CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.7.1, which was

generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --enable-netcdf4 --enable-zlib --with-netcdf=/usr/ --with-hdf5=/usr/

## --------- ##

## Platform. ##

## --------- ##

hostname = DESKTOP-VQ1E2QL

uname -m = x86_64

uname -r = 4.4.0-18362-Microsoft

uname -s = Linux

uname -v = #1-Microsoft Mon Mar 18 12:02:00 PST 2019

/usr/bin/uname -p = unknown

/bin/uname -X = unknown

/bin/arch = unknown

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/sbin

PATH: /usr/bin

PATH: /sbin

PATH: /bin

PATH: /snap/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2879: checking build system type

configure:2893: result: x86_64-pc-linux-gnu

configure:2913: checking host system type

configure:2926: result: x86_64-pc-linux-gnu

configure:2965: checking for a BSD-compatible install

configure:3033: result: /usr/bin/install -c

configure:3044: checking whether build environment is sane

configure:3099: result: yes

configure:3250: checking for a thread-safe mkdir -p

configure:3289: result: /bin/mkdir -p

configure:3296: checking for gawk

configure:3312: found /usr/bin/gawk

configure:3323: result: gawk

configure:3334: checking whether make sets $(MAKE)

configure:3356: result: yes

configure:3385: checking whether make supports nested variables

configure:3402: result: yes

configure:3531: checking whether to enable maintainer-specific portions of Makefiles

configure:3540: result: no

configure:3559: checking whether make supports the include directive

configure:3574: make -f confmf.GNU && cat confinc.out

this is the am__doit target

configure:3577: $? = 0

configure:3596: result: yes (GNU style)

configure:3666: checking for gcc

configure:3682: found /usr/bin/gcc

configure:3693: result: gcc

configure:3922: checking for C compiler version

configure:3931: gcc --version >&5

gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3942: $? = 0

configure:3931: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper

OFFLOAD_TARGET_NAMES=nvptx-none

OFFLOAD_TARGET_DEFAULT=1

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)

configure:3942: $? = 0

configure:3931: gcc -V >&5

gcc: error: unrecognized command line option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 1

configure:3931: gcc -qversion >&5

gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 1

configure:3962: checking whether the C compiler works

configure:3984: gcc conftest.c >&5

configure:3988: $? = 0

configure:4036: result: yes

configure:4039: checking for C compiler default output file name

configure:4041: result: a.out

configure:4047: checking for suffix of executables

configure:4054: gcc -o conftest conftest.c >&5

configure:4058: $? = 0

configure:4080: result:

configure:4102: checking whether we are cross compiling

configure:4110: gcc -o conftest conftest.c >&5

configure:4114: $? = 0

configure:4121: ./conftest

configure:4125: $? = 0

configure:4140: result: no

configure:4145: checking for suffix of object files

configure:4167: gcc -c conftest.c >&5

configure:4171: $? = 0

configure:4192: result: o

configure:4196: checking whether we are using the GNU C compiler

configure:4215: gcc -c conftest.c >&5

configure:4215: $? = 0

configure:4224: result: yes

configure:4233: checking whether gcc accepts -g

configure:4253: gcc -c -g conftest.c >&5

configure:4253: $? = 0

configure:4294: result: yes

configure:4311: checking for gcc option to accept ISO C89

configure:4374: gcc -c -g -O2 conftest.c >&5

configure:4374: $? = 0

configure:4387: result: none needed

configure:4412: checking whether gcc understands -c and -o together

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4449: result: yes

configure:4468: checking dependency style of gcc

configure:4579: result: gcc3

configure:4644: checking for ar

configure:4660: found /usr/bin/ar

configure:4671: result: ar

configure:4697: checking the archiver (ar) interface

configure:4713: gcc -c -g -O2 conftest.c >&5

configure:4713: $? = 0

configure:4715: ar cru libconftest.a conftest.o >&5

ar: `u' modifier ignored since `D' is the default (see `U')

configure:4718: $? = 0

configure:4746: result: ar

configure:4767: setting up libtool

configure:4815: checking how to print strings

configure:4842: result: printf

configure:4863: checking for a sed that does not truncate output

configure:4927: result: /bin/sed

configure:4945: checking for grep that handles long lines and -e

configure:5003: result: /bin/grep

configure:5008: checking for egrep

configure:5070: result: /bin/grep -E

configure:5075: checking for fgrep

configure:5137: result: /bin/grep -F

configure:5172: checking for ld used by gcc

configure:5239: result: /usr/bin/ld

configure:5246: checking if the linker (/usr/bin/ld) is GNU ld

configure:5261: result: yes

configure:5273: checking for BSD- or MS-compatible name lister (nm)

configure:5327: result: /usr/bin/nm -B

configure:5457: checking the name lister (/usr/bin/nm -B) interface

configure:5464: gcc -c -g -O2 conftest.c >&5

configure:5467: /usr/bin/nm -B "conftest.o"

configure:5470: output

0000000000000000 B some_variable

configure:5477: result: BSD nm

configure:5480: checking whether ln -s works

configure:5484: result: yes

configure:5492: checking the maximum length of command line arguments

configure:5623: result: 1572864

configure:5671: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format

configure:5711: result: func_convert_file_noop

configure:5718: checking how to convert x86_64-pc-linux-gnu file names to toolchain format

configure:5738: result: func_convert_file_noop

configure:5745: checking for /usr/bin/ld option to reload object files

configure:5752: result: -r

configure:5826: checking for objdump

configure:5842: found /usr/bin/objdump

configure:5853: result: objdump

configure:5885: checking how to recognize dependent libraries

configure:6085: result: pass_all

configure:6170: checking for dlltool

configure:6200: result: no

configure:6230: checking how to associate runtime and link libraries

configure:6257: result: printf %s\n

configure:6381: checking for archiver @FILE support

configure:6398: gcc -c -g -O2 conftest.c >&5

configure:6398: $? = 0

configure:6401: ar cru libconftest.a @conftest.lst >&5

ar: `u' modifier ignored since `D' is the default (see `U')

configure:6404: $? = 0

configure:6409: ar cru libconftest.a @conftest.lst >&5

ar: `u' modifier ignored since `D' is the default (see `U')

ar: conftest.o: No such file or directory

configure:6412: $? = 1

configure:6424: result: @

configure:6482: checking for strip

configure:6498: found /usr/bin/strip

configure:6509: result: strip

configure:6581: checking for ranlib

configure:6597: found /usr/bin/ranlib

configure:6608: result: ranlib

configure:6710: checking command to parse /usr/bin/nm -B output from gcc object

configure:6863: gcc -c -g -O2 conftest.c >&5

configure:6866: $? = 0

configure:6870: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6873: $? = 0

configure:6939: gcc -o conftest -g -O2 conftest.c conftstm.o >&5

configure:6942: $? = 0

configure:6980: result: ok

configure:7027: checking for sysroot

configure:7057: result: no

configure:7064: checking for a working dd

configure:7102: result: /bin/dd

configure:7106: checking how to truncate binary pipes

configure:7121: result: /bin/dd bs=4096 count=1

configure:7257: gcc -c -g -O2 conftest.c >&5

configure:7260: $? = 0

configure:7450: checking for mt

configure:7466: found /bin/mt

configure:7477: result: mt

configure:7500: checking if mt is a manifest tool

configure:7506: mt '-?'

configure:7514: result: no

configure:8191: checking how to run the C preprocessor

configure:8222: gcc -E conftest.c

configure:8222: $? = 0

configure:8236: gcc -E conftest.c

conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^~~~~~~~~~~~~~~~~~

compilation terminated.

configure:8236: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8261: result: gcc -E

configure:8281: gcc -E conftest.c

configure:8281: $? = 0

configure:8295: gcc -E conftest.c

conftest.c:12:10: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^~~~~~~~~~~~~~~~~~

compilation terminated.

configure:8295: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8324: checking for ANSI C header files

configure:8344: gcc -c -g -O2 conftest.c >&5

configure:8344: $? = 0

configure:8417: gcc -o conftest -g -O2 conftest.c >&5

configure:8417: $? = 0

configure:8417: ./conftest

configure:8417: $? = 0

configure:8428: result: yes

configure:8441: checking for sys/types.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for sys/stat.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdlib.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for string.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for memory.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for strings.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for inttypes.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdint.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for unistd.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8455: checking for dlfcn.h

configure:8455: gcc -c -g -O2 conftest.c >&5

configure:8455: $? = 0

configure:8455: result: yes

configure:8711: checking for objdir

configure:8726: result: .libs

configure:8990: checking if gcc supports -fno-rtti -fno-exceptions

configure:9008: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C

configure:9012: $? = 0

configure:9025: result: no

configure:9383: checking for gcc option to produce PIC

configure:9390: result: -fPIC -DPIC

configure:9398: checking if gcc PIC flag -fPIC -DPIC works

configure:9416: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5

configure:9420: $? = 0

configure:9433: result: yes

configure:9462: checking if gcc static flag -static works

configure:9490: result: yes

configure:9505: checking if gcc supports -c -o file.o

configure:9526: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5

configure:9530: $? = 0

configure:9552: result: yes

configure:9560: checking if gcc supports -c -o file.o

configure:9607: result: yes

configure:9640: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:10899: result: yes

configure:10936: checking whether -lc should be explicitly linked in

configure:10944: gcc -c -g -O2 conftest.c >&5

configure:10947: $? = 0

configure:10962: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1

configure:10965: $? = 0

configure:10979: result: no

configure:11139: checking dynamic linker characteristics

configure:11720: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5

configure:11720: $? = 0

configure:11957: result: GNU/Linux ld.so

configure:12079: checking how to hardcode library paths into programs

configure:12104: result: immediate

configure:12652: checking whether stripping libraries is possible

configure:12657: result: yes

configure:12692: checking if libtool supports shared libraries

configure:12694: result: yes

configure:12697: checking whether to build shared libraries

configure:12722: result: yes

configure:12725: checking whether to build static libraries

configure:12729: result: yes

configure:12814: checking for bash

configure:12844: result: /bin/bash

configure:12911: checking for gcc

configure:12938: result: gcc

configure:13003: checking for g++

configure:13019: found /usr/bin/g++

configure:13030: result: g++

configure:13052: checking for gcc option to accept ISO C99

configure:13201: gcc -c -g -O2 conftest.c >&5

configure:13201: $? = 0

configure:13214: result: none needed

configure:13342: checking for C++ compiler version

configure:13351: g++ --version >&5

g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13362: $? = 0

configure:13351: g++ -v >&5

Using built-in specs.

COLLECT_GCC=g++

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper

OFFLOAD_TARGET_NAMES=nvptx-none

OFFLOAD_TARGET_DEFAULT=1

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)

configure:13362: $? = 0

configure:13351: g++ -V >&5

g++: error: unrecognized command line option '-V'

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 1

configure:13351: g++ -qversion >&5

g++: error: unrecognized command line option '-qversion'; did you mean '--version'?

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 1

configure:13366: checking whether we are using the GNU C++ compiler

configure:13385: g++ -c conftest.cpp >&5

configure:13385: $? = 0

configure:13394: result: yes

configure:13403: checking whether g++ accepts -g

configure:13423: g++ -c -g conftest.cpp >&5

configure:13423: $? = 0

configure:13464: result: yes

configure:13489: checking dependency style of g++

configure:13600: result: gcc3

configure:13633: checking how to run the C++ preprocessor

configure:13660: g++ -E conftest.cpp

configure:13660: $? = 0

configure:13674: g++ -E conftest.cpp

conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^~~~~~~~~~~~~~~~~~

compilation terminated.

configure:13674: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13699: result: g++ -E

configure:13719: g++ -E conftest.cpp

configure:13719: $? = 0

configure:13733: g++ -E conftest.cpp

conftest.cpp:24:10: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^~~~~~~~~~~~~~~~~~

compilation terminated.

configure:13733: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13895: checking for ld used by g++

configure:13962: result: /usr/bin/ld -m elf_x86_64

configure:13969: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld

configure:13984: result: yes

configure:14039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15112: result: yes

configure:15148: g++ -c -g -O2 conftest.cpp >&5

configure:15151: $? = 0

configure:15632: checking for g++ option to produce PIC

configure:15639: result: -fPIC -DPIC

configure:15647: checking if g++ PIC flag -fPIC -DPIC works

configure:15665: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:15669: $? = 0

configure:15682: result: yes

configure:15705: checking if g++ static flag -static works

configure:15733: result: yes

configure:15745: checking if g++ supports -c -o file.o

configure:15766: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5

configure:15770: $? = 0

configure:15792: result: yes

configure:15797: checking if g++ supports -c -o file.o

configure:15844: result: yes

configure:15874: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15914: result: yes

configure:16055: checking dynamic linker characteristics

configure:16800: result: GNU/Linux ld.so

configure:16865: checking how to hardcode library paths into programs

configure:16890: result: immediate

configure:16983: checking for g77

configure:17013: result: no

configure:16983: checking for xlf

configure:17013: result: no

configure:16983: checking for f77

configure:17013: result: no

configure:16983: checking for frt

configure:17013: result: no

configure:16983: checking for pgf77

configure:17013: result: no

configure:16983: checking for cf77

configure:17013: result: no

configure:16983: checking for fort77

configure:17013: result: no

configure:16983: checking for fl32

configure:17013: result: no

configure:16983: checking for af77

configure:17013: result: no

configure:16983: checking for xlf90

configure:17013: result: no

configure:16983: checking for f90

configure:17013: result: no

configure:16983: checking for pgf90

configure:17013: result: no

configure:16983: checking for pghpf

configure:17013: result: no

configure:16983: checking for epcf90

configure:17013: result: no

configure:16983: checking for gfortran

configure:17013: result: no

configure:16983: checking for g95

configure:17013: result: no

configure:16983: checking for xlf95

configure:17013: result: no

configure:16983: checking for f95

configure:17013: result: no

configure:16983: checking for fort

configure:17013: result: no

configure:16983: checking for ifort

configure:17013: result: no

configure:16983: checking for ifc

configure:17013: result: no

configure:16983: checking for efc

configure:17013: result: no

configure:16983: checking for pgfortran

configure:17013: result: no

configure:16983: checking for pgf95

configure:17013: result: no

configure:16983: checking for lf95

configure:17013: result: no

configure:16983: checking for ftn

configure:17013: result: no

configure:16983: checking for nagfor

configure:17013: result: no

configure:17036: checking for Fortran 77 compiler version

configure:17045: --version >&5

./configure: line 17047: --version: command not found

configure:17056: $? = 127

configure:17045: -v >&5

./configure: line 17047: -v: command not found

configure:17056: $? = 127

configure:17045: -V >&5

./configure: line 17047: -V: command not found

configure:17056: $? = 127

configure:17045: -qversion >&5

./configure: line 17047: -qversion: command not found

configure:17056: $? = 127

configure:17065: checking whether we are using the GNU Fortran 77 compiler

configure:17078: -c conftest.F >&5

./configure: line 2176: -c: command not found

configure:17078: $? = 127

configure: failed program was:

| program main

| #ifndef __GNUC__

| choke me

| #endif

|

| end

configure:17087: result: no

configure:17093: checking whether accepts -g

configure:17104: -c -g conftest.f >&5

./configure: line 2176: -c: command not found

configure:17104: $? = 127

configure: failed program was:

| program main

|

| end

configure:17112: result: no

configure:20083: checking for C/C++ restrict keyword

configure:20108: gcc -c -g -O2 conftest.c >&5

configure:20108: $? = 0

configure:20116: result: __restrict

configure:20136: checking whether g++ supports C++11 features by default

configure:20430: g++ -c -g -O2 conftest.cpp >&5

configure:20430: $? = 0

configure:20437: result: yes

configure:21122: checking for gcc option to support OpenMP

configure:21137: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:28:2: error: unknown type name 'choke'

choke me

^~~~~

In file included from conftest.c:30:0:

/usr/lib/gcc/x86_64-linux-gnu/7/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'

typedef struct

^~~~~~~

configure:21137: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| /* end confdefs.h. */

|

| #ifndef _OPENMP

| choke me

| #endif

| #include <omp.h>

| int main () { return omp_get_num_threads (); }

|

configure:21155: gcc -o conftest -g -O2 -fopenmp conftest.c >&5

configure:21155: $? = 0

configure:21169: result: -fopenmp

configure:21223: checking for ar

configure:21250: result: ar

configure:21407: checking for ld

configure:21434: result: /usr/bin/ld -m elf_x86_64

configure:21499: checking for nm

configure:21526: result: /usr/bin/nm -B

configure:21591: checking for ar

configure:21618: result: ar

configure:21683: checking for as

configure:21699: found /usr/bin/as

configure:21710: result: as

configure:21775: checking for dlltool

configure:21802: result: false

configure:21867: checking for objdump

configure:21894: result: objdump

configure:21959: checking for strip

configure:21986: result: strip

configure:22051: checking for ranlib

configure:22078: result: ranlib

configure:22114: checking for special C compiler options needed for large files

configure:22159: result: no

configure:22165: checking for _FILE_OFFSET_BITS value needed for large files

configure:22190: gcc -c -g -O2 conftest.c >&5

configure:22190: $? = 0

configure:22222: result: no

configure:22315: checking for stdlib.h

configure:22315: result: yes

configure:22315: checking for unistd.h

configure:22315: result: yes

configure:22315: checking for sys/param.h

configure:22315: gcc -c -g -O2 conftest.c >&5

configure:22315: $? = 0

configure:22315: result: yes

configure:22335: checking for getpagesize

configure:22335: gcc -o conftest -g -O2 conftest.c >&5

configure:22335: $? = 0

configure:22335: result: yes

configure:22344: checking for working mmap

configure:22491: gcc -o conftest -g -O2 conftest.c >&5

configure:22491: $? = 0

configure:22491: ./conftest

configure:22491: $? = 0

configure:22501: result: yes

configure:22512: checking for struct stat.st_blksize

configure:22512: gcc -c -g -O2 conftest.c >&5

configure:22512: $? = 0

configure:22512: result: yes

configure:22526: checking sys/resource.h usability

configure:22526: gcc -c -g -O2 conftest.c >&5

configure:22526: $? = 0

configure:22526: result: yes

configure:22526: checking sys/resource.h presence

configure:22526: gcc -E conftest.c

configure:22526: $? = 0

configure:22526: result: yes

configure:22526: checking for sys/resource.h

configure:22526: result: yes

configure:22538: checking sys/times.h usability

configure:22538: gcc -c -g -O2 conftest.c >&5

configure:22538: $? = 0

configure:22538: result: yes

configure:22538: checking sys/times.h presence

configure:22538: gcc -E conftest.c

configure:22538: $? = 0

configure:22538: result: yes

configure:22538: checking for sys/times.h

configure:22538: result: yes

configure:22550: checking malloc.h usability

configure:22550: gcc -c -g -O2 conftest.c >&5

configure:22550: $? = 0

configure:22550: result: yes

configure:22550: checking malloc.h presence

configure:22550: gcc -E conftest.c

configure:22550: $? = 0

configure:22550: result: yes

configure:22550: checking for malloc.h

configure:22550: result: yes

configure:22562: checking glob.h usability

configure:22562: gcc -c -g -O2 conftest.c >&5

configure:22562: $? = 0

configure:22562: result: yes

configure:22562: checking glob.h presence

configure:22562: gcc -E conftest.c

configure:22562: $? = 0

configure:22562: result: yes

configure:22562: checking for glob.h

configure:22562: result: yes

configure:22574: checking fnmatch.h usability

configure:22574: gcc -c -g -O2 conftest.c >&5

configure:22574: $? = 0

configure:22574: result: yes

configure:22574: checking fnmatch.h presence

configure:22574: gcc -E conftest.c

configure:22574: $? = 0

configure:22574: result: yes

configure:22574: checking for fnmatch.h

configure:22574: result: yes

configure:22586: checking wordexp.h usability

configure:22586: gcc -c -g -O2 conftest.c >&5

configure:22586: $? = 0

configure:22586: result: yes

configure:22586: checking wordexp.h presence

configure:22586: gcc -E conftest.c

configure:22586: $? = 0

configure:22586: result: yes

configure:22586: checking for wordexp.h

configure:22586: result: yes

configure:22598: checking execinfo.h usability

configure:22598: gcc -c -g -O2 conftest.c >&5

configure:22598: $? = 0

configure:22598: result: yes

configure:22598: checking execinfo.h presence

configure:22598: gcc -E conftest.c

configure:22598: $? = 0

configure:22598: result: yes

configure:22598: checking for execinfo.h

configure:22598: result: yes

configure:22612: checking for mallinfo

configure:22612: gcc -o conftest -g -O2 conftest.c >&5

configure:22612: $? = 0

configure:22612: result: yes

configure:22623: checking for backtrace

configure:22623: gcc -o conftest -g -O2 conftest.c >&5

configure:22623: $? = 0

configure:22623: result: yes

configure:22636: checking for getrlimit

configure:22636: gcc -o conftest -g -O2 conftest.c >&5

configure:22636: $? = 0

configure:22636: result: yes

configure:22711: checking for floor in -lm

configure:22736: gcc -o conftest -g -O2 conftest.c -lm >&5

conftest.c:52:6: warning: conflicting types for built-in function 'floor' [-Wbuiltin-declaration-mismatch]

char floor ();

^~~~~

configure:22736: $? = 0

configure:22745: result: yes

configure:22759: checking for feenableexcept

configure:22759: gcc -o conftest -g -O2 conftest.c -lm >&5

configure:22759: $? = 0

configure:22759: result: yes

configure:22769: checking for fenv_t.__control

configure:22769: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:53:13: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?

if (ac_aggr.__control)

^~~~~~~~~

__control_word

configure:22769: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22769: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:53:20: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?

if (sizeof ac_aggr.__control)

^~~~~~~~~

__control_word

configure:22769: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (sizeof ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22769: result: no

configure:22779: checking for fenv_t.__mxcsr

configure:22779: gcc -c -g -O2 conftest.c >&5

configure:22779: $? = 0

configure:22779: result: yes

configure:22802: checking C preprocessor flags for Fortran calling convention cfortran.h

configure:22888: result: (probed)

configure:23153: checking for DATA support

configure:23167: result:

configure:23319: checking if compiler needs -Werror to reject unknown flags

configure:23335: gcc -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5

gcc: error: unrecognized command line option '-Wunknown-warning-option'

configure:23335: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| int foo(void);

| int

| main ()

| {

| foo()

| ;

| return 0;

| }

configure:23340: result: no

configure:23406: checking for the pthreads library -lpthreads

configure:23444: gcc -o conftest -g -O2 -fopenmp conftest.c -lpthreads -lm >&5

/usr/bin/ld: cannot find -lpthreads

collect2: error: ld returned 1 exit status

configure:23444: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void *a) { a = 0; }

| static void *start_routine(void *a) { return a; }

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th, 0, start_routine, 0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0) /* ; */

| ;

| return 0;

| }

configure:23453: result: no

configure:23351: checking whether pthreads work without any flags

configure:23444: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5

configure:23444: $? = 0

configure:23453: result: yes

configure:23472: checking for joinable pthread attribute

configure:23487: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5

configure:23487: $? = 0

configure:23493: result: PTHREAD_CREATE_JOINABLE

configure:23503: checking if more special flags are required for pthreads

configure:23518: result: no

configure:23524: checking for PTHREAD_PRIO_INHERIT

configure:23541: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5

configure:23541: $? = 0

configure:23550: result: yes

configure:23899: checking for szlib library

configure:23901: result: suppressed

configure:24067: checking hdf5.h usability

configure:24067: gcc -c -g -O2 -fopenmp -I/usr//include conftest.c >&5

conftest.c:84:10: fatal error: hdf5.h: No such file or directory

#include <hdf5.h>

^~~~~~~~

compilation terminated.

configure:24067: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| #include <hdf5.h>

configure:24067: result: no

configure:24067: checking hdf5.h presence

configure:24067: gcc -E -I/usr//include conftest.c

conftest.c:51:10: fatal error: hdf5.h: No such file or directory

#include <hdf5.h>

^~~~~~~~

compilation terminated.

configure:24067: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| /* end confdefs.h. */

| #include <hdf5.h>

configure:24067: result: no

configure:24067: checking for hdf5.h

configure:24067: result: no

configure:24077: checking for library containing H5Fopen

configure:24108: gcc -o conftest -g -O2 -fopenmp -I/usr//include -L/usr//lib conftest.c -lm >&5

/tmp/ccgFjMu4.o: In function `main':

/opt/cdo-install/cdo-1.9.7.1/conftest.c:62: undefined reference to `H5Fopen'

collect2: error: ld returned 1 exit status

configure:24108: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:24108: gcc -o conftest -g -O2 -fopenmp -I/usr//include -L/usr//lib conftest.c -lhdf5 -lm >&5

/usr/bin/ld: cannot find -lhdf5

collect2: error: ld returned 1 exit status

configure:24108: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define C_VERSION "gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:24125: result: no

configure:24134: error: Cannot link to hdf5!

## ---------------- ##

## Cache variables. ##

## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu

ac_cv_c_compiler_gnu=yes

ac_cv_c_restrict=__restrict

ac_cv_cxx_compiler_gnu=yes

ac_cv_env_CCC_set=

ac_cv_env_CCC_value=

ac_cv_env_CC_set=

ac_cv_env_CC_value=

ac_cv_env_CFLAGS_set=

ac_cv_env_CFLAGS_value=

ac_cv_env_CPPFLAGS_set=

ac_cv_env_CPPFLAGS_value=

ac_cv_env_CPP_set=

ac_cv_env_CPP_value=

ac_cv_env_CXXCPP_set=

ac_cv_env_CXXCPP_value=

ac_cv_env_CXXFLAGS_set=

ac_cv_env_CXXFLAGS_value=

ac_cv_env_CXX_set=

ac_cv_env_CXX_value=

ac_cv_env_DCE_UUID_C_INCLUDE_set=

ac_cv_env_DCE_UUID_C_INCLUDE_value=

ac_cv_env_DCE_UUID_C_LIB_set=

ac_cv_env_DCE_UUID_C_LIB_value=

ac_cv_env_F77_set=

ac_cv_env_F77_value=

ac_cv_env_FFLAGS_set=

ac_cv_env_FFLAGS_value=

ac_cv_env_LDFLAGS_set=

ac_cv_env_LDFLAGS_value=

ac_cv_env_LIBS_set=

ac_cv_env_LIBS_value=

ac_cv_env_LT_SYS_LIBRARY_PATH_set=

ac_cv_env_LT_SYS_LIBRARY_PATH_value=

ac_cv_env_OSSP_UUID_C_INCLUDE_set=

ac_cv_env_OSSP_UUID_C_INCLUDE_value=

ac_cv_env_OSSP_UUID_C_LIB_set=

ac_cv_env_OSSP_UUID_C_LIB_value=

ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set=

ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value=

ac_cv_env_UTIL_LINUX_UUID_C_LIB_set=

ac_cv_env_UTIL_LINUX_UUID_C_LIB_value=

ac_cv_env_build_alias_set=

ac_cv_env_build_alias_value=

ac_cv_env_host_alias_set=

ac_cv_env_host_alias_value=

ac_cv_env_target_alias_set=

ac_cv_env_target_alias_value=

ac_cv_f77_compiler_gnu=no

ac_cv_func_backtrace=yes

ac_cv_func_feenableexcept=yes

ac_cv_func_getpagesize=yes

ac_cv_func_getrlimit=yes

ac_cv_func_mallinfo=yes

ac_cv_func_mmap_fixed_mapped=yes

ac_cv_header_dlfcn_h=yes

ac_cv_header_execinfo_h=yes

ac_cv_header_fnmatch_h=yes

ac_cv_header_glob_h=yes

ac_cv_header_hdf5_h=no

ac_cv_header_inttypes_h=yes

ac_cv_header_malloc_h=yes

ac_cv_header_memory_h=yes

ac_cv_header_stdc=yes

ac_cv_header_stdint_h=yes

ac_cv_header_stdlib_h=yes

ac_cv_header_string_h=yes

ac_cv_header_strings_h=yes

ac_cv_header_sys_param_h=yes

ac_cv_header_sys_resource_h=yes

ac_cv_header_sys_stat_h=yes

ac_cv_header_sys_times_h=yes

ac_cv_header_sys_types_h=yes

ac_cv_header_unistd_h=yes

ac_cv_header_wordexp_h=yes

ac_cv_host=x86_64-pc-linux-gnu

ac_cv_lib_m_floor=yes

ac_cv_member_fenv_t___control=no

ac_cv_member_fenv_t___mxcsr=yes

ac_cv_member_struct_stat_st_blksize=yes

ac_cv_objext=o

ac_cv_path_EGREP='/bin/grep -E'

ac_cv_path_FGREP='/bin/grep -F'

ac_cv_path_GREP=/bin/grep

ac_cv_path_SED=/bin/sed

ac_cv_path_ac_pt_BASH=/bin/bash

ac_cv_path_install='/usr/bin/install -c'

ac_cv_path_lt_DD=/bin/dd

ac_cv_path_mkdir=/bin/mkdir

ac_cv_prog_AWK=gawk

ac_cv_prog_CPP='gcc -E'

ac_cv_prog_CXXCPP='g++ -E'

ac_cv_prog_ac_ct_AR=ar

ac_cv_prog_ac_ct_AS=as

ac_cv_prog_ac_ct_CC=gcc

ac_cv_prog_ac_ct_CXX=g++

ac_cv_prog_ac_ct_DLLTOOL=false

ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'

ac_cv_prog_ac_ct_MANIFEST_TOOL=mt

ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'

ac_cv_prog_ac_ct_OBJDUMP=objdump

ac_cv_prog_ac_ct_RANLIB=ranlib

ac_cv_prog_ac_ct_STRIP=strip

ac_cv_prog_c_openmp=-fopenmp

ac_cv_prog_cc_c89=

ac_cv_prog_cc_c99=

ac_cv_prog_cc_g=yes

ac_cv_prog_cxx_g=yes

ac_cv_prog_f77_g=no

ac_cv_prog_make_make_set=yes

ac_cv_search_H5Fopen=no

ac_cv_sys_file_offset_bits=no

ac_cv_sys_largefile_CC=no

acx_cv_cf_flag=' (probed)'

am_cv_CC_dependencies_compiler_type=gcc3

am_cv_CXX_dependencies_compiler_type=gcc3

am_cv_ar_interface=ar

am_cv_make_support_nested_variables=yes

am_cv_prog_cc_c_o=yes

ax_cv_PTHREAD_PRIO_INHERIT=yes

ax_cv_cxx_compile_cxx11=yes

lt_cv_ar_at_file=@

lt_cv_archive_cmds_need_lc=no

lt_cv_deplibs_check_method=pass_all

lt_cv_file_magic_cmd='$MAGIC_CMD'

lt_cv_file_magic_test_file=

lt_cv_ld_reload_flag=-r

lt_cv_nm_interface='BSD nm'

lt_cv_objdir=.libs

lt_cv_path_LD=/usr/bin/ld

lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'

lt_cv_path_NM='/usr/bin/nm -B'

lt_cv_path_mainfest_tool=no

lt_cv_prog_compiler_c_o=yes

lt_cv_prog_compiler_c_o_CXX=yes

lt_cv_prog_compiler_pic='-fPIC -DPIC'

lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'

lt_cv_prog_compiler_pic_works=yes

lt_cv_prog_compiler_pic_works_CXX=yes

lt_cv_prog_compiler_rtti_exceptions=no

lt_cv_prog_compiler_static_works=yes

lt_cv_prog_compiler_static_works_CXX=yes

lt_cv_prog_gnu_ld=yes

lt_cv_prog_gnu_ldcxx=yes

lt_cv_sharedlib_from_linklib_cmd='printf %s\n'

lt_cv_shlibpath_overrides_runpath=yes

lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''

lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''

lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''

lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''

lt_cv_sys_global_symbol_to_import=

lt_cv_sys_max_cmd_len=1572864

lt_cv_to_host_file_cmd=func_convert_file_noop

lt_cv_to_tool_file_cmd=func_convert_file_noop

lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##

## Output variables. ##

## ----------------- ##

ACLOCAL='${SHELL} /opt/cdo-install/cdo-1.9.7.1/config/missing aclocal-1.16'

AMDEPBACKSLASH='\'

AMDEP_FALSE='#'

AMDEP_TRUE=''

AMTAR='$${TAR-tar}'

AM_BACKSLASH='\'

AM_CPPFLAGS=''

AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'

AM_DEFAULT_VERBOSITY='1'

AM_V='$(V)'

AR='ar'

AS='as'

AUTOCONF='${SHELL} /opt/cdo-install/cdo-1.9.7.1/config/missing autoconf'

AUTOHEADER='${SHELL} /opt/cdo-install/cdo-1.9.7.1/config/missing autoheader'

AUTOMAKE='${SHELL} /opt/cdo-install/cdo-1.9.7.1/config/missing automake-1.16'

AWK='gawk'

BASH='/bin/bash'

BUILD_AVX2_TESTS_FALSE=''

BUILD_AVX2_TESTS_TRUE=''

BUILD_AVX_TESTS_FALSE=''

BUILD_AVX_TESTS_TRUE=''

BUILD_SSE42_TESTS_FALSE=''

BUILD_SSE42_TESTS_TRUE=''

CC='gcc'

CCDEPMODE='depmode=gcc3'

CFLAGS='-g -O2 -fopenmp '

CLDFLAGS=''

CLIBS=''

CMOR_LIBS=''

CPP='gcc -E'

CPPFLAGS='-I/usr//include '

CURL_INCLUDE=''

CURL_LDFLAGS=''

CXX='g++'

CXXCPP='g++ -E'

CXXDEPMODE='depmode=gcc3'

CXXFLAGS='-g -O2 -fopenmp '

CYGPATH_W='echo'

DCE_UUIDROOT=''