CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.9.6, which was

generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --prefix=/home/wang.446/Downloads/temp CFLAGS=-fPIC -g -O2 --enable-netcdf4 --with-netcdf=/usr/lib64 --with-jasper=/usr/lib64 --with-hdf5=/usr/lib64 --with-grib_api=/usr/lib64

## --------- ##

## Platform. ##

## --------- ##

hostname = polarmet22

uname -m = x86_64

uname -r = 4.13.16-100.fc25.x86_64

uname -s = Linux

uname -v = #1 SMP Mon Nov 27 19:52:46 UTC 2017

/usr/bin/uname -p = x86_64

/bin/uname -X = unknown

/bin/arch = x86_64

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: .

PATH: /export/data1/wang.446/miniconda3/bin

PATH: /export/data1/wang.446/NCL/ncarg_662/bin

PATH: /export/data1/wang.446/mylib/bin

PATH: /home/wang.446

PATH: .

PATH: /export/data1/wang.446/miniconda3/bin

PATH: /export/data1/wang.446/NCL/ncarg_662/bin

PATH: /export/data1/wang.446/mylib/bin

PATH: /home/wang.446

PATH: /usr/local/bin

PATH: /usr/local/sbin

PATH: /usr/bin

PATH: /usr/sbin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2879: checking build system type

configure:2893: result: x86_64-pc-linux-gnu

configure:2913: checking host system type

configure:2926: result: x86_64-pc-linux-gnu

configure:2965: checking for a BSD-compatible install

configure:3033: result: /usr/bin/install -c

configure:3044: checking whether build environment is sane

configure:3099: result: yes

configure:3250: checking for a thread-safe mkdir -p

configure:3289: result: /usr/bin/mkdir -p

configure:3296: checking for gawk

configure:3312: found /usr/bin/gawk

configure:3323: result: gawk

configure:3334: checking whether make sets $(MAKE)

configure:3356: result: yes

configure:3385: checking whether make supports nested variables

configure:3402: result: yes

configure:3531: checking whether to enable maintainer-specific portions of Makefiles

configure:3540: result: no

configure:3559: checking whether make supports the include directive

configure:3574: make -f confmf.GNU && cat confinc.out

this is the am__doit target

configure:3577: $? = 0

configure:3596: result: yes (GNU style)

configure:3666: checking for gcc

configure:3693: result: gcc

configure:3922: checking for C compiler version

configure:3931: gcc --version >&5

gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3942: $? = 0

configure:3931: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/6.4.1/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --disable-libgcj --with-isl --enable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux

Thread model: posix

gcc version 6.4.1 20170727 (Red Hat 6.4.1-1) (GCC)

configure:3942: $? = 0

configure:3931: gcc -V >&5

gcc: error: unrecognized command line option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 1

configure:3931: gcc -qversion >&5

gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?

gcc: fatal error: no input files

compilation terminated.

configure:3942: $? = 1

configure:3962: checking whether the C compiler works

configure:3984: gcc -fPIC -g -O2 conftest.c >&5

configure:3988: $? = 0

configure:4036: result: yes

configure:4039: checking for C compiler default output file name

configure:4041: result: a.out

configure:4047: checking for suffix of executables

configure:4054: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:4058: $? = 0

configure:4080: result:

configure:4102: checking whether we are cross compiling

configure:4110: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:4114: $? = 0

configure:4121: ./conftest

configure:4125: $? = 0

configure:4140: result: no

configure:4145: checking for suffix of object files

configure:4167: gcc -c -fPIC -g -O2 conftest.c >&5

configure:4171: $? = 0

configure:4192: result: o

configure:4196: checking whether we are using the GNU C compiler

configure:4215: gcc -c -fPIC -g -O2 conftest.c >&5

configure:4215: $? = 0

configure:4224: result: yes

configure:4233: checking whether gcc accepts -g

configure:4253: gcc -c -g conftest.c >&5

configure:4253: $? = 0

configure:4294: result: yes

configure:4311: checking for gcc option to accept ISO C89

configure:4374: gcc -c -fPIC -g -O2 conftest.c >&5

configure:4374: $? = 0

configure:4387: result: none needed

configure:4412: checking whether gcc understands -c and -o together

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4434: gcc -c conftest.c -o conftest2.o

configure:4437: $? = 0

configure:4449: result: yes

configure:4468: checking dependency style of gcc

configure:4579: result: gcc3

configure:4644: checking for ar

configure:4660: found /usr/bin/ar

configure:4671: result: ar

configure:4697: checking the archiver (ar) interface

configure:4713: gcc -c -fPIC -g -O2 conftest.c >&5

configure:4713: $? = 0

configure:4715: ar cru libconftest.a conftest.o >&5

configure:4718: $? = 0

configure:4746: result: ar

configure:4767: setting up libtool

configure:4815: checking how to print strings

configure:4842: result: printf

configure:4863: checking for a sed that does not truncate output

configure:4927: result: /usr/bin/sed

configure:4945: checking for grep that handles long lines and -e

configure:5003: result: /usr/bin/grep

configure:5008: checking for egrep

configure:5070: result: /usr/bin/grep -E

configure:5075: checking for fgrep

configure:5137: result: /usr/bin/grep -F

configure:5172: checking for ld used by gcc

configure:5239: result: gfortran

configure:5246: checking if the linker (gfortran) is GNU ld

configure:5261: result: no

configure:5273: checking for BSD- or MS-compatible name lister (nm)

configure:5327: result: /usr/bin/nm -B

configure:5457: checking the name lister (/usr/bin/nm -B) interface

configure:5464: gcc -c -fPIC -g -O2 conftest.c >&5

configure:5467: /usr/bin/nm -B "conftest.o"

configure:5470: output

0000000000000000 B some_variable

configure:5477: result: BSD nm

configure:5480: checking whether ln -s works

configure:5484: result: yes

configure:5492: checking the maximum length of command line arguments

configure:5623: result: 1572864

configure:5671: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format

configure:5711: result: func_convert_file_noop

configure:5718: checking how to convert x86_64-pc-linux-gnu file names to toolchain format

configure:5738: result: func_convert_file_noop

configure:5745: checking for gfortran option to reload object files

configure:5752: result: -r

configure:5826: checking for objdump

configure:5842: found /usr/bin/objdump

configure:5853: result: objdump

configure:5885: checking how to recognize dependent libraries

configure:6085: result: pass_all

configure:6170: checking for dlltool

configure:6200: result: no

configure:6230: checking how to associate runtime and link libraries

configure:6257: result: printf %s\n

configure:6381: checking for archiver @FILE support

configure:6398: gcc -c -fPIC -g -O2 conftest.c >&5

configure:6398: $? = 0

configure:6401: ar cru libconftest.a @conftest.lst >&5

configure:6404: $? = 0

configure:6409: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:6412: $? = 1

configure:6424: result: @

configure:6482: checking for strip

configure:6498: found /usr/bin/strip

configure:6509: result: strip

configure:6581: checking for ranlib

configure:6597: found /usr/bin/ranlib

configure:6608: result: ranlib

configure:6710: checking command to parse /usr/bin/nm -B output from gcc object

configure:6863: gcc -c -fPIC -g -O2 conftest.c >&5

configure:6866: $? = 0

configure:6870: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6873: $? = 0

configure:6939: gcc -o conftest -fPIC -g -O2 conftest.c conftstm.o >&5

configure:6942: $? = 0

configure:6980: result: ok

configure:7027: checking for sysroot

configure:7057: result: no

configure:7064: checking for a working dd

configure:7102: result: /usr/bin/dd

configure:7106: checking how to truncate binary pipes

configure:7121: result: /usr/bin/dd bs=4096 count=1

configure:7257: gcc -c -fPIC -g -O2 conftest.c >&5

configure:7260: $? = 0

configure:7450: checking for mt

configure:7480: result: no

configure:7500: checking if : is a manifest tool

configure:7506: : '-?'

configure:7514: result: no

configure:8191: checking how to run the C preprocessor

configure:8222: gcc -E conftest.c

configure:8222: $? = 0

configure:8236: gcc -E conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:8236: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8261: result: gcc -E

configure:8281: gcc -E conftest.c

configure:8281: $? = 0

configure:8295: gcc -E conftest.c

conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:8295: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:8324: checking for ANSI C header files

configure:8344: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8344: $? = 0

configure:8417: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:8417: $? = 0

configure:8417: ./conftest

configure:8417: $? = 0

configure:8428: result: yes

configure:8441: checking for sys/types.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for sys/stat.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdlib.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for string.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for memory.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for strings.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for inttypes.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for stdint.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8441: checking for unistd.h

configure:8441: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8441: $? = 0

configure:8441: result: yes

configure:8455: checking for dlfcn.h

configure:8455: gcc -c -fPIC -g -O2 conftest.c >&5

configure:8455: $? = 0

configure:8455: result: yes

configure:8711: checking for objdir

configure:8726: result: .libs

configure:8990: checking if gcc supports -fno-rtti -fno-exceptions

configure:9008: gcc -c -fPIC -g -O2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C

configure:9012: $? = 0

configure:9025: result: no

configure:9383: checking for gcc option to produce PIC

configure:9390: result: -fPIC -DPIC

configure:9398: checking if gcc PIC flag -fPIC -DPIC works

configure:9416: gcc -c -fPIC -g -O2 -fPIC -DPIC -DPIC conftest.c >&5

configure:9420: $? = 0

configure:9433: result: yes

configure:9462: checking if gcc static flag -static works

configure:9490: result: no

configure:9505: checking if gcc supports -c -o file.o

configure:9526: gcc -c -fPIC -g -O2 -o out/conftest2.o conftest.c >&5

configure:9530: $? = 0

configure:9552: result: yes

configure:9560: checking if gcc supports -c -o file.o

configure:9607: result: yes

configure:9640: checking whether the gcc linker (gfortran -m elf_x86_64) supports shared libraries

configure:10899: result: yes

configure:11139: checking dynamic linker characteristics

configure:11720: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:11720: $? = 0

configure:11957: result: GNU/Linux ld.so

configure:12079: checking how to hardcode library paths into programs

configure:12104: result: unsupported

configure:12652: checking whether stripping libraries is possible

configure:12657: result: yes

configure:12692: checking if libtool supports shared libraries

configure:12694: result: yes

configure:12697: checking whether to build shared libraries

configure:12722: result: yes

configure:12725: checking whether to build static libraries

configure:12729: result: yes

configure:12814: checking for bash

configure:12844: result: /bin/sh

configure:12911: checking for gcc

configure:12938: result: gcc

configure:13003: checking for g++

configure:13030: result: g++

configure:13052: checking for gcc option to accept ISO C99

configure:13201: gcc -c -fPIC -g -O2 conftest.c >&5

configure:13201: $? = 0

configure:13214: result: none needed

configure:13342: checking for C++ compiler version

configure:13351: g++ --version >&5

g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13362: $? = 0

configure:13351: g++ -v >&5

Using built-in specs.

COLLECT_GCC=g++

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/6.4.1/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --disable-libgcj --with-isl --enable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux

Thread model: posix

gcc version 6.4.1 20170727 (Red Hat 6.4.1-1) (GCC)

configure:13362: $? = 0

configure:13351: g++ -V >&5

g++: error: unrecognized command line option '-V'

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 1

configure:13351: g++ -qversion >&5

g++: error: unrecognized command line option '-qversion'; did you mean '--version'?

g++: fatal error: no input files

compilation terminated.

configure:13362: $? = 1

configure:13366: checking whether we are using the GNU C++ compiler

configure:13385: g++ -c conftest.cpp >&5

configure:13385: $? = 0

configure:13394: result: yes

configure:13403: checking whether g++ accepts -g

configure:13423: g++ -c -g conftest.cpp >&5

configure:13423: $? = 0

configure:13464: result: yes

configure:13489: checking dependency style of g++

configure:13600: result: gcc3

configure:13633: checking how to run the C++ preprocessor

configure:13660: g++ -E conftest.cpp

configure:13660: $? = 0

configure:13674: g++ -E conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:13674: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13699: result: g++ -E

configure:13719: g++ -E conftest.cpp

configure:13719: $? = 0

configure:13733: g++ -E conftest.cpp

conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory

#include <ac_nonexistent.h>

^

compilation terminated.

configure:13733: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13895: checking for ld used by g++

configure:13962: result: gfortran -m elf_x86_64

configure:13969: checking if the linker (gfortran -m elf_x86_64) is GNU ld

configure:13984: result: no

configure:14039: checking whether the g++ linker (gfortran -m elf_x86_64) supports shared libraries

configure:15112: result: yes

configure:15148: g++ -c -g -O2 conftest.cpp >&5

configure:15151: $? = 0

configure:15632: checking for g++ option to produce PIC

configure:15639: result: -fPIC -DPIC

configure:15647: checking if g++ PIC flag -fPIC -DPIC works

configure:15665: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:15669: $? = 0

configure:15682: result: yes

configure:15705: checking if g++ static flag -static works

configure:15733: result: no

configure:15745: checking if g++ supports -c -o file.o

configure:15766: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5

configure:15770: $? = 0

configure:15792: result: yes

configure:15797: checking if g++ supports -c -o file.o

configure:15844: result: yes

configure:15874: checking whether the g++ linker (gfortran -m elf_x86_64) supports shared libraries

configure:15914: result: yes

configure:16055: checking dynamic linker characteristics

configure:16800: result: GNU/Linux ld.so

configure:16865: checking how to hardcode library paths into programs

configure:16890: result: unsupported

configure:17036: checking for Fortran 77 compiler version

configure:17045: gfortran --version >&5

GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:17056: $? = 0

configure:17045: gfortran -v >&5

Using built-in specs.

COLLECT_GCC=gfortran

COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/6.4.1/lto-wrapper

Target: x86_64-redhat-linux

Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --disable-libgcj --with-isl --enable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux

Thread model: posix

gcc version 6.4.1 20170727 (Red Hat 6.4.1-1) (GCC)

configure:17056: $? = 0

configure:17045: gfortran -V >&5

gfortran: error: unrecognized command line option '-V'

gfortran: fatal error: no input files

compilation terminated.

configure:17056: $? = 1

configure:17045: gfortran -qversion >&5

gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'?

gfortran: fatal error: no input files

compilation terminated.

configure:17056: $? = 1

configure:17065: checking whether we are using the GNU Fortran 77 compiler

configure:17078: gfortran -c -m64 conftest.F >&5

configure:17078: $? = 0

configure:17087: result: yes

configure:17093: checking whether gfortran accepts -g

configure:17104: gfortran -c -g conftest.f >&5

configure:17104: $? = 0

configure:17112: result: yes

configure:17241: checking if libtool supports shared libraries

configure:17243: result: yes

configure:17246: checking whether to build shared libraries

configure:17270: result: yes

configure:17273: checking whether to build static libraries

configure:17277: result: yes

configure:17629: checking for gfortran option to produce PIC

configure:17636: result: -fPIC

configure:17644: checking if gfortran PIC flag -fPIC works

configure:17662: gfortran -c -m64 -fPIC conftest.f >&5

configure:17666: $? = 0

configure:17679: result: yes

configure:17702: checking if gfortran static flag -static works

configure:17730: result: no

configure:17742: checking if gfortran supports -c -o file.o

configure:17763: gfortran -c -m64 -o out/conftest2.o conftest.f >&5

configure:17767: $? = 0

configure:17789: result: yes

configure:17794: checking if gfortran supports -c -o file.o

configure:17841: result: yes

configure:17871: checking whether the gfortran linker (gfortran -m elf_x86_64) supports shared libraries

configure:19080: result: yes

configure:19221: checking dynamic linker characteristics

configure:19960: result: GNU/Linux ld.so

configure:20025: checking how to hardcode library paths into programs

configure:20050: result: unsupported

configure:20083: checking for C/C++ restrict keyword

configure:20108: gcc -c -fPIC -g -O2 conftest.c >&5

configure:20108: $? = 0

configure:20116: result: __restrict

configure:20136: checking whether g++ supports C++11 features by default

configure:20430: g++ -c -g -O2 conftest.cpp >&5

configure:20430: $? = 0

configure:20437: result: yes

configure:21122: checking for gcc option to support OpenMP

configure:21137: gcc -o conftest -fPIC -g -O2 conftest.c >&5

conftest.c:28:2: error: unknown type name 'choke'

choke me

^~~~~

In file included from conftest.c:30:0:

/usr/lib/gcc/x86_64-redhat-linux/6.4.1/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'

typedef struct

^~~~~~~

configure:21137: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| /* end confdefs.h. */

|

| #ifndef _OPENMP

| choke me

| #endif

| #include <omp.h>

| int main () { return omp_get_num_threads (); }

|

configure:21155: gcc -o conftest -fPIC -g -O2 -fopenmp conftest.c >&5

configure:21155: $? = 0

configure:21169: result: -fopenmp

configure:21223: checking for ar

configure:21250: result: ar

configure:21407: checking for ld

configure:21434: result: gfortran -m elf_x86_64

configure:21499: checking for nm

configure:21526: result: /usr/bin/nm -B

configure:21591: checking for ar

configure:21618: result: ar

configure:21683: checking for as

configure:21699: found /usr/bin/as

configure:21710: result: as

configure:21775: checking for dlltool

configure:21802: result: false

configure:21867: checking for objdump

configure:21894: result: objdump

configure:21959: checking for strip

configure:21986: result: strip

configure:22051: checking for ranlib

configure:22078: result: ranlib

configure:22114: checking for special C compiler options needed for large files

configure:22159: result: no

configure:22165: checking for _FILE_OFFSET_BITS value needed for large files

configure:22190: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22190: $? = 0

configure:22222: result: no

configure:22315: checking for stdlib.h

configure:22315: result: yes

configure:22315: checking for unistd.h

configure:22315: result: yes

configure:22315: checking for sys/param.h

configure:22315: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22315: $? = 0

configure:22315: result: yes

configure:22335: checking for getpagesize

configure:22335: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22335: $? = 0

configure:22335: result: yes

configure:22344: checking for working mmap

configure:22491: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22491: $? = 0

configure:22491: ./conftest

configure:22491: $? = 0

configure:22501: result: yes

configure:22512: checking for malloc in -lmalloc

configure:22537: gcc -o conftest -fPIC -g -O2 conftest.c -lmalloc >&5

conftest.c:38:6: warning: conflicting types for built-in function 'malloc'

char malloc ();

^~~~~~

/usr/bin/ld: cannot find -lmalloc

collect2: error: ld returned 1 exit status

configure:22537: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char malloc ();

| int

| main ()

| {

| return malloc ();

| ;

| return 0;

| }

configure:22546: result: no

configure:22559: checking for struct stat.st_blksize

configure:22559: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22559: $? = 0

configure:22559: result: yes

configure:22573: checking sys/resource.h usability

configure:22573: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22573: $? = 0

configure:22573: result: yes

configure:22573: checking sys/resource.h presence

configure:22573: gcc -E conftest.c

configure:22573: $? = 0

configure:22573: result: yes

configure:22573: checking for sys/resource.h

configure:22573: result: yes

configure:22585: checking sys/times.h usability

configure:22585: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22585: $? = 0

configure:22585: result: yes

configure:22585: checking sys/times.h presence

configure:22585: gcc -E conftest.c

configure:22585: $? = 0

configure:22585: result: yes

configure:22585: checking for sys/times.h

configure:22585: result: yes

configure:22597: checking malloc.h usability

configure:22597: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22597: $? = 0

configure:22597: result: yes

configure:22597: checking malloc.h presence

configure:22597: gcc -E conftest.c

configure:22597: $? = 0

configure:22597: result: yes

configure:22597: checking for malloc.h

configure:22597: result: yes

configure:22609: checking glob.h usability

configure:22609: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22609: $? = 0

configure:22609: result: yes

configure:22609: checking glob.h presence

configure:22609: gcc -E conftest.c

configure:22609: $? = 0

configure:22609: result: yes

configure:22609: checking for glob.h

configure:22609: result: yes

configure:22621: checking fnmatch.h usability

configure:22621: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22621: $? = 0

configure:22621: result: yes

configure:22621: checking fnmatch.h presence

configure:22621: gcc -E conftest.c

configure:22621: $? = 0

configure:22621: result: yes

configure:22621: checking for fnmatch.h

configure:22621: result: yes

configure:22633: checking wordexp.h usability

configure:22633: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22633: $? = 0

configure:22633: result: yes

configure:22633: checking wordexp.h presence

configure:22633: gcc -E conftest.c

configure:22633: $? = 0

configure:22633: result: yes

configure:22633: checking for wordexp.h

configure:22633: result: yes

configure:22645: checking execinfo.h usability

configure:22645: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22645: $? = 0

configure:22645: result: yes

configure:22645: checking execinfo.h presence

configure:22645: gcc -E conftest.c

configure:22645: $? = 0

configure:22645: result: yes

configure:22645: checking for execinfo.h

configure:22645: result: yes

configure:22659: checking for mallinfo

configure:22659: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22659: $? = 0

configure:22659: result: yes

configure:22670: checking for backtrace

configure:22670: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22670: $? = 0

configure:22670: result: yes

configure:22683: checking for getrlimit

configure:22683: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22683: $? = 0

configure:22683: result: yes

configure:22694: checking for gethostname

configure:22694: gcc -o conftest -fPIC -g -O2 conftest.c >&5

configure:22694: $? = 0

configure:22694: result: yes

configure:22769: checking for floor in -lm

configure:22794: gcc -o conftest -fPIC -g -O2 conftest.c -lm >&5

conftest.c:54:6: warning: conflicting types for built-in function 'floor'

char floor ();

^~~~~

configure:22794: $? = 0

configure:22803: result: yes

configure:22816: checking whether isnan is declared

configure:22816: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22816: $? = 0

configure:22816: result: yes

configure:22831: checking for sqrtl

configure:22831: gcc -o conftest -fPIC -g -O2 conftest.c -lm >&5

conftest.c:72:6: warning: conflicting types for built-in function 'sqrtl'

char sqrtl ();

^~~~~

configure:22831: $? = 0

configure:22831: result: yes

configure:22842: checking for feenableexcept

configure:22842: gcc -o conftest -fPIC -g -O2 conftest.c -lm >&5

configure:22842: $? = 0

configure:22842: result: yes

configure:22852: checking for fenv_t.__control

configure:22852: gcc -c -fPIC -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:57:12: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?

if (ac_aggr.__control)

^

configure:22852: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22852: gcc -c -fPIC -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:57:19: error: 'fenv_t {aka struct <anonymous>}' has no member named '__control'; did you mean '__control_word'?

if (sizeof ac_aggr.__control)

^

configure:22852: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (sizeof ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:22852: result: no

configure:22862: checking for fenv_t.__mxcsr

configure:22862: gcc -c -fPIC -g -O2 conftest.c >&5

configure:22862: $? = 0

configure:22862: result: yes

configure:22885: checking C preprocessor flags for Fortran calling convention cfortran.h

configure:22971: result: -DgFortran (probed)

configure:23006: checking if C externals constructed with cfortran.h work

configure:23066: gcc -c -fPIC -g -O2 -I./src -DgFortran conftest.c >&5

configure:23066: $? = 0

configure:23067: Renaming C object file.

configure:23070: $? = 0

configure:23088: gfortran -c -m64 conftest.f >&5

configure:23088: $? = 0

configure:23089: Renaming Fortran object file.

configure:23092: $? = 0

configure:23148: gfortran -o conftest -m64 conftest.f conftest_c.o conftest_f.o -lm >&5

configure:23148: $? = 0

configure:23148: ./conftest

configure:23148: $? = 0

configure:23182: result: yes

configure:23236: checking for DATA support

configure:23250: result:

configure:23402: checking if compiler needs -Werror to reject unknown flags

configure:23418: gcc -c -fPIC -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -DgFortran conftest.c >&5

gcc: error: unrecognized command line option '-Wunknown-warning-option'; did you mean '-Wno-warning-token'?

configure:23418: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| int foo(void);

| int

| main ()

| {

| foo()

| ;

| return 0;

| }

configure:23423: result: no

configure:23489: checking for the pthreads library -lpthreads

configure:23527: gcc -o conftest -fPIC -g -O2 -fopenmp -DgFortran conftest.c -lpthreads -lm >&5

/usr/bin/ld: cannot find -lpthreads

collect2: error: ld returned 1 exit status

configure:23527: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void *a) { a = 0; }

| static void *start_routine(void *a) { return a; }

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th, 0, start_routine, 0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0) /* ; */

| ;

| return 0;

| }

configure:23536: result: no

configure:23434: checking whether pthreads work without any flags

configure:23527: gcc -o conftest -fPIC -g -O2 -fopenmp -DgFortran conftest.c -lm >&5

configure:23527: $? = 0

configure:23536: result: yes

configure:23555: checking for joinable pthread attribute

configure:23570: gcc -o conftest -fPIC -g -O2 -fopenmp -DgFortran conftest.c -lm >&5

configure:23570: $? = 0

configure:23576: result: PTHREAD_CREATE_JOINABLE

configure:23586: checking if more special flags are required for pthreads

configure:23601: result: no

configure:23607: checking for PTHREAD_PRIO_INHERIT

configure:23624: gcc -o conftest -fPIC -g -O2 -fopenmp -DgFortran conftest.c -lm >&5

configure:23624: $? = 0

configure:23633: result: yes

configure:23982: checking for szlib library

configure:23984: result: suppressed

configure:24150: checking hdf5.h usability

configure:24150: gcc -c -fPIC -g -O2 -fopenmp -I/usr/lib64/include -DgFortran conftest.c >&5

configure:24150: $? = 0

configure:24150: result: yes

configure:24150: checking hdf5.h presence

configure:24150: gcc -E -I/usr/lib64/include -DgFortran conftest.c

configure:24150: $? = 0

configure:24150: result: yes

configure:24150: checking for hdf5.h

configure:24150: result: yes

configure:24160: checking for library containing H5Fopen

configure:24191: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -DgFortran -L/usr/lib64/lib conftest.c -lm >&5

/tmp/ccXTfazw.o: In function `main':

/home/wang.446/Downloads/temp/cdo-1.9.6/conftest.c:68: undefined reference to `H5Fopen'

collect2: error: ld returned 1 exit status

configure:24191: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_HDF5_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:24191: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -DgFortran -L/usr/lib64/lib conftest.c -lhdf5 -lm >&5

configure:24191: $? = 0

configure:24208: result: -lhdf5

configure:24220: checking for library containing H5DSis_scale

configure:24251: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -DgFortran -L/usr/lib64/lib conftest.c -lhdf5 -lm >&5

/tmp/ccnIy1bH.o: In function `main':

/home/wang.446/Downloads/temp/cdo-1.9.6/conftest.c:69: undefined reference to `H5DSis_scale'

collect2: error: ld returned 1 exit status

configure:24251: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5DSis_scale ();

| int

| main ()

| {

| return H5DSis_scale ();

| ;

| return 0;

| }

configure:24251: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -DgFortran -L/usr/lib64/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5

configure:24251: $? = 0

configure:24268: result: -lhdf5_hl

configure:24496: checking netcdf.h usability

configure:24496: gcc -c -fPIC -g -O2 -fopenmp -I/usr/lib64/include -I/usr/lib64/include -DgFortran conftest.c >&5

configure:24496: $? = 0

configure:24496: result: yes

configure:24496: checking netcdf.h presence

configure:24496: gcc -E -I/usr/lib64/include -I/usr/lib64/include -DgFortran conftest.c

configure:24496: $? = 0

configure:24496: result: yes

configure:24496: checking for netcdf.h

configure:24496: result: yes

configure:24506: checking for library containing nc_open

configure:24537: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -I/usr/lib64/include -DgFortran -L/usr/lib64/lib -L/usr/lib64/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5

/tmp/ccfDwK3P.o: In function `main':

/home/wang.446/Downloads/temp/cdo-1.9.6/conftest.c:70: undefined reference to `nc_open'

collect2: error: ld returned 1 exit status

configure:24537: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char nc_open ();

| int

| main ()

| {

| return nc_open ();

| ;

| return 0;

| }

configure:24537: gcc -o conftest -fPIC -g -O2 -fopenmp -I/usr/lib64/include -I/usr/lib64/include -DgFortran -L/usr/lib64/lib -L/usr/lib64/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5

configure:24537: $? = 0

configure:24554: result: -lnetcdf

configure:24569: checking nc-config script

configure:24573: checking for nc-config

configure:24603: result: no

configure:24661: result: Could not find nc-config! go on with default configuration

configure:24935: checking for the UDUNITS2 library

configure:24937: result: suppressed

configure:25083: checking for uuid/uuid.h extra include path

configure:25103: gcc -c -fPIC -g -O2 -fopenmp -I/usr/lib64/include -I/usr/lib64/include -DgFortran conftest.c >&5

conftest.c:93:23: fatal error: uuid/uuid.h: No such file or directory

#include <uuid/uuid.h>

^

compilation terminated.

configure:25103: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1

| #define HAVE_LIBNETCDF 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| #include <uuid/uuid.h>

configure:25137: result: not found

configure:25332: checking for uuid.h extra include path

configure:25354: gcc -c -fPIC -g -O2 -fopenmp -I/usr/lib64/include -I/usr/lib64/include -DgFortran conftest.c >&5

conftest.c:60:18: fatal error: uuid.h: No such file or directory

#include <uuid.h>

^

compilation terminated.

configure:25354: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.9.6"

| #define PACKAGE_STRING "cdo 1.9.6"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.9.6"

| #define PACKAGE "cdo"

| #define VERSION "1.9.6"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_CXX11 1

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define CXX_VERSION "g++ (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define C_VERSION "gcc (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define F77_VERSION "GNU Fortran (GCC) 6.4.1 20170727 (Red Hat 6.4.1-1)"

| #define SYSTEM_TYPE "x86_64-pc-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define HAVE_CF_INTERFACE 1

| #define ENABLE_DATA 1

| #define HAVE_PTHREAD_PRIO_INHERIT 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| #define HAVE_NETCDF_H 1