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Compile CDO with preinstalled grib_api: can not link ยป config.log

tao lu, 2016-05-02 11:22

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.7.2rc3, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-netcdf=/home/taolu/WRF/LIBRARIES/netcdf --with-grib_api=/home/taolu/WRF/LIBRARIES/grib_api/ --prefix=/home/taolu/WRF/LIBRARIES/cdo --disable-shared

## --------- ##
## Platform. ##
## --------- ##

hostname = hyd
uname -m = x86_64
uname -r = 2.6.32-573.12.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Dec 15 21:19:08 UTC 2015

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/pgi/linux86-64/12.2/bin
PATH: /home/uge/bin/lx-amd64
PATH: /home/appl/openmpi-1.4.4-ic120/bin
PATH: /opt/pgi/linux86-64/12.2/bin
PATH: /opt/intel/composerxe-2011.4.191/bin/intel64
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /opt/dell/srvadmin/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2602: checking build system type
configure:2616: result: x86_64-unknown-linux-gnu
configure:2636: checking host system type
configure:2649: result: x86_64-unknown-linux-gnu
configure:2688: checking for a BSD-compatible install
configure:2756: result: /usr/bin/install -c
configure:2767: checking whether build environment is sane
configure:2822: result: yes
configure:2973: checking for a thread-safe mkdir -p
configure:3012: result: /bin/mkdir -p
configure:3019: checking for gawk
configure:3035: found /bin/gawk
configure:3046: result: gawk
configure:3057: checking whether make sets $(MAKE)
configure:3079: result: yes
configure:3108: checking whether make supports nested variables
configure:3125: result: yes
configure:3253: checking whether to enable maintainer-specific portions of Makefiles
configure:3262: result: no
configure:3289: checking for style of include used by make
configure:3317: result: GNU
configure:3388: checking for gcc
configure:3404: found /usr/bin/gcc
configure:3415: result: gcc
configure:3644: checking for C compiler version
configure:3653: gcc --version >&5
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3664: $? = 0
configure:3653: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC)
configure:3664: $? = 0
configure:3653: gcc -V >&5
gcc: '-V' option must have argument
configure:3664: $? = 1
configure:3653: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3664: $? = 1
configure:3684: checking whether the C compiler works
configure:3706: gcc -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:3710: $? = 0
configure:3758: result: yes
configure:3761: checking for C compiler default output file name
configure:3763: result: a.out
configure:3769: checking for suffix of executables
configure:3776: gcc -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:3780: $? = 0
configure:3802: result:
configure:3824: checking whether we are cross compiling
configure:3832: gcc -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:3836: $? = 0
configure:3843: ./conftest
configure:3847: $? = 0
configure:3862: result: no
configure:3867: checking for suffix of object files
configure:3889: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:3893: $? = 0
configure:3914: result: o
configure:3918: checking whether we are using the GNU C compiler
configure:3937: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:3937: $? = 0
configure:3946: result: yes
configure:3955: checking whether gcc accepts -g
configure:3975: gcc -c -g -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:3975: $? = 0
configure:4016: result: yes
configure:4033: checking for gcc option to accept ISO C89
configure:4097: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:4097: $? = 0
configure:4110: result: none needed
configure:4135: checking whether gcc understands -c and -o together
configure:4157: gcc -c conftest.c -o conftest2.o
configure:4160: $? = 0
configure:4157: gcc -c conftest.c -o conftest2.o
configure:4160: $? = 0
configure:4172: result: yes
configure:4191: checking dependency style of gcc
configure:4302: result: gcc3
configure:4367: checking for ar
configure:4383: found /usr/bin/ar
configure:4394: result: ar
configure:4420: checking the archiver (ar) interface
configure:4436: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:4436: $? = 0
configure:4438: ar cru libconftest.a conftest.o >&5
configure:4441: $? = 0
configure:4469: result: ar
configure:4490: setting up libtool
configure:4538: checking how to print strings
configure:4565: result: printf
configure:4586: checking for a sed that does not truncate output
configure:4650: result: /bin/sed
configure:4668: checking for grep that handles long lines and -e
configure:4726: result: /bin/grep
configure:4731: checking for egrep
configure:4793: result: /bin/grep -E
configure:4798: checking for fgrep
configure:4860: result: /bin/grep -F
configure:4895: checking for ld used by gcc
configure:4962: result: /usr/bin/ld
configure:4969: checking if the linker (/usr/bin/ld) is GNU ld
configure:4984: result: yes
configure:4996: checking for BSD- or MS-compatible name lister (nm)
configure:5045: result: /usr/bin/nm -B
configure:5175: checking the name lister (/usr/bin/nm -B) interface
configure:5182: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:5185: /usr/bin/nm -B "conftest.o"
configure:5188: output
0000000000000000 B some_variable
configure:5195: result: BSD nm
configure:5198: checking whether ln -s works
configure:5202: result: yes
configure:5210: checking the maximum length of command line arguments
configure:5340: result: 3458764513820540925
configure:5357: checking whether the shell understands some XSI constructs
configure:5367: result: yes
configure:5371: checking whether the shell understands "+="
configure:5377: result: yes
configure:5412: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:5452: result: func_convert_file_noop
configure:5459: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:5479: result: func_convert_file_noop
configure:5486: checking for /usr/bin/ld option to reload object files
configure:5493: result: -r
configure:5567: checking for objdump
configure:5583: found /usr/bin/objdump
configure:5594: result: objdump
configure:5626: checking how to recognize dependent libraries
configure:5828: result: pass_all
configure:5913: checking for dlltool
configure:5943: result: no
configure:5973: checking how to associate runtime and link libraries
configure:6000: result: printf %s\n
configure:6124: checking for archiver @FILE support
configure:6141: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:6141: $? = 0
configure:6144: ar cru libconftest.a @conftest.lst >&5
configure:6147: $? = 0
configure:6152: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6155: $? = 1
configure:6167: result: @
configure:6225: checking for strip
configure:6241: found /usr/bin/strip
configure:6252: result: strip
configure:6324: checking for ranlib
configure:6340: found /usr/bin/ranlib
configure:6351: result: ranlib
configure:6453: checking command to parse /usr/bin/nm -B output from gcc object
configure:6573: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:6576: $? = 0
configure:6580: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6583: $? = 0
configure:6649: gcc -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c conftstm.o >&5
configure:6652: $? = 0
configure:6690: result: ok
configure:6727: checking for sysroot
configure:6757: result: no
configure:6834: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:6837: $? = 0
configure:7013: checking for mt
configure:7043: result: no
configure:7063: checking if : is a manifest tool
configure:7069: : '-?'
configure:7077: result: no
configure:7719: checking how to run the C preprocessor
configure:7750: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:7750: $? = 0
configure:7764: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:7764: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7789: result: gcc -E
configure:7809: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:7809: $? = 0
configure:7823: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:7823: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7852: checking for ANSI C header files
configure:7872: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7872: $? = 0
configure:7945: gcc -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:7945: $? = 0
configure:7945: ./conftest
configure:7945: $? = 0
configure:7956: result: yes
configure:7969: checking for sys/types.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for sys/stat.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for stdlib.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for string.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for memory.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for strings.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for inttypes.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for stdint.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7969: checking for unistd.h
configure:7969: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7969: $? = 0
configure:7969: result: yes
configure:7983: checking for dlfcn.h
configure:7983: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:7983: $? = 0
configure:7983: result: yes
configure:8189: checking for objdir
configure:8204: result: .libs
configure:8475: checking if gcc supports -fno-rtti -fno-exceptions
configure:8493: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:8497: $? = 0
configure:8510: result: no
configure:8837: checking for gcc option to produce PIC
configure:8844: result: -fPIC -DPIC
configure:8852: checking if gcc PIC flag -fPIC -DPIC works
configure:8870: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -fPIC -DPIC -DPIC conftest.c >&5
configure:8874: $? = 0
configure:8887: result: yes
configure:8916: checking if gcc static flag -static works
configure:8944: result: yes
configure:8959: checking if gcc supports -c -o file.o
configure:8980: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -o out/conftest2.o conftest.c >&5
configure:8984: $? = 0
configure:9006: result: yes
configure:9014: checking if gcc supports -c -o file.o
configure:9061: result: yes
configure:9094: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10247: result: yes
configure:10487: checking dynamic linker characteristics
configure:10998: gcc -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib -Wl,-rpath -Wl,/foo conftest.c >&5
configure:10998: $? = 0
configure:11220: result: GNU/Linux ld.so
configure:11327: checking how to hardcode library paths into programs
configure:11352: result: immediate
configure:11892: checking whether stripping libraries is possible
configure:11897: result: yes
configure:11932: checking if libtool supports shared libraries
configure:11934: result: yes
configure:11937: checking whether to build shared libraries
configure:11958: result: no
configure:11961: checking whether to build static libraries
configure:11965: result: yes
configure:12047: checking for gcc
configure:12074: result: gcc
configure:12139: checking for g++
configure:12155: found /usr/bin/g++
configure:12166: result: g++
configure:12188: checking for gcc option to accept ISO C99
configure:12337: gcc -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
conftest.c:74: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:128: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:128: error: 'newvar' undeclared (first use in this function)
conftest.c:128: error: (Each undeclared identifier is reported only once
conftest.c:128: error: for each function it appears in.)
conftest.c:138: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:138: note: use option -std=c99 or -std=gnu99 to compile your code
configure:12337: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:12337: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:12337: $? = 0
configure:12357: result: -std=gnu99
configure:12366: checking for C/C++ restrict keyword
configure:12391: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:12391: $? = 0
configure:12399: result: __restrict
configure:12420: checking for gcc -std=gnu99 option to support OpenMP
configure:12435: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
conftest.c:27: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me'
In file included from conftest.c:29:
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: expected ')' before '*' token
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: expected ')' before '*' token
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: expected ')' before '*' token
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: expected ')' before '*' token
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected ')' before '*' token
configure:12435: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| /* end confdefs.h. */
|
| #ifndef _OPENMP
| choke me
| #endif
| #include <omp.h>
| int main () { return omp_get_num_threads (); }
|
configure:12452: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:12452: $? = 0
configure:12466: result: -fopenmp
configure:12520: checking for ar
configure:12547: result: ar
configure:12704: checking for ld
configure:12731: result: /usr/bin/ld -m elf_x86_64
configure:12796: checking for nm
configure:12823: result: /usr/bin/nm -B
configure:12888: checking for ar
configure:12915: result: ar
configure:12980: checking for as
configure:12996: found /usr/bin/as
configure:13007: result: as
configure:13072: checking for dlltool
configure:13099: result: false
configure:13164: checking for objdump
configure:13191: result: objdump
configure:13256: checking for strip
configure:13283: result: strip
configure:13348: checking for ranlib
configure:13375: result: ranlib
configure:13510: checking for C++ compiler version
configure:13519: g++ --version >&5
g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:13530: $? = 0
configure:13519: g++ -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-16) (GCC)
configure:13530: $? = 0
configure:13519: g++ -V >&5
g++: '-V' option must have argument
configure:13530: $? = 1
configure:13519: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:13530: $? = 1
configure:13534: checking whether we are using the GNU C++ compiler
configure:13553: g++ -c -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp >&5
configure:13553: $? = 0
configure:13562: result: yes
configure:13571: checking whether g++ accepts -g
configure:13591: g++ -c -g -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp >&5
configure:13591: $? = 0
configure:13632: result: yes
configure:13657: checking dependency style of g++
configure:13768: result: gcc3
configure:13801: checking how to run the C++ preprocessor
configure:13828: g++ -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp
configure:13828: $? = 0
configure:13842: g++ -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp
conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory
configure:13842: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13867: result: g++ -E
configure:13887: g++ -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp
configure:13887: $? = 0
configure:13901: g++ -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp
conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory
configure:13901: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:14070: checking for ld used by g++
configure:14137: result: /usr/bin/ld -m elf_x86_64
configure:14144: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:14159: result: yes
configure:14214: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15219: result: yes
configure:15255: g++ -c -g -O2 -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.cpp >&5
configure:15258: $? = 0
configure:15778: checking for g++ option to produce PIC
configure:15785: result: -fPIC -DPIC
configure:15793: checking if g++ PIC flag -fPIC -DPIC works
configure:15811: g++ -c -g -O2 -I/home/taolu/WRF/LIBRARIES/grib2/include -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15815: $? = 0
configure:15828: result: yes
configure:15851: checking if g++ static flag -static works
configure:15879: result: yes
configure:15891: checking if g++ supports -c -o file.o
configure:15912: g++ -c -g -O2 -I/home/taolu/WRF/LIBRARIES/grib2/include -o out/conftest2.o conftest.cpp >&5
configure:15916: $? = 0
configure:15938: result: yes
configure:15943: checking if g++ supports -c -o file.o
configure:15990: result: yes
configure:16020: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:16056: result: yes
configure:16197: checking dynamic linker characteristics
configure:16864: result: GNU/Linux ld.so
configure:16917: checking how to hardcode library paths into programs
configure:16942: result: immediate
configure:16994: checking for special C compiler options needed for large files
configure:17039: result: no
configure:17045: checking for _FILE_OFFSET_BITS value needed for large files
configure:17070: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17070: $? = 0
configure:17102: result: no
configure:17193: checking for stdlib.h
configure:17193: result: yes
configure:17193: checking for unistd.h
configure:17193: result: yes
configure:17193: checking for sys/param.h
configure:17193: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17193: $? = 0
configure:17193: result: yes
configure:17213: checking for getpagesize
configure:17213: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17213: $? = 0
configure:17213: result: yes
configure:17222: checking for working mmap
configure:17369: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17369: $? = 0
configure:17369: ./conftest
configure:17369: $? = 0
configure:17379: result: yes
configure:17390: checking for malloc in -lmalloc
configure:17415: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lmalloc >&5
conftest.c:37: warning: conflicting types for built-in function 'malloc'
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:17415: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:17424: result: no
configure:17437: checking for struct stat.st_blksize
configure:17437: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17437: $? = 0
configure:17437: result: yes
configure:17451: checking sys/resource.h usability
configure:17451: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17451: $? = 0
configure:17451: result: yes
configure:17451: checking sys/resource.h presence
configure:17451: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17451: $? = 0
configure:17451: result: yes
configure:17451: checking for sys/resource.h
configure:17451: result: yes
configure:17463: checking sys/times.h usability
configure:17463: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17463: $? = 0
configure:17463: result: yes
configure:17463: checking sys/times.h presence
configure:17463: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17463: $? = 0
configure:17463: result: yes
configure:17463: checking for sys/times.h
configure:17463: result: yes
configure:17475: checking malloc.h usability
configure:17475: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17475: $? = 0
configure:17475: result: yes
configure:17475: checking malloc.h presence
configure:17475: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17475: $? = 0
configure:17475: result: yes
configure:17475: checking for malloc.h
configure:17475: result: yes
configure:17487: checking glob.h usability
configure:17487: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17487: $? = 0
configure:17487: result: yes
configure:17487: checking glob.h presence
configure:17487: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17487: $? = 0
configure:17487: result: yes
configure:17487: checking for glob.h
configure:17487: result: yes
configure:17499: checking fnmatch.h usability
configure:17499: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17499: $? = 0
configure:17499: result: yes
configure:17499: checking fnmatch.h presence
configure:17499: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17499: $? = 0
configure:17499: result: yes
configure:17499: checking for fnmatch.h
configure:17499: result: yes
configure:17511: checking wordexp.h usability
configure:17511: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17511: $? = 0
configure:17511: result: yes
configure:17511: checking wordexp.h presence
configure:17511: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17511: $? = 0
configure:17511: result: yes
configure:17511: checking for wordexp.h
configure:17511: result: yes
configure:17523: checking execinfo.h usability
configure:17523: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17523: $? = 0
configure:17523: result: yes
configure:17523: checking execinfo.h presence
configure:17523: gcc -E -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:17523: $? = 0
configure:17523: result: yes
configure:17523: checking for execinfo.h
configure:17523: result: yes
configure:17537: checking for mallinfo
configure:17537: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17537: $? = 0
configure:17537: result: yes
configure:17548: checking for backtrace
configure:17548: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17548: $? = 0
configure:17548: result: yes
configure:17561: checking for getrlimit
configure:17561: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17561: $? = 0
configure:17561: result: yes
configure:17572: checking for gethostname
configure:17572: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c >&5
configure:17572: $? = 0
configure:17572: result: yes
configure:17640: checking for floor in -lm
configure:17665: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
conftest.c:53: warning: conflicting types for built-in function 'floor'
configure:17665: $? = 0
configure:17674: result: yes
configure:17687: checking whether isnan is declared
configure:17687: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17687: $? = 0
configure:17687: result: yes
configure:17702: checking for sqrtl
configure:17702: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
conftest.c:71: warning: conflicting types for built-in function 'sqrtl'
configure:17702: $? = 0
configure:17702: result: yes
configure:17713: checking for feenableexcept
configure:17713: gcc -std=gnu99 -o conftest -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
configure:17713: $? = 0
configure:17713: result: yes
configure:17723: checking for fenv_t.__control
configure:17723: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:56: error: 'fenv_t' has no member named '__control'
configure:17723: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:17723: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:56: error: 'fenv_t' has no member named '__control'
configure:17723: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| /* end confdefs.h. */
| #include <fenv.h>
|
| int
| main ()
| {
| static fenv_t ac_aggr;
| if (sizeof ac_aggr.__control)
| return 0;
| ;
| return 0;
| }
configure:17723: result: no
configure:17733: checking for fenv_t.__mxcsr
configure:17733: gcc -std=gnu99 -c -fPIC -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:17733: $? = 0
configure:17733: result: yes
configure:17756: checking for DATA support
configure:17770: result:
configure:17914: checking if compiler needs -Werror to reject unknown flags
configure:17930: gcc -std=gnu99 -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
cc1: error: unrecognized command line option "-Wunknown-warning-option"
cc1: error: unrecognized command line option "-Wsizeof-array-argument"
configure:17930: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| int foo(void);
| int
| main ()
| {
| foo()
| ;
| return 0;
| }
configure:17935: result: no
configure:18001: checking for the pthreads library -lpthreads
configure:18039: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lpthreads -lm >&5
/usr/bin/ld: cannot find -lpthreads
collect2: ld returned 1 exit status
configure:18039: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void *a) { a = 0; }
| static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th, 0, start_routine, 0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0) /* ; */
| ;
| return 0;
| }
configure:18048: result: no
configure:17946: checking whether pthreads work without any flags
configure:18039: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
configure:18039: $? = 0
configure:18048: result: yes
configure:18067: checking for joinable pthread attribute
configure:18082: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
configure:18082: $? = 0
configure:18088: result: PTHREAD_CREATE_JOINABLE
configure:18098: checking if more special flags are required for pthreads
configure:18113: result: no
configure:18119: checking for PTHREAD_PRIO_INHERIT
configure:18136: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
conftest.c: In function 'main':
conftest.c:56: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function)
conftest.c:56: error: (Each undeclared identifier is reported only once
conftest.c:56: error: for each function it appears in.)
configure:18136: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| int
| main ()
| {
| int i = PTHREAD_PRIO_INHERIT;
| ;
| return 0;
| }
configure:18145: result: no
configure:18493: checking for szlib library
configure:18495: result: suppressed
configure:18805: checking for hdf5 library
configure:18807: result: suppressed
configure:18994: checking netcdf.h usability
configure:18994: gcc -std=gnu99 -c -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:18994: $? = 0
configure:18994: result: yes
configure:18994: checking netcdf.h presence
configure:18994: gcc -E -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:18994: $? = 0
configure:18994: result: yes
configure:18994: checking for netcdf.h
configure:18994: result: yes
configure:19004: checking for library containing nc_open
configure:19035: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/netcdf/lib -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lm >&5
/tmp/ccZ8tYIv.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:19035: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:19035: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/netcdf/lib -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lnetcdf -lm >&5
configure:19035: $? = 0
configure:19052: result: -lnetcdf
configure:19067: checking nc-config script
configure:19071: checking for nc-config
configure:19087: found /home/taolu/WRF/LIBRARIES/netcdf/bin/nc-config
configure:19098: result: /home/taolu/WRF/LIBRARIES/netcdf/bin/nc-config
configure:19107: checking netcdf's OpenDAP support
configure:19116: result: no
configure:19119: checking netcdf's nc2 support
configure:19126: result: yes
configure:19132: checking netcdf's nc4 support
configure:19142: result: no
configure:19145: checking netcdf's nc4/hdf5 support
configure:19155: result: no
configure:19405: checking for the CMOR library
configure:19407: result: suppressed
configure:19507: checking grib_api.h usability
configure:19507: gcc -std=gnu99 -c -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib_api//include -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c >&5
configure:19507: $? = 0
configure:19507: result: yes
configure:19507: checking grib_api.h presence
configure:19507: gcc -E -I/home/taolu/WRF/LIBRARIES/grib_api//include -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include conftest.c
configure:19507: $? = 0
configure:19507: result: yes
configure:19507: checking for grib_api.h
configure:19507: result: yes
configure:19517: checking for library containing grib_get_message
configure:19548: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib_api//include -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib_api//lib -L/home/taolu/WRF/LIBRARIES/netcdf/lib -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lnetcdf -lm >&5
/tmp/ccPnbiVO.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `grib_get_message'
collect2: ld returned 1 exit status
configure:19548: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:19548: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/home/taolu/WRF/LIBRARIES/grib_api//include -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include -L/home/taolu/WRF/LIBRARIES/grib_api//lib -L/home/taolu/WRF/LIBRARIES/netcdf/lib -L/home/taolu/WRF/LIBRARIES/grib2/lib conftest.c -lgrib_api -lnetcdf -lm >&5
/home/taolu/WRF/LIBRARIES/grib_api//lib/libgrib_api.so: undefined reference to `memcpy@GLIBC_2.14'
collect2: ld returned 1 exit status
configure:19548: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.7.2rc3"
| #define PACKAGE_STRING "cdo 1.7.2rc3"
| #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
| #define PACKAGE_URL ""
| #define CDO "1.7.2rc3"
| #define PACKAGE "cdo"
| #define VERSION "1.7.2rc3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define restrict __restrict
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_FNMATCH_H 1
| #define HAVE_WORDEXP_H 1
| #define HAVE_EXECINFO_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_BACKTRACE 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
| #define USER_NAME "taolu"
| #define HOST_NAME "hyd"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_SQRTL 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FENV_T___MXCSR 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:19565: result: no
configure:19575: error: Could not link to grib_api library

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-fPIC
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/home/taolu/WRF/LIBRARIES/grib2/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/home/taolu/WRF/LIBRARIES/grib2/lib
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_backtrace=yes
ac_cv_func_feenableexcept=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_func_sqrtl=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_execinfo_h=yes
ac_cv_header_fnmatch_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_grib_api_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_wordexp_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_member_fenv_t___control=no
ac_cv_member_fenv_t___mxcsr=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_NC_CONFIG=/home/taolu/WRF/LIBRARIES/netcdf/bin/nc-config
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp=-fopenmp
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_grib_get_message=no
ac_cv_search_nc_open=-lnetcdf
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_ar_interface=ar
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_PTHREAD_PRIO_INHERIT=no
lt_cv_ar_at_file=@
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=3458764513820540925
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/missing aclocal-1.14'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/missing autoconf'
AUTOHEADER='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/missing autoheader'
AUTOMAKE='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/missing automake-1.14'
AWK='gawk'
BUILD_AVX2_TESTS_FALSE=''
BUILD_AVX2_TESTS_TRUE=''
BUILD_AVX_TESTS_FALSE=''
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE=''
BUILD_SSE42_TESTS_TRUE=''
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-fPIC -fopenmp '
CLDFLAGS=''
CLIBS=''
CMOR_LIBS=''
CPP='gcc -E'
CPPFLAGS='-I/home/taolu/WRF/LIBRARIES/grib_api//include -I/home/taolu/WRF/LIBRARIES/netcdf/include -I/home/taolu/WRF/LIBRARIES/grib2/include'
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX=''
ENABLE_CXX=''
ENABLE_DATA=''
ENABLE_EXTRA=''
ENABLE_GRIB=''
ENABLE_GRIBAPI='yes'
ENABLE_IEG=''
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_NC2='yes'
ENABLE_NC4='no'
ENABLE_NC4HDF5='no'
ENABLE_NETCDF='yes'
ENABLE_SERVICE=''
ENABLE_THREADS='yes'
EXEEXT=''
FCFLAGS='-m64'
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT=''
HOST_NAME='hyd'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/home/taolu/WRF/LIBRARIES/grib_api//lib -L/home/taolu/WRF/LIBRARIES/netcdf/lib -L/home/taolu/WRF/LIBRARIES/grib2/lib'
LIBOBJS=''
LIBS='-lnetcdf -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG='/home/taolu/WRF/LIBRARIES/netcdf/bin/nc-config'
NETCDF_INCLUDE=' -I/home/taolu/WRF/LIBRARIES/netcdf/include'
NETCDF_LIBS=' -L/home/taolu/WRF/LIBRARIES/netcdf/lib -lnetcdf'
NETCDF_ROOT='/home/taolu/WRF/LIBRARIES/netcdf'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.7.2rc3'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.7.2rc3'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='gcc -std=gnu99'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USER_NAME='taolu'
VERSION='1.7.2rc3'
XML2_LIBS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/taolu/WRF/LIBRARIES/cdo-1.7.2rc3/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/taolu/WRF/LIBRARIES/cdo'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.7.2rc3"
#define PACKAGE_STRING "cdo 1.7.2rc3"
#define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo"
#define PACKAGE_URL ""
#define CDO "1.7.2rc3"
#define PACKAGE "cdo"
#define VERSION "1.7.2rc3"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define restrict __restrict
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_FNMATCH_H 1
#define HAVE_WORDEXP_H 1
#define HAVE_EXECINFO_H 1
#define HAVE_MALLINFO 1
#define HAVE_BACKTRACE 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)"
#define USER_NAME "taolu"
#define HOST_NAME "hyd"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define HAVE_DECL_ISNAN 1
#define HAVE_SQRTL 1
#define HAVE_FEENABLEEXCEPT 1
#define HAVE_FENV_T___MXCSR 1
#define ENABLE_DATA 1
#define HAVE_LIBPTHREAD 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_NETCDF2 1
#define HAVE_GRIB_API_H 1

configure: exit 1
    (1-1/1)