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cdo-1.5.4 installation error "cdo: error while loading ... ยป config.log

David Adams, 2012-04-17 07:10

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.5.4, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-netcdf=/netcdf-4.1.3

## --------- ##
## Platform. ##
## --------- ##

hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.3.0-8.fc16.x86_64
uname -s = Linux
uname -v = #1 SMP Thu Mar 29 18:37:19 UTC 2012

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/lib64/ccache
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /home/dadams/.local/bin
PATH: /home/dadams/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2500: checking build system type
configure:2514: result: x86_64-unknown-linux-gnu
configure:2534: checking host system type
configure:2547: result: x86_64-unknown-linux-gnu
configure:2585: checking for a BSD-compatible install
configure:2653: result: /usr/bin/install -c
configure:2664: checking whether build environment is sane
configure:2714: result: yes
configure:2855: checking for a thread-safe mkdir -p
configure:2894: result: /bin/mkdir -p
configure:2907: checking for gawk
configure:2923: found /usr/bin/gawk
configure:2934: result: gawk
configure:2945: checking whether make sets $(MAKE)
configure:2967: result: yes
configure:3050: checking whether to enable maintainer-specific portions of Makefiles
configure:3059: result: no
configure:3074: setting up libtool
configure:3122: checking how to print strings
configure:3149: result: printf
configure:3182: checking for style of include used by make
configure:3210: result: GNU
configure:3280: checking for gcc
configure:3296: found /usr/lib64/ccache/gcc
configure:3307: result: gcc
configure:3536: checking for C compiler version
configure:3545: gcc --version >&5
gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)
Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3556: $? = 0
configure:3545: gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.6.3/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.6.3 20120306 (Red Hat 4.6.3-2) (GCC)
configure:3556: $? = 0
configure:3545: gcc -V >&5
gcc: error: unrecognized option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3556: $? = 4
configure:3545: gcc -qversion >&5
gcc: error: unrecognized option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3556: $? = 4
configure:3576: checking whether the C compiler works
configure:3598: gcc conftest.c >&5
configure:3602: $? = 0
configure:3650: result: yes
configure:3653: checking for C compiler default output file name
configure:3655: result: a.out
configure:3661: checking for suffix of executables
configure:3668: gcc -o conftest conftest.c >&5
configure:3672: $? = 0
configure:3694: result:
configure:3716: checking whether we are cross compiling
configure:3724: gcc -o conftest conftest.c >&5
configure:3728: $? = 0
configure:3735: ./conftest
configure:3739: $? = 0
configure:3754: result: no
configure:3759: checking for suffix of object files
configure:3781: gcc -c conftest.c >&5
configure:3785: $? = 0
configure:3806: result: o
configure:3810: checking whether we are using the GNU C compiler
configure:3829: gcc -c conftest.c >&5
configure:3829: $? = 0
configure:3838: result: yes
configure:3847: checking whether gcc accepts -g
configure:3867: gcc -c -g conftest.c >&5
configure:3867: $? = 0
configure:3908: result: yes
configure:3925: checking for gcc option to accept ISO C89
configure:3989: gcc -c -g -O2 conftest.c >&5
configure:3989: $? = 0
configure:4002: result: none needed
configure:4024: checking dependency style of gcc
configure:4134: result: gcc3
configure:4149: checking for a sed that does not truncate output
configure:4213: result: /bin/sed
configure:4231: checking for grep that handles long lines and -e
configure:4289: result: /bin/grep
configure:4294: checking for egrep
configure:4356: result: /bin/grep -E
configure:4361: checking for fgrep
configure:4423: result: /bin/grep -F
configure:4458: checking for ld used by gcc
configure:4525: result: /usr/bin/ld
configure:4532: checking if the linker (/usr/bin/ld) is GNU ld
configure:4547: result: yes
configure:4559: checking for BSD- or MS-compatible name lister (nm)
configure:4608: result: /usr/bin/nm -B
configure:4738: checking the name lister (/usr/bin/nm -B) interface
configure:4745: gcc -c -g -O2 conftest.c >&5
configure:4748: /usr/bin/nm -B "conftest.o"
configure:4751: output
0000000000000000 B some_variable
configure:4758: result: BSD nm
configure:4761: checking whether ln -s works
configure:4765: result: yes
configure:4773: checking the maximum length of command line arguments
configure:4898: result: 1572864
configure:4915: checking whether the shell understands some XSI constructs
configure:4925: result: yes
configure:4929: checking whether the shell understands "+="
configure:4935: result: yes
configure:4970: checking for /usr/bin/ld option to reload object files
configure:4977: result: -r
configure:5046: checking for objdump
configure:5062: found /usr/bin/objdump
configure:5073: result: objdump
configure:5105: checking how to recognize dependent libraries
configure:5307: result: pass_all
configure:5367: checking for ar
configure:5383: found /usr/bin/ar
configure:5394: result: ar
configure:5472: checking for strip
configure:5488: found /usr/bin/strip
configure:5499: result: strip
configure:5571: checking for ranlib
configure:5587: found /usr/bin/ranlib
configure:5598: result: ranlib
configure:5700: checking command to parse /usr/bin/nm -B output from gcc object
configure:5818: gcc -c -g -O2 conftest.c >&5
configure:5821: $? = 0
configure:5825: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5828: $? = 0
configure:5882: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:5885: $? = 0
configure:5923: result: ok
configure:6019: gcc -c -g -O2 conftest.c >&5
configure:6022: $? = 0
configure:6764: checking how to run the C preprocessor
configure:6795: gcc -E conftest.c
configure:6795: $? = 0
configure:6809: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:6809: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6834: result: gcc -E
configure:6854: gcc -E conftest.c
configure:6854: $? = 0
configure:6868: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:6868: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6897: checking for ANSI C header files
configure:6917: gcc -c -g -O2 conftest.c >&5
configure:6917: $? = 0
configure:6990: gcc -o conftest -g -O2 conftest.c >&5
configure:6990: $? = 0
configure:6990: ./conftest
configure:6990: $? = 0
configure:7001: result: yes
configure:7014: checking for sys/types.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for sys/stat.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for stdlib.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for string.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for memory.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for strings.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for inttypes.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for stdint.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7014: checking for unistd.h
configure:7014: gcc -c -g -O2 conftest.c >&5
configure:7014: $? = 0
configure:7014: result: yes
configure:7028: checking for dlfcn.h
configure:7028: gcc -c -g -O2 conftest.c >&5
configure:7028: $? = 0
configure:7028: result: yes
configure:7215: checking for objdir
configure:7230: result: .libs
configure:7501: checking if gcc supports -fno-rtti -fno-exceptions
configure:7519: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:7523: $? = 0
configure:7536: result: no
configure:7556: checking for gcc option to produce PIC
configure:7841: result: -fPIC -DPIC
configure:7853: checking if gcc PIC flag -fPIC -DPIC works
configure:7871: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:7875: $? = 0
configure:7888: result: yes
configure:7912: checking if gcc static flag -static works
configure:7940: result: no
configure:7955: checking if gcc supports -c -o file.o
configure:7976: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:7980: $? = 0
configure:8002: result: yes
configure:8010: checking if gcc supports -c -o file.o
configure:8057: result: yes
configure:8090: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:9165: result: yes
configure:9202: checking whether -lc should be explicitly linked in
configure:9210: gcc -c -g -O2 conftest.c >&5
configure:9213: $? = 0
configure:9228: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:9231: $? = 0
configure:9245: result: no
configure:9410: checking dynamic linker characteristics
configure:9865: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:9865: $? = 0
configure:10087: result: GNU/Linux ld.so
configure:10194: checking how to hardcode library paths into programs
configure:10219: result: immediate
configure:10759: checking whether stripping libraries is possible
configure:10764: result: yes
configure:10799: checking if libtool supports shared libraries
configure:10801: result: yes
configure:10804: checking whether to build shared libraries
configure:10825: result: yes
configure:10828: checking whether to build static libraries
configure:10832: result: yes
configure:10911: checking for gcc
configure:10938: result: gcc
configure:10960: checking for gcc option to accept ISO C99
configure:11109: gcc -c -g -O2 conftest.c >&5
conftest.c:73:29: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:127:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:127:18: error: 'newvar' undeclared (first use in this function)
conftest.c:127:18: note: each undeclared identifier is reported only once for each function it appears in
conftest.c:137:3: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:137:3: note: use option -std=c99 or -std=gnu99 to compile your code
configure:11109: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:11109: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:11109: $? = 0
configure:11129: result: -std=gnu99
configure:11138: checking whether gcc -std=gnu99 and cc understand -c and -o together
configure:11169: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11173: $? = 0
configure:11179: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11183: $? = 0
configure:11194: cc -c conftest.c >&5
configure:11198: $? = 0
configure:11206: cc -c conftest.c -o conftest2.o >&5
configure:11210: $? = 0
configure:11216: cc -c conftest.c -o conftest2.o >&5
configure:11220: $? = 0
configure:11238: result: yes
configure:11307: checking for ar
configure:11334: result: ar
configure:11491: checking for ld
configure:11518: result: /usr/bin/ld -m elf_x86_64
configure:11583: checking for nm
configure:11610: result: /usr/bin/nm -B
configure:11675: checking for ar
configure:11702: result: ar
configure:11767: checking for as
configure:11783: found /usr/bin/as
configure:11794: result: as
configure:11859: checking for dlltool
configure:11889: result: no
configure:11951: checking for objdump
configure:11978: result: objdump
configure:12043: checking for strip
configure:12070: result: strip
configure:12135: checking for ranlib
configure:12162: result: ranlib
configure:12243: checking for g++
configure:12259: found /usr/lib64/ccache/g++
configure:12270: result: g++
configure:12297: checking for C++ compiler version
configure:12306: g++ --version >&5
g++ (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)
Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12317: $? = 0
configure:12306: g++ -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/g++
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.6.3/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.6.3 20120306 (Red Hat 4.6.3-2) (GCC)
configure:12317: $? = 0
configure:12306: g++ -V >&5
g++: error: unrecognized option '-V'
g++: fatal error: no input files
compilation terminated.
configure:12317: $? = 4
configure:12306: g++ -qversion >&5
g++: error: unrecognized option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:12317: $? = 4
configure:12321: checking whether we are using the GNU C++ compiler
configure:12340: g++ -c conftest.cpp >&5
configure:12340: $? = 0
configure:12349: result: yes
configure:12358: checking whether g++ accepts -g
configure:12378: g++ -c -g conftest.cpp >&5
configure:12378: $? = 0
configure:12419: result: yes
configure:12444: checking dependency style of g++
configure:12554: result: gcc3
configure:12577: checking how to run the C++ preprocessor
configure:12604: g++ -E conftest.cpp
configure:12604: $? = 0
configure:12618: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:12618: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12643: result: g++ -E
configure:12663: g++ -E conftest.cpp
configure:12663: $? = 0
configure:12677: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:12677: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12845: checking for ld used by g++
configure:12912: result: /usr/bin/ld -m elf_x86_64
configure:12919: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:12934: result: yes
configure:12989: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:13921: result: yes
configure:13949: g++ -c -g -O2 conftest.cpp >&5
configure:13952: $? = 0
configure:14134: checking for g++ option to produce PIC
configure:14456: result: -fPIC -DPIC
configure:14465: checking if g++ PIC flag -fPIC -DPIC works
configure:14483: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14487: $? = 0
configure:14500: result: yes
configure:14521: checking if g++ static flag -static works
configure:14549: result: no
configure:14561: checking if g++ supports -c -o file.o
configure:14582: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:14586: $? = 0
configure:14608: result: yes
configure:14613: checking if g++ supports -c -o file.o
configure:14660: result: yes
configure:14690: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14718: result: yes
configure:14861: checking dynamic linker characteristics
configure:15472: result: GNU/Linux ld.so
configure:15525: checking how to hardcode library paths into programs
configure:15550: result: immediate
configure:15601: checking for special C compiler options needed for large files
configure:15646: result: no
configure:15652: checking for _FILE_OFFSET_BITS value needed for large files
configure:15677: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15677: $? = 0
configure:15709: result: no
configure:15800: checking for stdlib.h
configure:15800: result: yes
configure:15800: checking for unistd.h
configure:15800: result: yes
configure:15800: checking for sys/param.h
configure:15800: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15800: $? = 0
configure:15800: result: yes
configure:15820: checking for getpagesize
configure:15820: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:15820: $? = 0
configure:15820: result: yes
configure:15829: checking for working mmap
configure:15976: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:15976: $? = 0
configure:15976: ./conftest
configure:15976: $? = 0
configure:15986: result: yes
configure:15997: checking for malloc in -lmalloc
configure:16022: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5
conftest.c:35:6: warning: conflicting types for built-in function 'malloc' [enabled by default]
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:16022: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:16031: result: no
configure:16044: checking for struct stat.st_blksize
configure:16044: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16044: $? = 0
configure:16044: result: yes
configure:16058: checking sys/resource.h usability
configure:16058: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16058: $? = 0
configure:16058: result: yes
configure:16058: checking sys/resource.h presence
configure:16058: gcc -E conftest.c
configure:16058: $? = 0
configure:16058: result: yes
configure:16058: checking for sys/resource.h
configure:16058: result: yes
configure:16070: checking sys/times.h usability
configure:16070: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16070: $? = 0
configure:16070: result: yes
configure:16070: checking sys/times.h presence
configure:16070: gcc -E conftest.c
configure:16070: $? = 0
configure:16070: result: yes
configure:16070: checking for sys/times.h
configure:16070: result: yes
configure:16082: checking malloc.h usability
configure:16082: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16082: $? = 0
configure:16082: result: yes
configure:16082: checking malloc.h presence
configure:16082: gcc -E conftest.c
configure:16082: $? = 0
configure:16082: result: yes
configure:16082: checking for malloc.h
configure:16082: result: yes
configure:16096: checking for mallinfo
configure:16096: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16096: $? = 0
configure:16096: result: yes
configure:16109: checking for isnan
configure:16109: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
conftest.c:56:6: warning: conflicting types for built-in function 'isnan' [enabled by default]
configure:16109: $? = 0
configure:16109: result: yes
configure:16120: checking for getrlimit
configure:16120: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16120: $? = 0
configure:16120: result: yes
configure:16131: checking for gethostname
configure:16131: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16131: $? = 0
configure:16131: result: yes
configure:16197: checking for floor in -lm
configure:16222: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5
conftest.c:47:6: warning: conflicting types for built-in function 'floor' [enabled by default]
configure:16222: $? = 0
configure:16231: result: yes
configure:16435: checking for the pthreads library -lpthreads
configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthreads -lm >&5
/usr/bin/ld: cannot find -lpthreads
collect2: ld returned 1 exit status
configure:16473: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16482: result: no
configure:16380: checking whether pthreads work without any flags
configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5
/tmp/cc2XNEYu.o: In function `main':
/usr/local/cdo-1.5.4/conftest.c:48: undefined reference to `pthread_create'
/usr/local/cdo-1.5.4/conftest.c:49: undefined reference to `pthread_join'
/usr/local/cdo-1.5.4/conftest.c:51: undefined reference to `__pthread_register_cancel'
/usr/local/cdo-1.5.4/conftest.c:52: undefined reference to `__pthread_unregister_cancel'
collect2: ld returned 1 exit status
configure:16473: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16482: result: no
configure:16385: checking whether pthreads work with -Kthread
configure:16473: gcc -std=gnu99 -o conftest -g -O2 -Kthread conftest.c -lm >&5
gcc: error: unrecognized option '-Kthread'
configure:16473: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16482: result: no
configure:16385: checking whether pthreads work with -kthread
configure:16473: gcc -std=gnu99 -o conftest -g -O2 -kthread conftest.c -lm >&5
gcc: error: unrecognized option '-kthread'
configure:16473: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16482: result: no
configure:16435: checking for the pthreads library -llthread
configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -llthread -lm >&5
/usr/bin/ld: cannot find -llthread
collect2: ld returned 1 exit status
configure:16473: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void* a) {a=0;}
| static void* start_routine(void* a) {return a;}
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th,0,start_routine,0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0);
| ;
| return 0;
| }
configure:16482: result: no
configure:16385: checking whether pthreads work with -pthread
configure:16473: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5
configure:16473: $? = 0
configure:16482: result: yes
configure:16501: checking for joinable pthread attribute
configure:16516: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5
configure:16516: $? = 0
configure:16522: result: PTHREAD_CREATE_JOINABLE
configure:16532: checking if more special flags are required for pthreads
configure:16539: result: no
configure:16860: checking zlib.h usability
configure:16860: gcc -std=gnu99 -c -g -O2 -pthread conftest.c >&5
configure:16860: $? = 0
configure:16860: result: yes
configure:16860: checking zlib.h presence
configure:16860: gcc -E conftest.c
configure:16860: $? = 0
configure:16860: result: yes
configure:16860: checking for zlib.h
configure:16860: result: yes
configure:16870: checking for library containing deflate
configure:16901: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5
/tmp/ccpWEvCK.o: In function `main':
/usr/local/cdo-1.5.4/conftest.c:54: undefined reference to `deflate'
collect2: ld returned 1 exit status
configure:16901: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:16901: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lz -lm >&5
configure:16901: $? = 0
configure:16918: result: -lz
configure:17108: checking for szlib library
configure:17110: result: suppressed
configure:17426: checking for hdf5 library
configure:17428: result: suppressed
configure:17595: checking netcdf.h usability
configure:17595: gcc -std=gnu99 -c -g -O2 -pthread -I/netcdf-4.1.3/include conftest.c >&5
configure:17595: $? = 0
configure:17595: result: yes
configure:17595: checking netcdf.h presence
configure:17595: gcc -E -I/netcdf-4.1.3/include conftest.c
configure:17595: $? = 0
configure:17595: result: yes
configure:17595: checking for netcdf.h
configure:17595: result: yes
configure:17605: checking for library containing nc_open
configure:17636: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/netcdf-4.1.3/include -L/netcdf-4.1.3/lib conftest.c -lz -lm >&5
/tmp/ccFXTIlQ.o: In function `main':
/usr/local/cdo-1.5.4/conftest.c:56: undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:17636: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.5.4"
| #define PACKAGE_STRING "cdo 1.5.4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.5.4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
| #define USER_NAME "dadams"
| #define HOST_NAME "localhost.localdomain"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:17636: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/netcdf-4.1.3/include -L/netcdf-4.1.3/lib conftest.c -lnetcdf -lz -lm >&5
configure:17636: $? = 0
configure:17653: result: -lnetcdf
configure:17668: checking nc-config script
configure:17672: checking for nc-config
configure:17702: result: no
configure:17745: result: Could not find nc-config! go on with default configuration
configure:17925: checking for the JASPER library
configure:17927: result: suppressed
configure:18104: checking for the GRIB_API library
configure:18106: result: suppressed
configure:18114: checking for GRIB support
configure:18131: result: yes
configure:18137: checking for CGRIBEX support
configure:18154: result: yes
configure:18160: checking for SERVICE support
configure:18177: result: yes
configure:18183: checking for EXTRA support
configure:18200: result: yes
configure:18206: checking for IEG support
configure:18223: result: yes
configure:18403: checking for the PROJ library
configure:18405: result: suppressed
configure:18416: checking for build a separate CDI library and link CDO to it
configure:18433: result: no
configure:18457: checking for building an additional static CDO binary
configure:18470: result: no
configure:18645: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by cdo config.status 1.5.4, which was
generated by GNU Autoconf 2.68. Invocation command line was

CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status

on localhost.localdomain

config.status:1216: creating Makefile
config.status:1216: creating src/Makefile
config.status:1216: creating contrib/Makefile
config.status:1216: creating cdo.spec
config.status:1216: creating cdo.settings
config.status:1216: creating src/config.h
config.status:1397: src/config.h is unchanged
config.status:1445: executing depfiles commands
config.status:1445: executing libtool commands
configure:21217: === configuring in libcdi (/usr/local/cdo-1.5.4/libcdi)
configure:21280: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-netcdf=/netcdf-4.1.3' --cache-file=/dev/null --srcdir=.
configure:21299: CDO is configured with the following options:
configure:21318:

Configuration completed.

You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_isnan=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_deflate=-lz
ac_cv_search_nc_open=-lnetcdf
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /usr/local/cdo-1.5.4/config/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /usr/local/cdo-1.5.4/config/missing --run tar'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /usr/local/cdo-1.5.4/config/missing --run autoconf'
AUTOHEADER='${SHELL} /usr/local/cdo-1.5.4/config/missing --run autoheader'
AUTOMAKE='${SHELL} /usr/local/cdo-1.5.4/config/missing --run automake-1.11'
AWK='gawk'
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -pthread'
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS='-I/netcdf-4.1.3/include '
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL=':'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE='#'
ENABLE_CDI_LIB='false'
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE='#'
ENABLE_CGRIBEX='yes'
ENABLE_EXTRA='yes'
ENABLE_GRIB='yes'
ENABLE_IEG='yes'
ENABLE_SERVICE='yes'
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT=''
HOST_NAME='localhost.localdomain'
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=''
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/netcdf-4.1.3/lib '
LIBOBJS=''
LIBS='-lnetcdf -lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /usr/local/cdo-1.5.4/config/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=' -I/netcdf-4.1.3/include'
NETCDF_LIBS=' -L/netcdf-4.1.3/lib -lnetcdf'
NETCDF_ROOT='/netcdf-4.1.3'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.5.4'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.5.4'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc -std=gnu99'
PTHREAD_CFLAGS='-pthread'
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
USER_NAME='dadams'
VERSION='1.5.4'
ZLIB_INCLUDE=''
ZLIB_LIBS=' -lz'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /usr/local/cdo-1.5.4/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libcdi'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.5.4"
#define PACKAGE_STRING "cdo 1.5.4"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.5.4"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_MALLINFO 1
#define HAVE_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2)"
#define USER_NAME "dadams"
#define HOST_NAME "localhost.localdomain"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define COMPILER "gcc -std=gnu99 -g -O2 -pthread"

configure: exit 0
    (1-1/1)