CDO

checking build system type... x86_64-pc-linux-gnu

checking host system type... x86_64-pc-linux-gnu

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... /bin/mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking whether to enable maintainer-specific portions of Makefiles... no

checking whether make supports the include directive... yes (GNU style)

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking dependency style of gcc... gcc3

checking for ar... ar

checking the archiver (ar) interface... ar

configure: setting up libtool

checking how to print strings... printf

checking for a sed that does not truncate output... /bin/sed

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 1572864

checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop

checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for archiver @FILE support... @

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for sysroot... no

checking for a working dd... /bin/dd

checking how to truncate binary pipes... /bin/dd bs=4096 count=1

checking for mt... mt

checking if mt is a manifest tool... no

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

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checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking whether -lc should be explicitly linked in... no

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking for bash... /bin/bash

checking for gcc... (cached) gcc

checking for g++... g++

checking for gcc option to accept ISO C99... none needed

checking whether we are using the GNU C++ compiler... yes

checking whether g++ accepts -g... yes

checking dependency style of g++... gcc3

checking how to run the C++ preprocessor... g++ -E

checking for ld used by g++... /usr/bin/ld -m elf_x86_64

checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes

checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking for g++ option to produce PIC... -fPIC -DPIC

checking if g++ PIC flag -fPIC -DPIC works... yes

checking if g++ static flag -static works... yes

checking if g++ supports -c -o file.o... yes

checking if g++ supports -c -o file.o... (cached) yes

checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes

checking dynamic linker characteristics... (cached) GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

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checking whether we are using the GNU Fortran 77 compiler... no

checking whether accepts -g... no

checking for C/C++ restrict keyword... __restrict

checking whether g++ supports C++11 features by default... yes

checking for gcc option to support OpenMP... -fopenmp

checking for ar... (cached) ar

checking for ld... /usr/bin/ld -m elf_x86_64

checking for nm... /usr/bin/nm -B

checking for ar... (cached) ar

checking for as... as

checking for dlltool... false

checking for objdump... (cached) objdump

checking for strip... (cached) strip

checking for ranlib... (cached) ranlib

checking for special C compiler options needed for large files... no

checking for _FILE_OFFSET_BITS value needed for large files... no

checking for stdlib.h... (cached) yes

checking for unistd.h... (cached) yes

checking for sys/param.h... yes

checking for getpagesize... yes

checking for working mmap... yes

checking for struct stat.st_blksize... yes

checking sys/resource.h usability... yes

checking sys/resource.h presence... yes

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checking sys/times.h usability... yes

checking sys/times.h presence... yes

checking for sys/times.h... yes

checking malloc.h usability... yes

checking malloc.h presence... yes

checking for malloc.h... yes

checking glob.h usability... yes

checking glob.h presence... yes

checking for glob.h... yes

checking fnmatch.h usability... yes

checking fnmatch.h presence... yes

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checking wordexp.h usability... yes

checking wordexp.h presence... yes

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checking execinfo.h usability... yes

checking execinfo.h presence... yes

checking for execinfo.h... yes

checking for mallinfo... yes

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checking for floor in -lm... yes

checking for feenableexcept... yes

checking for fenv_t.__control... no

checking for fenv_t.__mxcsr... yes

checking C preprocessor flags for Fortran calling convention cfortran.h... (probed)

checking for DATA support...

checking if compiler needs -Werror to reject unknown flags... no

checking for the pthreads library -lpthreads... no

checking whether pthreads work without any flags... yes

checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE

checking if more special flags are required for pthreads... no

checking for PTHREAD_PRIO_INHERIT... yes

CC:gcc CFLAGS:-g -O2 -fopenmp LIBS: -lm

checking for szlib library... suppressed

checking hdf5.h usability... no

checking hdf5.h presence... no

checking for hdf5.h... no

checking for library containing H5Fopen... no

configure: error: Cannot link to hdf5!