CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.7.1, which was

generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --with-netcdf=/usr/local/netcdf --with-hdf5=/usr/local/hdf5-1.10.5

## --------- ##

## Platform. ##

## --------- ##

hostname = carson.math.uwm.edu

uname -m = x86_64

uname -r = 4.8.12-1.el7.elrepo.x86_64

uname -s = Linux

uname -v = #1 SMP Fri Dec 2 12:31:53 EST 2016

/usr/bin/uname -p = x86_64

/bin/uname -X = unknown

/bin/arch = x86_64

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /opt/pgi/linux86-64/2015/bin

PATH: /opt/intel/compilers_and_libraries_2018.3.222/linux/bin/intel64

PATH: /opt/intel/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin

PATH: /usr/lib64/qt-3.3/bin

PATH: /home/strike/perl5/bin

PATH: /opt/pgi/linux86-64/2015/bin

PATH: /opt/intel/compilers_and_libraries_2018.3.222/linux/bin/intel64

PATH: /opt/intel/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin

PATH: /usr/local/bin

PATH: /usr/local/sbin

PATH: /usr/bin

PATH: /usr/sbin

PATH: /bin

PATH: /sbin

PATH: /opt/oracle/developerstudio12.5/bin

PATH: /usr/local/netcdf-gfortran/bin

PATH: /usr/local/bin

PATH: /opt/open64/bin

PATH: /opt/Canopy

PATH: /usr/local/ncl-5.2.1/bin

PATH: /home/strike/.local/bin

PATH: /home/strike/bin

PATH: /opt/oracle/developerstudio12.5/bin

PATH: /usr/local/netcdf-gfortran/bin

PATH: /usr/local/bin

PATH: /opt/open64/bin

PATH: /opt/Canopy

PATH: /usr/local/ncl-5.2.1/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2879: checking build system type

configure:2893: result: x86_64-pc-linux-gnu

configure:2913: checking host system type

configure:2926: result: x86_64-pc-linux-gnu

configure:2965: checking for a BSD-compatible install

configure:3033: result: /usr/bin/install -c

configure:3044: checking whether build environment is sane

configure:3099: result: yes

configure:3250: checking for a thread-safe mkdir -p

configure:3289: result: /usr/bin/mkdir -p

configure:3296: checking for gawk

configure:3312: found /usr/bin/gawk

configure:3323: result: gawk

configure:3334: checking whether make sets $(MAKE)

configure:3356: result: yes

configure:3385: checking whether make supports nested variables

configure:3402: result: yes

configure:3531: checking whether to enable maintainer-specific portions of Makefiles

configure:3540: result: no

configure:3559: checking whether make supports the include directive

configure:3574: make -f confmf.GNU && cat confinc.out

this is the am__doit target

configure:3577: $? = 0

configure:3596: result: yes (GNU style)

configure:3666: checking for gcc

configure:3682: found /usr/bin/gcc

configure:3693: result: gcc

configure:3922: checking for C compiler version

configure:3931: gcc --version >&5

gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)

Copyright (C) 2015 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3942: $? = 0

configure:3931: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC)

configure:3942: $? = 0

configure:3931: gcc -V >&5

gcc: error: unrecognized command line option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 4

configure:3931: gcc -qversion >&5

gcc: error: unrecognized command line option '-qversion'

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 4

configure:3962: checking whether the C compiler works

configure:3984: gcc conftest.c >&5

configure:3988: $? = 0

configure:4036: result: yes

configure:4039: checking for C compiler default output file name

configure:4041: result: a.out

configure:4047: checking for suffix of executables

configure:4054: gcc -o conftest conftest.c >&5

configure:4058: $? = 0

configure:4080: result:

configure:4102: checking whether we are cross compiling

configure:4110: gcc -o conftest conftest.c >&5

configure:4114: $? = 0

configure:4121: ./conftest

configure:4125: $? = 0

configure:4140: result: no

configure:4145: checking for suffix of object files

configure:4167: gcc -c conftest.c >&5

configure:4171: $? = 0

configure:4192: result: o

configure:4196: checking whether we are using the GNU C compiler

configure:4215: gcc -c conftest.c >&5

configure:4215: $? = 0

configure:4224: result: yes

configure:4233: checking whether gcc accepts -g

configure:4253: gcc -c -g conftest.c >&5

configure:4253: $? = 0

configure:4294: result: yes

configure:4311: checking for gcc option to accept ISO C89

configure:4374: gcc -c -g -O2 conftest.c >&5

configure:4374: $? = 0

configure:4387: result: none needed

configure:4412: checking whether gcc understands -c and -o together

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4449: result: yes

configure:4468: checking dependency style of gcc

configure:4579: result: gcc3

configure:4644: checking for ar

configure:4660: found /usr/bin/ar

configure:4671: result: ar

configure:4697: checking the archiver (ar) interface

configure:4713: gcc -c -g -O2 conftest.c >&5

configure:4713: $? = 0

configure:4715: ar cru libconftest.a conftest.o >&5

configure:4718: $? = 0

configure:4746: result: ar

configure:4767: setting up libtool

configure:4815: checking how to print strings

configure:4842: result: printf

configure:4863: checking for a sed that does not truncate output

configure:4927: result: /usr/bin/sed

configure:4945: checking for grep that handles long lines and -e

configure:5003: result: /usr/bin/grep

configure:5008: checking for egrep

configure:5070: result: /usr/bin/grep -E

configure:5075: checking for fgrep

configure:5137: result: /usr/bin/grep -F

configure:5172: checking for ld used by gcc

configure:5239: result: /usr/bin/ld

configure:5246: checking if the linker (/usr/bin/ld) is GNU ld

configure:5261: result: yes

configure:5273: checking for BSD- or MS-compatible name lister (nm)

configure:5327: result: /usr/bin/nm -B

configure:5457: checking the name lister (/usr/bin/nm -B) interface

configure:5464: gcc -c -g -O2 conftest.c >&5

configure:5467: /usr/bin/nm -B "conftest.o"

configure:5470: output

0000000000000000 B some_variable

configure:5477: result: BSD nm

configure:5480: checking whether ln -s works

configure:5484: result: yes

configure:5492: checking the maximum length of command line arguments

configure:5623: result: 1610612736

configure:5671: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format

configure:5711: result: func_convert_file_noop

configure:5718: checking how to convert x86_64-pc-linux-gnu file names to toolchain format

configure:5738: result: func_convert_file_noop

configure:5745: checking for /usr/bin/ld option to reload object files

configure:5752: result: -r

configure:5826: checking for objdump

configure:5842: found /usr/bin/objdump

configure:5853: result: objdump

configure:5885: checking how to recognize dependent libraries

configure:6085: result: pass_all

configure:6170: checking for dlltool

configure:6200: result: no

configure:6230: checking how to associate runtime and link libraries

configure:6257: result: printf %s\n

configure:6381: checking for archiver @FILE support

configure:6398: gcc -c -g -O2 conftest.c >&5

configure:6398: $? = 0

configure:6401: ar cru libconftest.a @conftest.lst >&5

configure:6404: $? = 0

configure:6409: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:6412: $? = 1

configure:6424: result: @

configure:6482: checking for strip

configure:6498: found /usr/bin/strip

configure:6509: result: strip

configure:6581: checking for ranlib

configure:6597: found /usr/bin/ranlib

configure:6608: result: ranlib

configure:6710: checking command to parse /usr/bin/nm -B output from gcc object

configure:6863: gcc -c -g -O2 conftest.c >&5

configure:6866: $? = 0

configure:6870: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6873: $? = 0

configure:6939: gcc -o conftest -g -O2 conftest.c conftstm.o >&5

configure:6942: $? = 0

configure:6980: result: ok

configure:7027: checking for sysroot

configure:7057: result: no

configure:7064: checking for a working dd

configure:7102: result: /usr/bin/dd

configure:7106: checking how to truncate binary pipes

configure:7121: result: /usr/bin/dd bs=4096 count=1

configure:7257: gcc -c -g -O2 conftest.c >&5

configure:7260: $? = 0

configure:7450: checking for mt

configure:7466: found /usr/bin/mt

configure:7477: result: mt

configure:7500: checking if mt is a manifest tool

configure:7506: mt '-?'

usage: mt [-v] [--version] [-h] [ -f device ] command [ count ]

configure:7514: result: no

configure:8191: checking how to run the C preprocessor

configure:8222: gcc -E conftest.c

configure:8222: $? = 0

configure:8236: gcc -E conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:8236: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8261: result: gcc -E

configure:8281: gcc -E conftest.c

configure:8281: $? = 0

configure:8295: gcc -E conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:8295: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8324: checking for ANSI C header files

configure:8344: gcc -c -g -O2 conftest.c >&5

configure:8344: $? = 0

configure:8417: gcc -o conftest -g -O2 conftest.c >&5

configure:8417: $? = 0

configure:8417: ./conftest

configure:8417: $? = 0

configure:8428: result: yes

configure:8441: checking for sys/types.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for sys/stat.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdlib.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for string.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for memory.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for strings.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for inttypes.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdint.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for unistd.h

configure:8441: gcc -c -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8455: checking for dlfcn.h

configure:8455: gcc -c -g -O2 conftest.c >&5

configure:8455: $? = 0

configure:8455: result: yes

configure:8711: checking for objdir

configure:8726: result: .libs

configure:8990: checking if gcc supports -fno-rtti -fno-exceptions

configure:9008: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]

configure:9012: $? = 0

configure:9025: result: no

configure:9383: checking for gcc option to produce PIC

configure:9390: result: -fPIC -DPIC

configure:9398: checking if gcc PIC flag -fPIC -DPIC works

configure:9416: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5

configure:9420: $? = 0

configure:9433: result: yes

configure:9462: checking if gcc static flag -static works

configure:9490: result: no

configure:9505: checking if gcc supports -c -o file.o

configure:9526: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5

configure:9530: $? = 0

configure:9552: result: yes

configure:9560: checking if gcc supports -c -o file.o

configure:9607: result: yes

configure:9640: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:10899: result: yes

configure:10936: checking whether -lc should be explicitly linked in

configure:10944: gcc -c -g -O2 conftest.c >&5

configure:10947: $? = 0

configure:10962: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1

configure:10965: $? = 0

configure:10979: result: no

configure:11139: checking dynamic linker characteristics

configure:11720: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5

configure:11720: $? = 0

configure:11957: result: GNU/Linux ld.so

configure:12079: checking how to hardcode library paths into programs

configure:12104: result: immediate

configure:12652: checking whether stripping libraries is possible

configure:12657: result: yes

configure:12692: checking if libtool supports shared libraries

configure:12694: result: yes

configure:12697: checking whether to build shared libraries

configure:12722: result: yes

configure:12725: checking whether to build static libraries

configure:12729: result: yes

configure:12814: checking for bash

configure:12844: result: /bin/sh

configure:12911: checking for gcc

configure:12938: result: gcc

configure:13003: checking for g++

configure:13019: found /usr/bin/g++

configure:13030: result: g++

configure:13052: checking for gcc option to accept ISO C99

configure:13201: gcc -c -g -O2 conftest.c >&5

conftest.c:74:29: error: expected ';', ',' or ')' before 'text'

test_restrict (ccp restrict text)

^

conftest.c: In function 'main':

conftest.c:128:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'

char *restrict newvar = "Another string";

^

conftest.c:128:18: error: 'newvar' undeclared (first use in this function)

conftest.c:128:18: note: each undeclared identifier is reported only once for each function it appears in

conftest.c:138:3: error: 'for' loop initial declarations are only allowed in C99 mode

for (int i = 0; i < ia->datasize; ++i)

^

conftest.c:138:3: note: use option -std=c99 or -std=gnu99 to compile your code

configure:13201: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <stdarg.h>

| #include <stdbool.h>

| #include <stdlib.h>

| #include <wchar.h>

| #include <stdio.h>

|

| // Check varargs macros. These examples are taken from C99 6.10.3.5.

| #define debug(...) fprintf (stderr, __VA_ARGS__)

| #define showlist(...) puts (#__VA_ARGS__)

| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))

| static void

| test_varargs_macros (void)

| {

| int x = 1234;

| int y = 5678;

| debug ("Flag");

| debug ("X = %d\n", x);

| showlist (The first, second, and third items.);

| report (x>y, "x is %d but y is %d", x, y);

| }

|

| // Check long long types.

| #define BIG64 18446744073709551615ull

| #define BIG32 4294967295ul

| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)

| #if !BIG_OK

| your preprocessor is broken;

| #endif

| #if BIG_OK

| #else

| your preprocessor is broken;

| #endif

| static long long int bignum = -9223372036854775807LL;

| static unsigned long long int ubignum = BIG64;

|

| struct incomplete_array

| {

| int datasize;

| double data[];

| };

|

| struct named_init {

| int number;

| const wchar_t *name;

| double average;

| };

|

| typedef const char *ccp;

|

| static inline int

| test_restrict (ccp restrict text)

| {

| // See if C++-style comments work.

| // Iterate through items via the restricted pointer.

| // Also check for declarations in for loops.

| for (unsigned int i = 0; *(text+i) != '\0'; ++i)

| continue;

| return 0;

| }

|

| // Check varargs and va_copy.

| static void

| test_varargs (const char *format, ...)

| {

| va_list args;

| va_start (args, format);

| va_list args_copy;

| va_copy (args_copy, args);

|

| const char *str;

| int number;

| float fnumber;

|

| while (*format)

| {

| switch (*format++)

| {

| case 's': // string

| str = va_arg (args_copy, const char *);

| break;

| case 'd': // int

| number = va_arg (args_copy, int);

| break;

| case 'f': // float

| fnumber = va_arg (args_copy, double);

| break;

| default:

| break;

| }

| }

| va_end (args_copy);

| va_end (args);

| }

|

| int

| main ()

| {

|

| // Check bool.

| _Bool success = false;

|

| // Check restrict.

| if (test_restrict ("String literal") == 0)

| success = true;

| char *restrict newvar = "Another string";

|

| // Check varargs.

| test_varargs ("s, d' f .", "string", 65, 34.234);

| test_varargs_macros ();

|

| // Check flexible array members.

| struct incomplete_array *ia =

| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));

| ia->datasize = 10;

| for (int i = 0; i < ia->datasize; ++i)

| ia->data[i] = i * 1.234;

|

| // Check named initializers.

| struct named_init ni = {

| .number = 34,

| .name = L"Test wide string",

| .average = 543.34343,

| };

|

| ni.number = 58;

|

| int dynamic_array[ni.number];

| dynamic_array[ni.number - 1] = 543;

|

| // work around unused variable warnings

| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'

| || dynamic_array[ni.number - 1] != 543);

|

| ;

| return 0;

| }

configure:13201: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:13201: $? = 0

configure:13221: result: -std=gnu99

configure:13342: checking for C++ compiler version

configure:13351: g++ --version >&5

g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)

Copyright (C) 2015 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13362: $? = 0

configure:13351: g++ -v >&5

Using built-in specs.

COLLECT_GCC=g++

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC)

configure:13362: $? = 0

configure:13351: g++ -V >&5

g++: error: unrecognized command line option '-V'

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 4

configure:13351: g++ -qversion >&5

g++: error: unrecognized command line option '-qversion'

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 4

configure:13366: checking whether we are using the GNU C++ compiler

configure:13385: g++ -c conftest.cpp >&5

configure:13385: $? = 0

configure:13394: result: yes

configure:13403: checking whether g++ accepts -g

configure:13423: g++ -c -g conftest.cpp >&5

configure:13423: $? = 0

configure:13464: result: yes

configure:13489: checking dependency style of g++

configure:13600: result: gcc3

configure:13633: checking how to run the C++ preprocessor

configure:13660: g++ -E conftest.cpp

configure:13660: $? = 0

configure:13674: g++ -E conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:13674: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13699: result: g++ -E

configure:13719: g++ -E conftest.cpp

configure:13719: $? = 0

configure:13733: g++ -E conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:13733: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13895: checking for ld used by g++

configure:13962: result: /usr/bin/ld -m elf_x86_64

configure:13969: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld

configure:13984: result: yes

configure:14039: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15112: result: yes

configure:15148: g++ -c -g -O2 conftest.cpp >&5

configure:15151: $? = 0

configure:15632: checking for g++ option to produce PIC

configure:15639: result: -fPIC -DPIC

configure:15647: checking if g++ PIC flag -fPIC -DPIC works

configure:15665: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:15669: $? = 0

configure:15682: result: yes

configure:15705: checking if g++ static flag -static works

configure:15733: result: no

configure:15745: checking if g++ supports -c -o file.o

configure:15766: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5

configure:15770: $? = 0

configure:15792: result: yes

configure:15797: checking if g++ supports -c -o file.o

configure:15844: result: yes

configure:15874: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15914: result: yes

configure:16055: checking dynamic linker characteristics

configure:16800: result: GNU/Linux ld.so

configure:16865: checking how to hardcode library paths into programs

configure:16890: result: immediate

configure:16983: checking for g77

configure:17013: result: no

configure:16983: checking for xlf

configure:17013: result: no

configure:16983: checking for f77

configure:16999: found /opt/oracle/developerstudio12.5/bin/f77

configure:17010: result: f77

configure:17036: checking for Fortran 77 compiler version

configure:17045: f77 --version >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none --version

f90: Warning: Option --version passed to ld, if ld is invoked, ignored otherwise

usage: f90 [ options ] files. Use 'f90 -flags' for details

configure:17056: $? = 1

configure:17045: f77 -v >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -v

### f90: Note: NLSPATH = /opt/intel/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2018/gdb/intel64/share/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2018/gdb/intel64/share/locale/%l_%t/%N:/opt/oracle/developerstudio12.5/bin/../lib/locale/%L/LC_MESSAGES/%N.cat:/opt/oracle/developerstudio12.5/bin/../../lib/locale/%L/LC_MESSAGES/%N.cat

### command line files and options (expanded):

### -f77=%all -ftrap=%none -v

usage: f90 [ options ] files. Use 'f90 -flags' for details

configure:17056: $? = 1

configure:17045: f77 -V >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -V

f90: Studio 12.5 Fortran 95 8.8 Linux_i386 2016/05/31

configure:17056: $? = 0

configure:17045: f77 -qversion >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -qversion

f90: Warning: Option -qversion passed to ld, if ld is invoked, ignored otherwise

usage: f90 [ options ] files. Use 'f90 -flags' for details

configure:17056: $? = 1

configure:17065: checking whether we are using the GNU Fortran 77 compiler

configure:17078: f77 -c conftest.F >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -c conftest.F

/tmp/fpp.1565803281.9441.01.f:

MAIN main:

choke me

^

"conftest.F", Line = 3, Column = 16: ERROR: Unknown statement. Expected assignment statement but found "EOS" instead of "=" or "=>".

f90comp: 6 SOURCE LINES

f90comp: 1 ERRORS, 0 WARNINGS, 0 OTHER MESSAGES, 0 ANSI

configure:17078: $? = 1

configure: failed program was:

| program main

| #ifndef __GNUC__

| choke me

| #endif

|

| end

configure:17087: result: no

configure:17093: checking whether f77 accepts -g

configure:17104: f77 -c -g conftest.f >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -c -g conftest.f

conftest.f:

MAIN main:

configure:17104: $? = 0

configure:17112: result: yes

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -c -g conftest.f

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -o conftest -g conftest.f

configure:17241: checking if libtool supports shared libraries

configure:17243: result: yes

configure:17246: checking whether to build shared libraries

configure:17270: result: yes

configure:17273: checking whether to build static libraries

configure:17277: result: yes

configure:17629: checking for f77 option to produce PIC

configure:17636: result:

configure:17702: checking if f77 static flag works

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -o conftest -g conftest.f

conftest.f:

MAIN t:

configure:17730: result: yes

configure:17742: checking if f77 supports -c -o file.o

configure:17763: f77 -c -g -o out/conftest2.o conftest.f >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -c -g -o out/conftest2.o conftest.f

conftest.f:

t:

configure:17767: $? = 0

configure:17789: result: yes

configure:17794: checking if f77 supports -c -o file.o

configure:17841: result: yes

configure:17871: checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:19080: result: yes

configure:19221: checking dynamic linker characteristics

configure:19960: result: GNU/Linux ld.so

configure:20025: checking how to hardcode library paths into programs

configure:20050: result: immediate

configure:20083: checking for C/C++ restrict keyword

configure:20108: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:20108: $? = 0

configure:20116: result: __restrict

configure:20136: checking whether g++ supports C++11 features by default

configure:20430: g++ -c -g -O2 conftest.cpp >&5

conftest.cpp:36:2: error: #error "This is not a C++11 compiler"

#error "This is not a C++11 compiler"

^

configure:20430: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| /* end confdefs.h. */

|

|

| // If the compiler admits that it is not ready for C++11, why torture it?

| // Hopefully, this will speed up the test.

|

| #ifndef __cplusplus

|

| #error "This is not a C++ compiler"

|

| #elif __cplusplus < 201103L

|

| #error "This is not a C++11 compiler"

|

| #else

|

| namespace cxx11

| {

|

| namespace test_static_assert

| {

|

| template <typename T>

| struct check

| {

| static_assert(sizeof(int) <= sizeof(T), "not big enough");

| };

|

| }

|

| namespace test_final_override

| {

|

| struct Base

| {

| virtual void f() {}

| };

|

| struct Derived : public Base

| {

| virtual void f() override {}

| };

|

| }

|

| namespace test_double_right_angle_brackets

| {

|

| template < typename T >

| struct check {};

|

| typedef check<void> single_type;

| typedef check<check<void>> double_type;

| typedef check<check<check<void>>> triple_type;

| typedef check<check<check<check<void>>>> quadruple_type;

|

| }

|

| namespace test_decltype

| {

|

| int

| f()

| {

| int a = 1;

| decltype(a) b = 2;

| return a + b;

| }

|

| }

|

| namespace test_type_deduction

| {

|

| template < typename T1, typename T2 >

| struct is_same

| {

| static const bool value = false;

| };

|

| template < typename T >

| struct is_same<T, T>

| {

| static const bool value = true;

| };

|

| template < typename T1, typename T2 >

| auto

| add(T1 a1, T2 a2) -> decltype(a1 + a2)

| {

| return a1 + a2;

| }

|

| int

| test(const int c, volatile int v)

| {

| static_assert(is_same<int, decltype(0)>::value == true, "");

| static_assert(is_same<int, decltype(c)>::value == false, "");

| static_assert(is_same<int, decltype(v)>::value == false, "");

| auto ac = c;

| auto av = v;

| auto sumi = ac + av + 'x';

| auto sumf = ac + av + 1.0;

| static_assert(is_same<int, decltype(ac)>::value == true, "");

| static_assert(is_same<int, decltype(av)>::value == true, "");

| static_assert(is_same<int, decltype(sumi)>::value == true, "");

| static_assert(is_same<int, decltype(sumf)>::value == false, "");

| static_assert(is_same<int, decltype(add(c, v))>::value == true, "");

| return (sumf > 0.0) ? sumi : add(c, v);

| }

|

| }

|

| namespace test_noexcept

| {

|

| int f() { return 0; }

| int g() noexcept { return 0; }

|

| static_assert(noexcept(f()) == false, "");

| static_assert(noexcept(g()) == true, "");

|

| }

|

| namespace test_constexpr

| {

|

| template < typename CharT >

| unsigned long constexpr

| strlen_c_r(const CharT *const s, const unsigned long acc) noexcept

| {

| return *s ? strlen_c_r(s + 1, acc + 1) : acc;

| }

|

| template < typename CharT >

| unsigned long constexpr

| strlen_c(const CharT *const s) noexcept

| {

| return strlen_c_r(s, 0UL);

| }

|

| static_assert(strlen_c("") == 0UL, "");

| static_assert(strlen_c("1") == 1UL, "");

| static_assert(strlen_c("example") == 7UL, "");

| static_assert(strlen_c("another\0example") == 7UL, "");

|

| }

|

| namespace test_rvalue_references

| {

|

| template < int N >

| struct answer

| {

| static constexpr int value = N;

| };

|

| answer<1> f(int&) { return answer<1>(); }

| answer<2> f(const int&) { return answer<2>(); }

| answer<3> f(int&&) { return answer<3>(); }

|

| void

| test()

| {

| int i = 0;

| const int c = 0;

| static_assert(decltype(f(i))::value == 1, "");

| static_assert(decltype(f(c))::value == 2, "");

| static_assert(decltype(f(0))::value == 3, "");

| }

|

| }

|

| namespace test_uniform_initialization

| {

|

| struct test

| {

| static const int zero {};

| static const int one {1};

| };

|

| static_assert(test::zero == 0, "");

| static_assert(test::one == 1, "");

|

| }

|

| namespace test_lambdas

| {

|

| void

| test1()

| {

| auto lambda1 = [](){};

| auto lambda2 = lambda1;

| lambda1();

| lambda2();

| }

|

| int

| test2()

| {

| auto a = [](int i, int j){ return i + j; }(1, 2);

| auto b = []() -> int { return '0'; }();

| auto c = [=](){ return a + b; }();

| auto d = [&](){ return c; }();

| auto e = [a, &b](int x) mutable {

| const auto identity = [](int y){ return y; };

| for (auto i = 0; i < a; ++i)

| a += b--;

| return x + identity(a + b);

| }(0);

| return a + b + c + d + e;

| }

|

| int

| test3()

| {

| const auto nullary = [](){ return 0; };

| const auto unary = [](int x){ return x; };

| using nullary_t = decltype(nullary);

| using unary_t = decltype(unary);

| const auto higher1st = [](nullary_t f){ return f(); };

| const auto higher2nd = [unary](nullary_t f1){

| return [unary, f1](unary_t f2){ return f2(unary(f1())); };

| };

| return higher1st(nullary) + higher2nd(nullary)(unary);

| }

|

| }

|

| namespace test_variadic_templates

| {

|

| template <int...>

| struct sum;

|

| template <int N0, int... N1toN>

| struct sum<N0, N1toN...>

| {

| static constexpr auto value = N0 + sum<N1toN...>::value;

| };

|

| template <>

| struct sum<>

| {

| static constexpr auto value = 0;

| };

|

| static_assert(sum<>::value == 0, "");

| static_assert(sum<1>::value == 1, "");

| static_assert(sum<23>::value == 23, "");

| static_assert(sum<1, 2>::value == 3, "");

| static_assert(sum<5, 5, 11>::value == 21, "");

| static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");

|

| }

|

| // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae

| // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function

| // because of this.

| namespace test_template_alias_sfinae

| {

|

| struct foo {};

|

| template<typename T>

| using member = typename T::member_type;

|

| template<typename T>

| void func(...) {}

|

| template<typename T>

| void func(member<T>*) {}

|

| void test();

|

| void test() { func<foo>(0); }

|

| }

|

| } // namespace cxx11

|

| #endif // __cplusplus >= 201103L

|

|

|

configure:20437: result: no

configure:20447: checking whether g++ supports C++11 features with -std=gnu++11

configure:20743: g++ -std=gnu++11 -c -g -O2 conftest.cpp >&5

configure:20743: $? = 0

configure:20752: result: yes

configure:21122: checking for gcc -std=gnu99 option to support OpenMP

configure:21137: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

conftest.c:28:2: error: unknown type name 'choke'

choke me

^

In file included from conftest.c:30:0:

/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/omp.h:34:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'

typedef struct

^

configure:21137: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| /* end confdefs.h. */

|

| #ifndef _OPENMP

| choke me

| #endif

| #include <omp.h>

| int main () { return omp_get_num_threads (); }

|

configure:21155: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c >&5

configure:21155: $? = 0

configure:21169: result: -fopenmp

configure:21223: checking for ar

configure:21250: result: ar

configure:21407: checking for ld

configure:21434: result: /usr/bin/ld -m elf_x86_64

configure:21499: checking for nm

configure:21526: result: /usr/bin/nm -B

configure:21591: checking for ar

configure:21618: result: ar

configure:21683: checking for as

configure:21699: found /usr/bin/as

configure:21710: result: as

configure:21775: checking for dlltool

configure:21802: result: false

configure:21867: checking for objdump

configure:21894: result: objdump

configure:21959: checking for strip

configure:21986: result: strip

configure:22051: checking for ranlib

configure:22078: result: ranlib

configure:22114: checking for special C compiler options needed for large files

configure:22159: result: no

configure:22165: checking for _FILE_OFFSET_BITS value needed for large files

configure:22190: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22190: $? = 0

configure:22222: result: no

configure:22315: checking for stdlib.h

configure:22315: result: yes

configure:22315: checking for unistd.h

configure:22315: result: yes

configure:22315: checking for sys/param.h

configure:22315: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22315: $? = 0

configure:22315: result: yes

configure:22335: checking for getpagesize

configure:22335: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:22335: $? = 0

configure:22335: result: yes

configure:22344: checking for working mmap

configure:22491: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:22491: $? = 0

configure:22491: ./conftest

configure:22491: $? = 0

configure:22501: result: yes

configure:22512: checking for struct stat.st_blksize

configure:22512: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22512: $? = 0

configure:22512: result: yes

configure:22526: checking sys/resource.h usability

configure:22526: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22526: $? = 0

configure:22526: result: yes

configure:22526: checking sys/resource.h presence

configure:22526: gcc -E conftest.c

configure:22526: $? = 0

configure:22526: result: yes

configure:22526: checking for sys/resource.h

configure:22526: result: yes

configure:22538: checking sys/times.h usability

configure:22538: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22538: $? = 0

configure:22538: result: yes

configure:22538: checking sys/times.h presence

configure:22538: gcc -E conftest.c

configure:22538: $? = 0

configure:22538: result: yes

configure:22538: checking for sys/times.h

configure:22538: result: yes

configure:22550: checking malloc.h usability

configure:22550: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22550: $? = 0

configure:22550: result: yes

configure:22550: checking malloc.h presence

configure:22550: gcc -E conftest.c

configure:22550: $? = 0

configure:22550: result: yes

configure:22550: checking for malloc.h

configure:22550: result: yes

configure:22562: checking glob.h usability

configure:22562: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22562: $? = 0

configure:22562: result: yes

configure:22562: checking glob.h presence

configure:22562: gcc -E conftest.c

configure:22562: $? = 0

configure:22562: result: yes

configure:22562: checking for glob.h

configure:22562: result: yes

configure:22574: checking fnmatch.h usability

configure:22574: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22574: $? = 0

configure:22574: result: yes

configure:22574: checking fnmatch.h presence

configure:22574: gcc -E conftest.c

configure:22574: $? = 0

configure:22574: result: yes

configure:22574: checking for fnmatch.h

configure:22574: result: yes

configure:22586: checking wordexp.h usability

configure:22586: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22586: $? = 0

configure:22586: result: yes

configure:22586: checking wordexp.h presence

configure:22586: gcc -E conftest.c

configure:22586: $? = 0

configure:22586: result: yes

configure:22586: checking for wordexp.h

configure:22586: result: yes

configure:22598: checking execinfo.h usability

configure:22598: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22598: $? = 0

configure:22598: result: yes

configure:22598: checking execinfo.h presence

configure:22598: gcc -E conftest.c

configure:22598: $? = 0

configure:22598: result: yes

configure:22598: checking for execinfo.h

configure:22598: result: yes

configure:22612: checking for mallinfo

configure:22612: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:22612: $? = 0

configure:22612: result: yes

configure:22623: checking for backtrace

configure:22623: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:22623: $? = 0

configure:22623: result: yes

configure:22636: checking for getrlimit

configure:22636: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:22636: $? = 0

configure:22636: result: yes

configure:22711: checking for floor in -lm

configure:22736: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5

conftest.c:53:6: warning: conflicting types for built-in function 'floor' [enabled by default]

char floor ();

^

configure:22736: $? = 0

configure:22745: result: yes

configure:22759: checking for feenableexcept

configure:22759: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5

configure:22759: $? = 0

configure:22759: result: yes

configure:22769: checking for fenv_t.__control

configure:22769: gcc -std=gnu99 -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:54:12: error: 'fenv_t' has no member named '__control'

if (ac_aggr.__control)

^

configure:22769: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define C_VERSION "gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define F77_VERSION "NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -V"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22769: gcc -std=gnu99 -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:54:19: error: 'fenv_t' has no member named '__control'

if (sizeof ac_aggr.__control)

^

configure:22769: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define C_VERSION "gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define F77_VERSION "NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -V"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (sizeof ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22769: result: no

configure:22779: checking for fenv_t.__mxcsr

configure:22779: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:22779: $? = 0

configure:22779: result: yes

configure:22802: checking C preprocessor flags for Fortran calling convention cfortran.h

configure:22888: result: (probed)

configure:22923: checking if C externals constructed with cfortran.h work

configure:22983: gcc -std=gnu99 -c -g -O2 -I./src conftest.c >&5

In file included from conftest.c:49:0:

./src/cfortran.h:209:2: warning: #warning "Please specify the fortran compiler using -D flags. Try to guess the compiler used" [-Wcpp]

#warning "Please specify the fortran compiler using -D flags. Try to guess the compiler used"

^

configure:22983: $? = 0

configure:22984: Renaming C object file.

configure:22987: $? = 0

configure:23005: f77 -c -g conftest.f >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -c -g conftest.f

conftest.f:

cftstf:

configure:23005: $? = 0

configure:23006: Renaming Fortran object file.

configure:23009: $? = 0

configure:23065: f77 -o conftest -g conftest.f conftest_c.o conftest_f.o -lm >&5

NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -o conftest -g conftest.f conftest_c.o conftest_f.o -lm

conftest.f:

MAIN main:

configure:23065: $? = 0

configure:23065: ./conftest

configure:23065: $? = 0

configure:23099: result: yes

configure:23153: checking for DATA support

configure:23167: result:

configure:23319: checking if compiler needs -Werror to reject unknown flags

configure:23335: gcc -std=gnu99 -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5

gcc: error: unrecognized command line option '-Wunknown-warning-option'

gcc: error: unrecognized command line option '-Wsizeof-array-argument'

configure:23335: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define C_VERSION "gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define F77_VERSION "NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -V"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| int foo(void);

| int

| main ()

| {

| foo()

| ;

| return 0;

| }

configure:23340: result: no

configure:23406: checking for the pthreads library -lpthreads

configure:23444: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lpthreads -lm >&5

/usr/bin/ld: cannot find -lpthreads

collect2: error: ld returned 1 exit status

configure:23444: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.7.1"

| #define PACKAGE_STRING "cdo 1.9.7.1"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.7.1"

| #define PACKAGE "cdo"

| #define VERSION "1.9.7.1"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define CXX_VERSION "g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define C_VERSION "gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)"

| #define F77_VERSION "NOTICE: Invoking /opt/oracle/developerstudio12.5/bin/f90 -f77 -ftrap=%none -V"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1