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problem with installing cdo ยป test-suite.log

Ludovica Beltrame, 2018-05-23 12:10

 
=======================================
cdo 1.9.5rc1: test/test-suite.log
=======================================

# TOTAL: 384
# PASS: 383
# SKIP: 0
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0

.. contents:: :depth: 2

FAIL: tsformat
==============

1..8
Running test: 1 - chaining set 1 with SERVICE
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 7448KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7756KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7728KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7764KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7736KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7736KB]
../src/cdo --seperateDebugFromLog tsformat_srv.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(srv) thread1_res
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 7428KB]
ok 1 - chaining set 1 with SERVICE
PASS: tsformat.test 1 - chaining set 1 with SERVICE
Running test: 2 - chaining set 1 with EXTRA
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 7468KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7756KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7760KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7744KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7748KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7760KB]
../src/cdo --seperateDebugFromLog tsformat_ext.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(ext) thread2_res
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 7444KB]
ok 2 - chaining set 1 with EXTRA
PASS: tsformat.test 2 - chaining set 1 with EXTRA
Running test: 3 - chaining set 1 with IEG
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 7532KB]
../src/cdo --seperateDebugFromLog tsformat_ieg.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(ieg) thread3_res
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7776KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7744KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7792KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7768KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 7764KB]
iegDefLevel : Changed zaxis type from generic to pressure
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 7420KB]
ok 3 - chaining set 1 with IEG
PASS: tsformat.test 3 - chaining set 1 with IEG
Running test: 4 - chaining set 1 with GRIB
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 7576KB]
../src/cdo --seperateDebugFromLog tsformat_grb.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(grb) thread4_res
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 8012KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 8032KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 8036KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 8024KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 8008KB]
cgribexDefLevel : Changed zaxis type from generic to pressure
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 7652KB]
ok 4 - chaining set 1 with GRIB
PASS: tsformat.test 4 - chaining set 1 with GRIB
Running test: 5 - chaining set 1 with GRIB_API
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.03s 15MB]
../src/cdo --seperateDebugFromLog tsformat_grb2.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(grb2) thread5_res
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.16s 19MB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.16s 19MB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.17s 19MB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.16s 19MB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.17s 19MB]
gribapiDefLevel : Changed zaxis type from generic to pressure
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.09s 18MB]
ok 5 - chaining set 1 with GRIB_API
PASS: tsformat.test 5 - chaining set 1 with GRIB_API
Running test: 6 - chaining set 1 with netCDF
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 9268KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9744KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9692KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9732KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9736KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9736KB]
../src/cdo --seperateDebugFromLog tsformat_nc.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(nc) thread6_res
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 9224KB]
ok 6 - chaining set 1 with netCDF
PASS: tsformat.test 6 - chaining set 1 with netCDF
Running test: 7 - chaining set 1 with netCDF2
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.00s 9292KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9664KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9744KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9676KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.00s 9732KB]
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(3) select: Processed 1440 values from 3 variables over 5 timesteps
cdo(2) timmean: Processed 1440 values from 1 variable over 5 timesteps
cdo fldmin: Processed 288 values from 1 variable over 1 timestep [0.01s 9668KB]
../src/cdo --seperateDebugFromLog tsformat_nc2.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(nc2) thread7_res
cdo(2) selcode: Process started
cdo(2) selcode: Processed 4 values from 3 variables over 1 timestep
cdo diff: Processed 8 values from 2 variables over 1 timestep [0.00s 9228KB]
ok 7 - chaining set 1 with netCDF2
PASS: tsformat.test 7 - chaining set 1 with netCDF2
Running test: 8 - chaining set 1 with netCDF4
cdo setgrid: Processed 2160 values from 3 variables over 5 timesteps [0.01s 11MB]
cdo(2) timmean: Process started
cdo(3) select: Process started
./tsformat.test: line 55: 81356 Bus error: 10 $CDOCOMMAND
cdo(2) timmean: Process started
cdo(3) select: Process started
cdo(81358,0x7fff79f7c000) malloc: *** error for object 0x7fbb71c44e78: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
./tsformat.test: line 55: 81358 Abort trap: 6 $CDOCOMMAND
cdo(2) timmean: Process started
cdo(3) select: Process started
./tsformat.test: line 55: 81359 Segmentation fault: 11 $CDOCOMMAND
cdo(2) timmean: Process started
cdo(3) select: Process started
./tsformat.test: line 55: 81360 Segmentation fault: 11 $CDOCOMMAND
cdo(2) timmean: Process started
cdo(3) select: Process started
./tsformat.test: line 55: 81361 Segmentation fault: 11 $CDOCOMMAND
../src/cdo --seperateDebugFromLog tsformat_nc4.debug -fldmin -timmean -select,code=130 ../test/data/pl_data(nc4) thread8_res

cdo (Abort): Input file thread8_res of process diff does not exists
not ok 8 - chaining set 1 with netCDF4
FAIL: tsformat.test 8 - chaining set 1 with netCDF4

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