `nc_open'

collect2: ld returned 1 exit status

configure:18621: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char nc_open ();

| int

| main ()

| {

| return nc_open ();

| ;

| return 0;

| }

configure:18621: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,--as-needed conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm >&5

configure:18621: $? = 0

configure:18638: result: -lnetcdf

configure:18653: checking nc-config script

configure:18657: checking for nc-config

configure:18673: found /usr/bin/nc-config

configure:18684: result: /usr/bin/nc-config

configure:18693: checking netcdf's OpenDAP support

configure:18699: result: yes

configure:18705: checking netcdf's nc2 support

configure:18711: result: yes

configure:18717: checking netcdf's nc4 support

configure:18723: result: yes

configure:18842: checking for library containing jas_stream_memopen

configure:18873: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include -L/usr/lib -L/usr/lib -L/usr/lib -Wl,--as-needed -L/usr/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm >&5

/tmp/ccVQuegv.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:62: undefined reference to `jas_stream_memopen'

collect2: ld returned 1 exit status

configure:18873: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| #define HAVE_LIBNC_DAP 1

| #define HAVE_NETCDF2 1

| #define HAVE_NETCDF4 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char jas_stream_memopen ();

| int

| main ()

| {

| return jas_stream_memopen ();

| ;

| return 0;

| }

configure:18873: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include -L/usr/lib -L/usr/lib -L/usr/lib -Wl,--as-needed -L/usr/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lz -lm >&5

configure:18873: $? = 0

configure:18890: result: -ljasper

configure:19010: checking grib_api.h usability

configure:19010: gcc -std=gnu99 -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include conftest.c >&5

configure:19010: $? = 0

configure:19010: result: yes

configure:19010: checking grib_api.h presence

configure:19010: gcc -E -I/usr/include -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include conftest.c

configure:19010: $? = 0

configure:19010: result: yes

configure:19010: checking for grib_api.h

configure:19010: result: yes

configure:19020: checking for library containing grib_get_message

configure:19051: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -pthread -I/usr/include -I/usr/include -I/usr/include -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -Wl,--as-needed -L/usr/lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lz -lm >&5

/tmp/cc7ocO6M.o: In function `main':

/home2/hilboll/build/cdo/cdo/conftest.c:64: undefined reference to `grib_get_message'

collect2: ld returned 1 exit status

configure:19051: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.5.8"

| #define PACKAGE_STRING "cdo 1.5.8"

| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"

| #define PACKAGE_URL ""

| #define PACKAGE "cdo"

| #define VERSION "1.5.8"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3"

| #define USER_NAME "hilboll"

| #define HOST_NAME "elara.iup.uni-bremen.de"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_ZLIB_H 1

| #define HAVE_LIBZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| #define HAVE_LIBNC_DAP 1

| #define HAVE_NETCDF2 1