CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.8.2, which was

generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --prefix=/usr/local/cdo-1.8.2 --with-szlib=/usr/local/szip-2.1 --with-hdf5=/usr/local/hdf5-1.8.9 --with-netcdf=/usr/local/netcdf-4.1.3 --with-proj=/usr/local/proj-4.9.2 --with-grib_api=/usr/local/grib_api-1.14.7 --with-jasper=/usr/local/jasper-1.900.1 --enable-cdi-lib

## --------- ##

## Platform. ##

## --------- ##

hostname = eurus-wind

uname -m = x86_64

uname -r = 2.6.32-696.10.1.el6.x86_64

uname -s = Linux

uname -v = #1 SMP Tue Aug 22 18:51:35 UTC 2017

/usr/bin/uname -p = unknown

/bin/uname -X = unknown

/bin/arch = x86_64

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /usr/local/grib_api-1.14.7/bin

PATH: /usr/local/wgrib

PATH: /usr/local/netcdf-4.1.3/bin

PATH: /usr/local/hdf5-1.8.9/bin

PATH: /usr/local/szip-2.1/bin

PATH: /usr/local/jpeg-8c/bin

PATH: /usr/local/libpng-1.2.50/bin

PATH: /usr/local/zlib-1.2.7/bin

PATH: /usr/local/jasper-1.900.1/bin

PATH: /usr/local/openmpi-1.2.7/bin

PATH: /opt/intel/compilers_and_libraries_2017.4.196/linux/bin/intel64

PATH: /opt/intel/debugger_2017/gdb/intel64_mic/bin

PATH: /usr/local/Python-3.4.3/bin

PATH: /usr/lib64/qt-3.3/bin

PATH: /opt/openmpi-2.1.1_intel-17.0.4.196/bin

PATH: /usr/kerberos/sbin

PATH: /usr/kerberos/bin

PATH: /usr/StorMan/pegasus/bin

PATH: /usr/StorMan/ssl/bin

PATH: /usr/local/bin

PATH: /bin

PATH: /usr/bin

PATH: /usr/local/sbin

PATH: /usr/sbin

PATH: /sbin

PATH: /home/wrf/bin

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2608: checking build system type

configure:2622: result: x86_64-unknown-linux-gnu

configure:2642: checking host system type

configure:2655: result: x86_64-unknown-linux-gnu

configure:2694: checking for a BSD-compatible install

configure:2762: result: /usr/bin/install -c

configure:2773: checking whether build environment is sane

configure:2828: result: yes

configure:2979: checking for a thread-safe mkdir -p

configure:3018: result: /bin/mkdir -p

configure:3025: checking for gawk

configure:3041: found /bin/gawk

configure:3052: result: gawk

configure:3063: checking whether make sets $(MAKE)

configure:3085: result: yes

configure:3114: checking whether make supports nested variables

configure:3131: result: yes

configure:3259: checking whether to enable maintainer-specific portions of Makefiles

configure:3268: result: no

configure:3295: checking for style of include used by make

configure:3323: result: GNU

configure:3394: checking for gcc

configure:3410: found /usr/bin/gcc

configure:3421: result: gcc

configure:3650: checking for C compiler version

configure:3659: gcc --version >&5

gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)

Copyright (C) 2010 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3670: $? = 0

configure:3659: gcc -v >&5

Using built-in specs.

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC)

configure:3670: $? = 0

configure:3659: gcc -V >&5

gcc: '-V' option must have argument

configure:3670: $? = 1

configure:3659: gcc -qversion >&5

gcc: unrecognized option '-qversion'

gcc: no input files

configure:3670: $? = 1

configure:3690: checking whether the C compiler works

configure:3712: gcc conftest.c >&5

configure:3716: $? = 0

configure:3764: result: yes

configure:3767: checking for C compiler default output file name

configure:3769: result: a.out

configure:3775: checking for suffix of executables

configure:3782: gcc -o conftest conftest.c >&5

configure:3786: $? = 0

configure:3808: result:

configure:3830: checking whether we are cross compiling

configure:3838: gcc -o conftest conftest.c >&5

configure:3842: $? = 0

configure:3849: ./conftest

configure:3853: $? = 0

configure:3868: result: no

configure:3873: checking for suffix of object files

configure:3895: gcc -c conftest.c >&5

configure:3899: $? = 0

configure:3920: result: o

configure:3924: checking whether we are using the GNU C compiler

configure:3943: gcc -c conftest.c >&5

configure:3943: $? = 0

configure:3952: result: yes

configure:3961: checking whether gcc accepts -g

configure:3981: gcc -c -g conftest.c >&5

configure:3981: $? = 0

configure:4022: result: yes

configure:4039: checking for gcc option to accept ISO C89

configure:4103: gcc -c -g -O2 conftest.c >&5

configure:4103: $? = 0

configure:4116: result: none needed

configure:4141: checking whether gcc understands -c and -o together

configure:4163: gcc -c conftest.c -o conftest2.o

configure:4166: $? = 0

configure:4163: gcc -c conftest.c -o conftest2.o

configure:4166: $? = 0

configure:4178: result: yes

configure:4197: checking dependency style of gcc

configure:4308: result: gcc3

configure:4373: checking for ar

configure:4389: found /usr/bin/ar

configure:4400: result: ar

configure:4426: checking the archiver (ar) interface

configure:4442: gcc -c -g -O2 conftest.c >&5

configure:4442: $? = 0

configure:4444: ar cru libconftest.a conftest.o >&5

configure:4447: $? = 0

configure:4475: result: ar

configure:4496: setting up libtool

configure:4544: checking how to print strings

configure:4571: result: printf

configure:4592: checking for a sed that does not truncate output

configure:4656: result: /bin/sed

configure:4674: checking for grep that handles long lines and -e

configure:4732: result: /bin/grep

configure:4737: checking for egrep

configure:4799: result: /bin/grep -E

configure:4804: checking for fgrep

configure:4866: result: /bin/grep -F

configure:4901: checking for ld used by gcc

configure:4968: result: /usr/bin/ld

configure:4975: checking if the linker (/usr/bin/ld) is GNU ld

configure:4990: result: yes

configure:5002: checking for BSD- or MS-compatible name lister (nm)

configure:5051: result: /usr/bin/nm -B

configure:5181: checking the name lister (/usr/bin/nm -B) interface

configure:5188: gcc -c -g -O2 conftest.c >&5

configure:5191: /usr/bin/nm -B "conftest.o"

configure:5194: output

0000000000000000 B some_variable

configure:5201: result: BSD nm

configure:5204: checking whether ln -s works

configure:5208: result: yes

configure:5216: checking the maximum length of command line arguments

configure:5346: result: 1966080

configure:5363: checking whether the shell understands some XSI constructs

configure:5373: result: yes

configure:5377: checking whether the shell understands "+="

configure:5383: result: yes

configure:5418: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format

configure:5458: result: func_convert_file_noop

configure:5465: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format

configure:5485: result: func_convert_file_noop

configure:5492: checking for /usr/bin/ld option to reload object files

configure:5499: result: -r

configure:5573: checking for objdump

configure:5589: found /usr/bin/objdump

configure:5600: result: objdump

configure:5632: checking how to recognize dependent libraries

configure:5834: result: pass_all

configure:5919: checking for dlltool

configure:5949: result: no

configure:5979: checking how to associate runtime and link libraries

configure:6006: result: printf %s\n

configure:6130: checking for archiver @FILE support

configure:6147: gcc -c -g -O2 conftest.c >&5

configure:6147: $? = 0

configure:6150: ar cru libconftest.a @conftest.lst >&5

configure:6153: $? = 0

configure:6158: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:6161: $? = 1

configure:6173: result: @

configure:6231: checking for strip

configure:6247: found /usr/bin/strip

configure:6258: result: strip

configure:6330: checking for ranlib

configure:6346: found /usr/bin/ranlib

configure:6357: result: ranlib

configure:6459: checking command to parse /usr/bin/nm -B output from gcc object

configure:6579: gcc -c -g -O2 conftest.c >&5

configure:6582: $? = 0

configure:6586: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:6589: $? = 0

configure:6655: gcc -o conftest -g -O2 conftest.c conftstm.o >&5

configure:6658: $? = 0

configure:6696: result: ok

configure:6733: checking for sysroot

configure:6763: result: no

configure:6840: gcc -c -g -O2 conftest.c >&5

configure:6843: $? = 0

configure:7019: checking for mt

configure:7049: result: no

configure:7069: checking if : is a manifest tool

configure:7075: : '-?'

configure:7083: result: no

configure:7725: checking how to run the C preprocessor

configure:7756: gcc -E conftest.c

configure:7756: $? = 0

configure:7770: gcc -E conftest.c

conftest.c:12:28: error: ac_nonexistent.h: No such file or directory

configure:7770: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7795: result: gcc -E

configure:7815: gcc -E conftest.c

configure:7815: $? = 0

configure:7829: gcc -E conftest.c

conftest.c:12:28: error: ac_nonexistent.h: No such file or directory

configure:7829: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:7858: checking for ANSI C header files

configure:7878: gcc -c -g -O2 conftest.c >&5

configure:7878: $? = 0

configure:7951: gcc -o conftest -g -O2 conftest.c >&5

configure:7951: $? = 0

configure:7951: ./conftest

configure:7951: $? = 0

configure:7962: result: yes

configure:7975: checking for sys/types.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for sys/stat.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for stdlib.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for string.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for memory.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for strings.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for inttypes.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for stdint.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7975: checking for unistd.h

configure:7975: gcc -c -g -O2 conftest.c >&5

configure:7975: $? = 0

configure:7975: result: yes

configure:7989: checking for dlfcn.h

configure:7989: gcc -c -g -O2 conftest.c >&5

configure:7989: $? = 0

configure:7989: result: yes

configure:8195: checking for objdir

configure:8210: result: .libs

configure:8481: checking if gcc supports -fno-rtti -fno-exceptions

configure:8499: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C

configure:8503: $? = 0

configure:8516: result: no

configure:8843: checking for gcc option to produce PIC

configure:8850: result: -fPIC -DPIC

configure:8858: checking if gcc PIC flag -fPIC -DPIC works

configure:8876: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5

configure:8880: $? = 0

configure:8893: result: yes

configure:8922: checking if gcc static flag -static works

configure:8950: result: yes

configure:8965: checking if gcc supports -c -o file.o

configure:8986: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5

configure:8990: $? = 0

configure:9012: result: yes

configure:9020: checking if gcc supports -c -o file.o

configure:9067: result: yes

configure:9100: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:10253: result: yes

configure:10290: checking whether -lc should be explicitly linked in

configure:10298: gcc -c -g -O2 conftest.c >&5

configure:10301: $? = 0

configure:10316: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1

configure:10319: $? = 0

configure:10333: result: no

configure:10493: checking dynamic linker characteristics

configure:11004: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5

configure:11004: $? = 0

configure:11226: result: GNU/Linux ld.so

configure:11333: checking how to hardcode library paths into programs

configure:11358: result: immediate

configure:11898: checking whether stripping libraries is possible

configure:11903: result: yes

configure:11938: checking if libtool supports shared libraries

configure:11940: result: yes

configure:11943: checking whether to build shared libraries

configure:11964: result: yes

configure:11967: checking whether to build static libraries

configure:11971: result: yes

configure:12056: checking for bash

configure:12086: result: /bin/sh

configure:12153: checking for gcc

configure:12180: result: gcc

configure:12245: checking for g++

configure:12261: found /usr/bin/g++

configure:12272: result: g++

configure:12294: checking for gcc option to accept ISO C99

configure:12443: gcc -c -g -O2 conftest.c >&5

conftest.c:74: error: expected ';', ',' or ')' before 'text'

conftest.c: In function 'main':

conftest.c:128: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'

conftest.c:128: error: 'newvar' undeclared (first use in this function)

conftest.c:128: error: (Each undeclared identifier is reported only once

conftest.c:128: error: for each function it appears in.)

conftest.c:138: error: 'for' loop initial declarations are only allowed in C99 mode

conftest.c:138: note: use option -std=c99 or -std=gnu99 to compile your code

configure:12443: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| /* end confdefs.h. */

| #include <stdarg.h>

| #include <stdbool.h>

| #include <stdlib.h>

| #include <wchar.h>

| #include <stdio.h>

|

| // Check varargs macros. These examples are taken from C99 6.10.3.5.

| #define debug(...) fprintf (stderr, __VA_ARGS__)

| #define showlist(...) puts (#__VA_ARGS__)

| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))

| static void

| test_varargs_macros (void)

| {

| int x = 1234;

| int y = 5678;

| debug ("Flag");

| debug ("X = %d\n", x);

| showlist (The first, second, and third items.);

| report (x>y, "x is %d but y is %d", x, y);

| }

|

| // Check long long types.

| #define BIG64 18446744073709551615ull

| #define BIG32 4294967295ul

| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)

| #if !BIG_OK

| your preprocessor is broken;

| #endif

| #if BIG_OK

| #else

| your preprocessor is broken;

| #endif

| static long long int bignum = -9223372036854775807LL;

| static unsigned long long int ubignum = BIG64;

|

| struct incomplete_array

| {

| int datasize;

| double data[];

| };

|

| struct named_init {

| int number;

| const wchar_t *name;

| double average;

| };

|

| typedef const char *ccp;

|

| static inline int

| test_restrict (ccp restrict text)

| {

| // See if C++-style comments work.

| // Iterate through items via the restricted pointer.

| // Also check for declarations in for loops.

| for (unsigned int i = 0; *(text+i) != '\0'; ++i)

| continue;

| return 0;

| }

|

| // Check varargs and va_copy.

| static void

| test_varargs (const char *format, ...)

| {

| va_list args;

| va_start (args, format);

| va_list args_copy;

| va_copy (args_copy, args);

|

| const char *str;

| int number;

| float fnumber;

|

| while (*format)

| {

| switch (*format++)

| {

| case 's': // string

| str = va_arg (args_copy, const char *);

| break;

| case 'd': // int

| number = va_arg (args_copy, int);

| break;

| case 'f': // float

| fnumber = va_arg (args_copy, double);

| break;

| default:

| break;

| }

| }

| va_end (args_copy);

| va_end (args);

| }

|

| int

| main ()

| {

|

| // Check bool.

| _Bool success = false;

|

| // Check restrict.

| if (test_restrict ("String literal") == 0)

| success = true;

| char *restrict newvar = "Another string";

|

| // Check varargs.

| test_varargs ("s, d' f .", "string", 65, 34.234);

| test_varargs_macros ();

|

| // Check flexible array members.

| struct incomplete_array *ia =

| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));

| ia->datasize = 10;

| for (int i = 0; i < ia->datasize; ++i)

| ia->data[i] = i * 1.234;

|

| // Check named initializers.

| struct named_init ni = {

| .number = 34,

| .name = L"Test wide string",

| .average = 543.34343,

| };

|

| ni.number = 58;

|

| int dynamic_array[ni.number];

| dynamic_array[ni.number - 1] = 543;

|

| // work around unused variable warnings

| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'

| || dynamic_array[ni.number - 1] != 543);

|

| ;

| return 0;

| }

configure:12443: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:12443: $? = 0

configure:12463: result: -std=gnu99

configure:12472: checking for C/C++ restrict keyword

configure:12497: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:12497: $? = 0

configure:12505: result: __restrict

configure:12526: checking for gcc -std=gnu99 option to support OpenMP

configure:12541: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

conftest.c:27: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me'

In file included from conftest.c:29:

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: expected ')' before '*' token

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: expected ')' before '*' token

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: expected ')' before '*' token

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: expected ')' before '*' token

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected ')' before '*' token

configure:12541: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| /* end confdefs.h. */

|

| #ifndef _OPENMP

| choke me

| #endif

| #include <omp.h>

| int main () { return omp_get_num_threads (); }

|

configure:12558: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c >&5

configure:12558: $? = 0

configure:12572: result: -fopenmp

configure:12626: checking for ar

configure:12653: result: ar

configure:12810: checking for ld

configure:12837: result: /usr/bin/ld -m elf_x86_64

configure:12902: checking for nm

configure:12929: result: /usr/bin/nm -B

configure:12994: checking for ar

configure:13021: result: ar

configure:13086: checking for as

configure:13102: found /usr/bin/as

configure:13113: result: as

configure:13178: checking for dlltool

configure:13205: result: false

configure:13270: checking for objdump

configure:13297: result: objdump

configure:13362: checking for strip

configure:13389: result: strip

configure:13454: checking for ranlib

configure:13481: result: ranlib

configure:13616: checking for C++ compiler version

configure:13625: g++ --version >&5

g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)

Copyright (C) 2010 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13636: $? = 0

configure:13625: g++ -v >&5

Using built-in specs.

Target: x86_64-redhat-linux

Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux

Thread model: posix

gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC)

configure:13636: $? = 0

configure:13625: g++ -V >&5

g++: '-V' option must have argument

configure:13636: $? = 1

configure:13625: g++ -qversion >&5

g++: unrecognized option '-qversion'

g++: no input files

configure:13636: $? = 1

configure:13640: checking whether we are using the GNU C++ compiler

configure:13659: g++ -c conftest.cpp >&5

configure:13659: $? = 0

configure:13668: result: yes

configure:13677: checking whether g++ accepts -g

configure:13697: g++ -c -g conftest.cpp >&5

configure:13697: $? = 0

configure:13738: result: yes

configure:13763: checking dependency style of g++

configure:13874: result: gcc3

configure:13907: checking how to run the C++ preprocessor

configure:13934: g++ -E conftest.cpp

configure:13934: $? = 0

configure:13948: g++ -E conftest.cpp

conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory

configure:13948: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:13973: result: g++ -E

configure:13993: g++ -E conftest.cpp

configure:13993: $? = 0

configure:14007: g++ -E conftest.cpp

conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory

configure:14007: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:14176: checking for ld used by g++

configure:14243: result: /usr/bin/ld -m elf_x86_64

configure:14250: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld

configure:14265: result: yes

configure:14320: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:15325: result: yes

configure:15361: g++ -c -g -O2 conftest.cpp >&5

configure:15364: $? = 0

configure:15884: checking for g++ option to produce PIC

configure:15891: result: -fPIC -DPIC

configure:15899: checking if g++ PIC flag -fPIC -DPIC works

configure:15917: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5

configure:15921: $? = 0

configure:15934: result: yes

configure:15957: checking if g++ static flag -static works

configure:15985: result: yes

configure:15997: checking if g++ supports -c -o file.o

configure:16018: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5

configure:16022: $? = 0

configure:16044: result: yes

configure:16049: checking if g++ supports -c -o file.o

configure:16096: result: yes

configure:16126: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:16162: result: yes

configure:16303: checking dynamic linker characteristics

configure:16970: result: GNU/Linux ld.so

configure:17023: checking how to hardcode library paths into programs

configure:17048: result: immediate

configure:17100: checking for special C compiler options needed for large files

configure:17145: result: no

configure:17151: checking for _FILE_OFFSET_BITS value needed for large files

configure:17176: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17176: $? = 0

configure:17208: result: no

configure:17299: checking for stdlib.h

configure:17299: result: yes

configure:17299: checking for unistd.h

configure:17299: result: yes

configure:17299: checking for sys/param.h

configure:17299: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17299: $? = 0

configure:17299: result: yes

configure:17319: checking for getpagesize

configure:17319: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17319: $? = 0

configure:17319: result: yes

configure:17328: checking for working mmap

configure:17475: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17475: $? = 0

configure:17475: ./conftest

configure:17475: $? = 0

configure:17485: result: yes

configure:17496: checking for malloc in -lmalloc

configure:17521: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5

conftest.c:37: warning: conflicting types for built-in function 'malloc'

/usr/bin/ld: cannot find -lmalloc

collect2: ld returned 1 exit status

configure:17521: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char malloc ();

| int

| main ()

| {

| return malloc ();

| ;

| return 0;

| }

configure:17530: result: no

configure:17543: checking for struct stat.st_blksize

configure:17543: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17543: $? = 0

configure:17543: result: yes

configure:17557: checking sys/resource.h usability

configure:17557: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17557: $? = 0

configure:17557: result: yes

configure:17557: checking sys/resource.h presence

configure:17557: gcc -E conftest.c

configure:17557: $? = 0

configure:17557: result: yes

configure:17557: checking for sys/resource.h

configure:17557: result: yes

configure:17569: checking sys/times.h usability

configure:17569: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17569: $? = 0

configure:17569: result: yes

configure:17569: checking sys/times.h presence

configure:17569: gcc -E conftest.c

configure:17569: $? = 0

configure:17569: result: yes

configure:17569: checking for sys/times.h

configure:17569: result: yes

configure:17581: checking malloc.h usability

configure:17581: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17581: $? = 0

configure:17581: result: yes

configure:17581: checking malloc.h presence

configure:17581: gcc -E conftest.c

configure:17581: $? = 0

configure:17581: result: yes

configure:17581: checking for malloc.h

configure:17581: result: yes

configure:17593: checking glob.h usability

configure:17593: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17593: $? = 0

configure:17593: result: yes

configure:17593: checking glob.h presence

configure:17593: gcc -E conftest.c

configure:17593: $? = 0

configure:17593: result: yes

configure:17593: checking for glob.h

configure:17593: result: yes

configure:17605: checking fnmatch.h usability

configure:17605: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17605: $? = 0

configure:17605: result: yes

configure:17605: checking fnmatch.h presence

configure:17605: gcc -E conftest.c

configure:17605: $? = 0

configure:17605: result: yes

configure:17605: checking for fnmatch.h

configure:17605: result: yes

configure:17617: checking wordexp.h usability

configure:17617: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17617: $? = 0

configure:17617: result: yes

configure:17617: checking wordexp.h presence

configure:17617: gcc -E conftest.c

configure:17617: $? = 0

configure:17617: result: yes

configure:17617: checking for wordexp.h

configure:17617: result: yes

configure:17629: checking execinfo.h usability

configure:17629: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17629: $? = 0

configure:17629: result: yes

configure:17629: checking execinfo.h presence

configure:17629: gcc -E conftest.c

configure:17629: $? = 0

configure:17629: result: yes

configure:17629: checking for execinfo.h

configure:17629: result: yes

configure:17643: checking for mallinfo

configure:17643: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17643: $? = 0

configure:17643: result: yes

configure:17654: checking for backtrace

configure:17654: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17654: $? = 0

configure:17654: result: yes

configure:17667: checking for getrlimit

configure:17667: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17667: $? = 0

configure:17667: result: yes

configure:17678: checking for gethostname

configure:17678: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5

configure:17678: $? = 0

configure:17678: result: yes

configure:17746: checking for floor in -lm

configure:17771: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5

conftest.c:53: warning: conflicting types for built-in function 'floor'

configure:17771: $? = 0

configure:17780: result: yes

configure:17793: checking whether isnan is declared

configure:17793: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17793: $? = 0

configure:17793: result: yes

configure:17808: checking for sqrtl

configure:17808: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5

conftest.c:71: warning: conflicting types for built-in function 'sqrtl'

configure:17808: $? = 0

configure:17808: result: yes

configure:17819: checking for feenableexcept

configure:17819: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5

configure:17819: $? = 0

configure:17819: result: yes

configure:17829: checking for fenv_t.__control

configure:17829: gcc -std=gnu99 -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:56: error: 'fenv_t' has no member named '__control'

configure:17829: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:17829: gcc -std=gnu99 -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:56: error: 'fenv_t' has no member named '__control'

configure:17829: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| /* end confdefs.h. */

| #include <fenv.h>

|

| int

| main ()

| {

| static fenv_t ac_aggr;

| if (sizeof ac_aggr.__control)

| return 0;

| ;

| return 0;

| }

configure:17829: result: no

configure:17839: checking for fenv_t.__mxcsr

configure:17839: gcc -std=gnu99 -c -g -O2 conftest.c >&5

configure:17839: $? = 0

configure:17839: result: yes

configure:17862: checking for DATA support

configure:17876: result:

configure:18020: checking if compiler needs -Werror to reject unknown flags

configure:18036: gcc -std=gnu99 -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5

cc1: error: unrecognized command line option "-Wunknown-warning-option"

cc1: error: unrecognized command line option "-Wsizeof-array-argument"

configure:18036: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| int foo(void);

| int

| main ()

| {

| foo()

| ;

| return 0;

| }

configure:18041: result: no

configure:18107: checking for the pthreads library -lpthreads

configure:18145: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lpthreads -lm >&5

/usr/bin/ld: cannot find -lpthreads

collect2: ld returned 1 exit status

configure:18145: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| #include <pthread.h>

| static void routine(void *a) { a = 0; }

| static void *start_routine(void *a) { return a; }

| int

| main ()

| {

| pthread_t th; pthread_attr_t attr;

| pthread_create(&th, 0, start_routine, 0);

| pthread_join(th, 0);

| pthread_attr_init(&attr);

| pthread_cleanup_push(routine, 0);

| pthread_cleanup_pop(0) /* ; */

| ;

| return 0;

| }

configure:18154: result: no

configure:18052: checking whether pthreads work without any flags

configure:18145: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5

configure:18145: $? = 0

configure:18154: result: yes

configure:18173: checking for joinable pthread attribute

configure:18188: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5

configure:18188: $? = 0

configure:18194: result: PTHREAD_CREATE_JOINABLE

configure:18204: checking if more special flags are required for pthreads

configure:18219: result: no

configure:18225: checking for PTHREAD_PRIO_INHERIT

configure:18242: gcc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5

conftest.c: In function 'main':

conftest.c:56: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function)

conftest.c:56: error: (Each undeclared identifier is reported only once

conftest.c:56: error: for each function it appears in.)

configure:18242: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| /* end confdefs.h. */

| #include <pthread.h>

| int

| main ()

| {

| int i = PTHREAD_PRIO_INHERIT;

| ;

| return 0;

| }

configure:18251: result: no

configure:18519: checking szlib.h usability

configure:18519: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/szip-2.1/include conftest.c >&5

configure:18519: $? = 0

configure:18519: result: yes

configure:18519: checking szlib.h presence

configure:18519: gcc -E -I/usr/local/szip-2.1/include conftest.c

configure:18519: $? = 0

configure:18519: result: yes

configure:18519: checking for szlib.h

configure:18519: result: yes

configure:18529: checking for library containing SZ_BufftoBuffCompress

configure:18560: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/szip-2.1/include -L/usr/local/szip-2.1/lib conftest.c -lm >&5

/tmp/ccKRLLC9.o: In function `main':

/usr/local/cdo-1.8.2/conftest.c:65: undefined reference to `SZ_BufftoBuffCompress'

collect2: ld returned 1 exit status

configure:18560: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_SZLIB_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char SZ_BufftoBuffCompress ();

| int

| main ()

| {

| return SZ_BufftoBuffCompress ();

| ;

| return 0;

| }

configure:18560: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/szip-2.1/include -L/usr/local/szip-2.1/lib conftest.c -lsz -lm >&5

configure:18560: $? = 0

configure:18577: result: -lsz

configure:18767: checking hdf5.h usability

configure:18767: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include conftest.c >&5

configure:18767: $? = 0

configure:18767: result: yes

configure:18767: checking hdf5.h presence

configure:18767: gcc -E -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include conftest.c

configure:18767: $? = 0

configure:18767: result: yes

configure:18767: checking for hdf5.h

configure:18767: result: yes

configure:18777: checking for library containing H5Fopen

configure:18808: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include -L/usr/local/hdf5-1.8.9/lib -L/usr/local/szip-2.1/lib conftest.c -lsz -lm >&5

/tmp/ccHnIQBf.o: In function `main':

/usr/local/cdo-1.8.2/conftest.c:67: undefined reference to `H5Fopen'

collect2: ld returned 1 exit status

configure:18808: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5Fopen ();

| int

| main ()

| {

| return H5Fopen ();

| ;

| return 0;

| }

configure:18808: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include -L/usr/local/hdf5-1.8.9/lib -L/usr/local/szip-2.1/lib conftest.c -lhdf5 -lsz -lm >&5

configure:18808: $? = 0

configure:18825: result: -lhdf5

configure:18837: checking for library containing H5DSis_scale

configure:18868: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include -L/usr/local/hdf5-1.8.9/lib -L/usr/local/szip-2.1/lib conftest.c -lhdf5 -lsz -lm >&5

/tmp/ccXWvqar.o: In function `main':

/usr/local/cdo-1.8.2/conftest.c:68: undefined reference to `H5DSis_scale'

collect2: ld returned 1 exit status

configure:18868: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_GLOB_H 1

| #define HAVE_FNMATCH_H 1

| #define HAVE_WORDEXP_H 1

| #define HAVE_EXECINFO_H 1

| #define HAVE_MALLINFO 1

| #define HAVE_BACKTRACE 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETHOSTNAME 1

| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)"

| #define USER_NAME "wrf"

| #define HOST_NAME "eurus-wind"

| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"

| #define HAVE_LIBM 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_SQRTL 1

| #define HAVE_FEENABLEEXCEPT 1

| #define HAVE_FENV_T___MXCSR 1

| #define ENABLE_DATA 1

| #define HAVE_LIBPTHREAD 1

| #define HAVE_SZLIB_H 1

| #define HAVE_LIBSZ 1

| #define HAVE_HDF5_H 1

| #define HAVE_LIBHDF5 1

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char H5DSis_scale ();

| int

| main ()

| {

| return H5DSis_scale ();

| ;

| return 0;

| }

configure:18868: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include -L/usr/local/hdf5-1.8.9/lib -L/usr/local/szip-2.1/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5

configure:18868: $? = 0

configure:18885: result: -lhdf5_hl

configure:19112: checking netcdf.h usability

configure:19112: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/netcdf-4.1.3/include -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include conftest.c >&5

configure:19112: $? = 0

configure:19112: result: yes

configure:19112: checking netcdf.h presence

configure:19112: gcc -E -I/usr/local/netcdf-4.1.3/include -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include conftest.c

configure:19112: $? = 0

configure:19112: result: yes

configure:19112: checking for netcdf.h

configure:19112: result: yes

configure:19122: checking for library containing nc_open

configure:19153: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/netcdf-4.1.3/include -I/usr/local/hdf5-1.8.9/include -I/usr/local/szip-2.1/include -L/usr/local/netcdf-4.1.3/lib -L/usr/local/hdf5-1.8.9/lib -L/usr/local/szip-2.1/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5

/tmp/ccdGW5wE.o: In function `main':

/usr/local/cdo-1.8.2/conftest.c:69: undefined reference to `nc_open'

collect2: ld returned 1 exit status

configure:19153: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "cdo"

| #define PACKAGE_TARNAME "cdo"

| #define PACKAGE_VERSION "1.8.2"

| #define PACKAGE_STRING "cdo 1.8.2"

| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"

| #define PACKAGE_URL ""

| #define CDO "1.8.2"

| #define PACKAGE "cdo"

| #define VERSION "1.8.2"

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define restrict __restrict

| #define HAVE_STDLIB_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_GETPAGESIZE 1

| #define HAVE_MMAP 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_SYS_TIMES_H 1

| #define HAVE_MALLOC_H 1