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Problem with CDO installation with hdf5-1.8.12 ยป config.log

Configure log - Dhirendra Kumar, 2015-10-09 17:57

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.6.7, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure CC=icc FC=ifort CXX=icpc --prefix=/export/home/dkumar/RLIB -with-netcdf=/export/home/dkumar/RLIB/ -with-hdf5=/export/home/dkumar/RLIB

## --------- ##
## Platform. ##
## --------- ##

hostname = weather.jnu.ac.in
uname -m = x86_64
uname -r = 2.6.32-279.14.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Nov 6 23:43:09 UTC 2012

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /export/home/dkumar/RLIB/bin
PATH: /usr/local/ncl-6.3.0/bin
PATH: /opt/intel/impi/4.1.0.024/intel64/bin
PATH: /opt/intel/impi/4.1.0.024/intel64/bin
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64
PATH: /opt/intel/impi/4.1.0.024/intel64/bin
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /export/home/dkumar/RLIB/bin
PATH: /usr/local/ncl-6.3.0/bin
PATH: /usr/local/ferret/bin
PATH: /opt/intel/impi/4.1.0.024/intel64/bin
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64
PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64
PATH: /opt/openmpi/bin
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /opt/bio/ncbi/bin
PATH: /opt/bio/mpiblast/bin
PATH: /opt/bio/EMBOSS/bin
PATH: /opt/bio/clustalw/bin
PATH: /opt/bio/tcoffee/bin
PATH: /opt/bio/hmmer/bin
PATH: /opt/bio/phylip/exe
PATH: /opt/bio/mrbayes
PATH: /opt/bio/fasta
PATH: /opt/bio/glimmer/bin
PATH: /opt/bio/glimmer/scripts
PATH: /opt/bio/gromacs/bin
PATH: /opt/bio/gmap/bin
PATH: /opt/bio/tigr/bin
PATH: /opt/bio/autodocksuite/bin
PATH: /opt/bio/wgs/bin
PATH: /opt/eclipse
PATH: /opt/ganglia/bin
PATH: /opt/ganglia/sbin
PATH: /usr/java/latest/bin
PATH: /opt/maven/bin
PATH: /opt/pdsh/bin
PATH: /opt/rocks/bin
PATH: /opt/rocks/sbin
PATH: /opt/condor/bin
PATH: /opt/condor/sbin
PATH: /opt/gridengine/bin/linux-x64
PATH: /opt/apps/hdf5-1.8.5/bin
PATH: /opt/apps/netcdf-4.1.2/bin
PATH: /opt/apps/NETCDF/intel-netcdf/bin
PATH: /opt/apps/JASPER/intel-jasper/bin
PATH: /opt/apps/LIBPNG/intel-libpng/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /opt/apps/hdf5-1.8.5/bin
PATH: /opt/apps/netcdf-4.1.2/bin
PATH: /opt/apps/NETCDF/intel-netcdf/bin
PATH: /opt/apps/JASPER/intel-jasper/bin
PATH: /opt/apps/LIBPNG/intel-libpng/bin
PATH: /home/dkumar/bin/
PATH: /export/home/dkumar/RLIB/bin/


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2601: checking build system type
configure:2615: result: x86_64-unknown-linux-gnu
configure:2635: checking host system type
configure:2648: result: x86_64-unknown-linux-gnu
configure:2687: checking for a BSD-compatible install
configure:2755: result: /usr/bin/install -c
configure:2766: checking whether build environment is sane
configure:2821: result: yes
configure:2972: checking for a thread-safe mkdir -p
configure:3011: result: /bin/mkdir -p
configure:3018: checking for gawk
configure:3034: found /bin/gawk
configure:3045: result: gawk
configure:3056: checking whether make sets $(MAKE)
configure:3078: result: yes
configure:3107: checking whether make supports nested variables
configure:3124: result: yes
configure:3252: checking whether to enable maintainer-specific portions of Makefiles
configure:3261: result: no
configure:3276: setting up libtool
configure:3324: checking how to print strings
configure:3351: result: printf
configure:3384: checking for style of include used by make
configure:3412: result: GNU
configure:3483: checking for gcc
configure:3510: result: icc
configure:3739: checking for C compiler version
configure:3748: icc --version >&5
icc (ICC) 13.0.1 20121010
Copyright (C) 1985-2012 Intel Corporation. All rights reserved.

configure:3759: $? = 0
configure:3748: icc -v >&5
icc version 13.0.1 (gcc version 4.4.6 compatibility)
configure:3759: $? = 0
configure:3748: icc -V >&5
Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.0.1.117 Build 20121010
Copyright (C) 1985-2012 Intel Corporation. All rights reserved.

configure:3759: $? = 0
configure:3748: icc -qversion >&5
icc: command line warning #10006: ignoring unknown option '-qversion'
icc: command line error: no files specified; for help type "icc -help"
configure:3759: $? = 1
configure:3779: checking whether the C compiler works
configure:3801: icc conftest.c >&5
configure:3805: $? = 0
configure:3853: result: yes
configure:3856: checking for C compiler default output file name
configure:3858: result: a.out
configure:3864: checking for suffix of executables
configure:3871: icc -o conftest conftest.c >&5
configure:3875: $? = 0
configure:3897: result:
configure:3919: checking whether we are cross compiling
configure:3927: icc -o conftest conftest.c >&5
configure:3931: $? = 0
configure:3938: ./conftest
configure:3942: $? = 0
configure:3957: result: no
configure:3962: checking for suffix of object files
configure:3984: icc -c conftest.c >&5
configure:3988: $? = 0
configure:4009: result: o
configure:4013: checking whether we are using the GNU C compiler
configure:4032: icc -c conftest.c >&5
configure:4032: $? = 0
configure:4041: result: yes
configure:4050: checking whether icc accepts -g
configure:4070: icc -c -g conftest.c >&5
configure:4070: $? = 0
configure:4111: result: yes
configure:4128: checking for icc option to accept ISO C89
configure:4192: icc -c -g -O2 conftest.c >&5
configure:4192: $? = 0
configure:4205: result: none needed
configure:4230: checking whether icc understands -c and -o together
configure:4252: icc -c conftest.c -o conftest2.o
configure:4255: $? = 0
configure:4252: icc -c conftest.c -o conftest2.o
configure:4255: $? = 0
configure:4267: result: yes
configure:4286: checking dependency style of icc
configure:4397: result: gcc3
configure:4412: checking for a sed that does not truncate output
configure:4476: result: /bin/sed
configure:4494: checking for grep that handles long lines and -e
configure:4552: result: /bin/grep
configure:4557: checking for egrep
configure:4619: result: /bin/grep -E
configure:4624: checking for fgrep
configure:4686: result: /bin/grep -F
configure:4721: checking for ld used by icc
configure:4788: result: /usr/bin/ld
configure:4795: checking if the linker (/usr/bin/ld) is GNU ld
configure:4810: result: yes
configure:4822: checking for BSD- or MS-compatible name lister (nm)
configure:4871: result: /usr/bin/nm -B
configure:5001: checking the name lister (/usr/bin/nm -B) interface
configure:5008: icc -c -g -O2 conftest.c >&5
configure:5011: /usr/bin/nm -B "conftest.o"
configure:5014: output
0000000000000000 N .debug_info_seg
0000000000000000 B some_variable
configure:5021: result: BSD nm
configure:5024: checking whether ln -s works
configure:5028: result: yes
configure:5036: checking the maximum length of command line arguments
configure:5166: result: 1966080
configure:5183: checking whether the shell understands some XSI constructs
configure:5193: result: yes
configure:5197: checking whether the shell understands "+="
configure:5203: result: yes
configure:5238: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:5278: result: func_convert_file_noop
configure:5285: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:5305: result: func_convert_file_noop
configure:5312: checking for /usr/bin/ld option to reload object files
configure:5319: result: -r
configure:5393: checking for objdump
configure:5409: found /usr/bin/objdump
configure:5420: result: objdump
configure:5452: checking how to recognize dependent libraries
configure:5654: result: pass_all
configure:5739: checking for dlltool
configure:5769: result: no
configure:5799: checking how to associate runtime and link libraries
configure:5826: result: printf %s\n
configure:5887: checking for ar
configure:5903: found /usr/bin/ar
configure:5914: result: ar
configure:5951: checking for archiver @FILE support
configure:5968: icc -c -g -O2 conftest.c >&5
configure:5968: $? = 0
configure:5971: ar cru libconftest.a @conftest.lst >&5
configure:5974: $? = 0
configure:5979: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:5982: $? = 1
configure:5994: result: @
configure:6052: checking for strip
configure:6068: found /usr/bin/strip
configure:6079: result: strip
configure:6151: checking for ranlib
configure:6167: found /usr/bin/ranlib
configure:6178: result: ranlib
configure:6280: checking command to parse /usr/bin/nm -B output from icc object
configure:6400: icc -c -g -O2 conftest.c >&5
configure:6403: $? = 0
configure:6407: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6410: $? = 0
configure:6476: icc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:6479: $? = 0
configure:6517: result: ok
configure:6554: checking for sysroot
configure:6584: result: no
configure:6661: icc -c -g -O2 conftest.c >&5
configure:6664: $? = 0
configure:6840: checking for mt
configure:6870: result: no
configure:6890: checking if : is a manifest tool
configure:6896: : '-?'
configure:6904: result: no
configure:7546: checking how to run the C preprocessor
configure:7577: icc -E conftest.c
configure:7577: $? = 0
configure:7591: icc -E conftest.c
conftest.c(11): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^

configure:7591: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7616: result: icc -E
configure:7636: icc -E conftest.c
configure:7636: $? = 0
configure:7650: icc -E conftest.c
conftest.c(11): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^

configure:7650: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:7679: checking for ANSI C header files
configure:7699: icc -c -g -O2 conftest.c >&5
configure:7699: $? = 0
configure:7772: icc -o conftest -g -O2 conftest.c >&5
configure:7772: $? = 0
configure:7772: ./conftest
configure:7772: $? = 0
configure:7783: result: yes
configure:7796: checking for sys/types.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for sys/stat.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for stdlib.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for string.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for memory.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for strings.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for inttypes.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for stdint.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7796: checking for unistd.h
configure:7796: icc -c -g -O2 conftest.c >&5
configure:7796: $? = 0
configure:7796: result: yes
configure:7810: checking for dlfcn.h
configure:7810: icc -c -g -O2 conftest.c >&5
configure:7810: $? = 0
configure:7810: result: yes
configure:8016: checking for objdir
configure:8031: result: .libs
configure:8302: checking if icc supports -fno-rtti -fno-exceptions
configure:8320: icc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
configure:8324: $? = 0
configure:8337: result: yes
configure:8664: checking for icc option to produce PIC
configure:8671: result: -fPIC -DPIC
configure:8679: checking if icc PIC flag -fPIC -DPIC works
configure:8697: icc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:8701: $? = 0
configure:8714: result: yes
configure:8743: checking if icc static flag -static works
configure:8771: result: yes
configure:8786: checking if icc supports -c -o file.o
configure:8807: icc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:8811: $? = 0
configure:8833: result: yes
configure:8841: checking if icc supports -c -o file.o
configure:8888: result: yes
configure:8921: checking whether the icc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10074: result: yes
configure:10111: checking whether -lc should be explicitly linked in
configure:10119: icc -c -g -O2 conftest.c >&5
configure:10122: $? = 0
configure:10137: icc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10140: $? = 0
configure:10154: result: no
configure:10314: checking dynamic linker characteristics
configure:10825: icc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:10825: $? = 0
configure:11047: result: GNU/Linux ld.so
configure:11154: checking how to hardcode library paths into programs
configure:11179: result: immediate
configure:11719: checking whether stripping libraries is possible
configure:11724: result: yes
configure:11759: checking if libtool supports shared libraries
configure:11761: result: yes
configure:11764: checking whether to build shared libraries
configure:11785: result: yes
configure:11788: checking whether to build static libraries
configure:11792: result: yes
configure:11874: checking for gcc
configure:11901: result: icc
configure:11923: checking for icc option to accept ISO C99
configure:12072: icc -c -g -O2 conftest.c >&5
conftest.c(73): error: expected a ")"
test_restrict (ccp restrict text)
^

conftest.c(78): error: expected an expression
for (unsigned int i = 0; *(text+i) != '\0'; ++i)
^

conftest.c(78): error: identifier "text" is undefined
for (unsigned int i = 0; *(text+i) != '\0'; ++i)
^

conftest.c(78): error: identifier "i" is undefined
for (unsigned int i = 0; *(text+i) != '\0'; ++i)
^

conftest.c(127): error: expected a ";"
char *restrict newvar = "Another string";
^

conftest.c(137): error: expected an expression
for (int i = 0; i < ia->datasize; ++i)
^

conftest.c(137): error: identifier "i" is undefined
for (int i = 0; i < ia->datasize; ++i)
^

conftest.c(153): error: identifier "newvar" is undefined
return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
^

compilation aborted for conftest.c (code 2)
configure:12072: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:12072: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:12072: $? = 0
configure:12092: result: -std=gnu99
configure:12109: checking for icc -std=gnu99 option to support OpenMP
configure:12124: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
conftest.c(25): error: identifier "choke" is undefined
choke me
^

/opt/intel/composer_xe_2013.1.117/compiler/include/omp.h(76): error: expected a ";"
typedef enum omp_sched_t {
^

/opt/intel/composer_xe_2013.1.117/compiler/include/omp.h(88): error: expected an identifier
extern void __KAI_KMPC_CONVENTION omp_set_schedule (omp_sched_t, int);
^

/opt/intel/composer_xe_2013.1.117/compiler/include/omp.h(104): error: identifier "omp_sched_t" is undefined
extern void __KAI_KMPC_CONVENTION omp_get_schedule (omp_sched_t *, int *);
^

compilation aborted for conftest.c (code 2)
configure:12124: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
| #ifndef _OPENMP
| choke me
| #endif
| #include <omp.h>
| int main () { return omp_get_num_threads (); }
|
configure:12141: icc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c >&5
configure:12141: $? = 0
configure:12155: result: -fopenmp
configure:12209: checking for ar
configure:12236: result: ar
configure:12393: checking for ld
configure:12420: result: /usr/bin/ld -m elf_x86_64
configure:12485: checking for nm
configure:12512: result: /usr/bin/nm -B
configure:12577: checking for ar
configure:12604: result: ar
configure:12669: checking for as
configure:12685: found /usr/bin/as
configure:12696: result: as
configure:12761: checking for dlltool
configure:12788: result: false
configure:12853: checking for objdump
configure:12880: result: objdump
configure:12945: checking for strip
configure:12972: result: strip
configure:13037: checking for ranlib
configure:13064: result: ranlib
configure:13199: checking for C++ compiler version
configure:13208: icpc --version >&5
icpc (ICC) 13.0.1 20121010
Copyright (C) 1985-2012 Intel Corporation. All rights reserved.

configure:13219: $? = 0
configure:13208: icpc -v >&5
icpc version 13.0.1 (gcc version 4.4.6 compatibility)
configure:13219: $? = 0
configure:13208: icpc -V >&5
Intel(R) C++ Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.0.1.117 Build 20121010
Copyright (C) 1985-2012 Intel Corporation. All rights reserved.

configure:13219: $? = 0
configure:13208: icpc -qversion >&5
icpc: command line warning #10006: ignoring unknown option '-qversion'
icpc: command line error: no files specified; for help type "icpc -help"
configure:13219: $? = 1
configure:13223: checking whether we are using the GNU C++ compiler
configure:13242: icpc -c conftest.cpp >&5
configure:13242: $? = 0
configure:13251: result: yes
configure:13260: checking whether icpc accepts -g
configure:13280: icpc -c -g conftest.cpp >&5
configure:13280: $? = 0
configure:13321: result: yes
configure:13346: checking dependency style of icpc
configure:13457: result: gcc3
configure:13490: checking how to run the C++ preprocessor
configure:13517: icpc -E conftest.cpp
configure:13517: $? = 0
configure:13531: icpc -E conftest.cpp
conftest.cpp(23): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^

configure:13531: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13556: result: icpc -E
configure:13576: icpc -E conftest.cpp
configure:13576: $? = 0
configure:13590: icpc -E conftest.cpp
conftest.cpp(23): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^

configure:13590: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13759: checking for ld used by icpc
configure:13826: result: /usr/bin/ld -m elf_x86_64
configure:13833: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13848: result: yes
configure:13903: checking whether the icpc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14908: result: yes
configure:14944: icpc -c -g -O2 conftest.cpp >&5
configure:14947: $? = 0
configure:15467: checking for icpc option to produce PIC
configure:15474: result: -fPIC -DPIC
configure:15482: checking if icpc PIC flag -fPIC -DPIC works
configure:15500: icpc -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15504: $? = 0
configure:15517: result: yes
configure:15540: checking if icpc static flag -static works
configure:15568: result: yes
configure:15580: checking if icpc supports -c -o file.o
configure:15601: icpc -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:15605: $? = 0
configure:15627: result: yes
configure:15632: checking if icpc supports -c -o file.o
configure:15679: result: yes
configure:15709: checking whether the icpc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15745: result: yes
configure:15886: checking dynamic linker characteristics
configure:16553: result: GNU/Linux ld.so
configure:16606: checking how to hardcode library paths into programs
configure:16631: result: immediate
configure:16683: checking for special C compiler options needed for large files
configure:16728: result: no
configure:16734: checking for _FILE_OFFSET_BITS value needed for large files
configure:16759: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16759: $? = 0
configure:16791: result: no
configure:16882: checking for stdlib.h
configure:16882: result: yes
configure:16882: checking for unistd.h
configure:16882: result: yes
configure:16882: checking for sys/param.h
configure:16882: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16882: $? = 0
configure:16882: result: yes
configure:16902: checking for getpagesize
configure:16902: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16902: $? = 0
configure:16902: result: yes
configure:16911: checking for working mmap
configure:17058: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:17058: $? = 0
configure:17058: ./conftest
configure:17058: $? = 0
configure:17068: result: yes
configure:17079: checking for malloc in -lmalloc
configure:17104: icc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5
ld: cannot find -lmalloc
configure:17104: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:17113: result: no
configure:17126: checking for struct stat.st_blksize
configure:17126: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17126: $? = 0
configure:17126: result: yes
configure:17140: checking sys/resource.h usability
configure:17140: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17140: $? = 0
configure:17140: result: yes
configure:17140: checking sys/resource.h presence
configure:17140: icc -E conftest.c
configure:17140: $? = 0
configure:17140: result: yes
configure:17140: checking for sys/resource.h
configure:17140: result: yes
configure:17152: checking sys/times.h usability
configure:17152: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17152: $? = 0
configure:17152: result: yes
configure:17152: checking sys/times.h presence
configure:17152: icc -E conftest.c
configure:17152: $? = 0
configure:17152: result: yes
configure:17152: checking for sys/times.h
configure:17152: result: yes
configure:17164: checking malloc.h usability
configure:17164: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17164: $? = 0
configure:17164: result: yes
configure:17164: checking malloc.h presence
configure:17164: icc -E conftest.c
configure:17164: $? = 0
configure:17164: result: yes
configure:17164: checking for malloc.h
configure:17164: result: yes
configure:17176: checking glob.h usability
configure:17176: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17176: $? = 0
configure:17176: result: yes
configure:17176: checking glob.h presence
configure:17176: icc -E conftest.c
configure:17176: $? = 0
configure:17176: result: yes
configure:17176: checking for glob.h
configure:17176: result: yes
configure:17190: checking for mallinfo
configure:17190: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:17190: $? = 0
configure:17190: result: yes
configure:17201: checking whether isnan is declared
configure:17201: icc -std=gnu99 -c -g -O2 conftest.c >&5
configure:17201: $? = 0
configure:17201: result: yes
configure:17216: checking for getrlimit
configure:17216: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:17216: $? = 0
configure:17216: result: yes
configure:17227: checking for gethostname
configure:17227: icc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:17227: $? = 0
configure:17227: result: yes
configure:17295: checking for floor in -lm
configure:17320: icc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5
configure:17320: $? = 0
configure:17329: result: yes
configure:17342: checking for DATA support
configure:17359: result: yes
configure:17503: checking if compiler needs -Werror to reject unknown flags
configure:17519: icc -std=gnu99 -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5
icc: command line warning #10006: ignoring unknown option '-Wunknown-warning-option'
icc: command line warning #10006: ignoring unknown option '-Wsizeof-array-argument'
configure:17519: $? = 0
configure:17520: result: yes
configure:17590: checking for the pthreads library -lpthreads
configure:17628: icc -std=gnu99 -o conftest -g -O2 -fopenmp -Werror conftest.c -lpthreads -lm >&5
ld: cannot find -lpthreads
configure:17628: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| static void routine(void *a) { a = 0; }
| static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
| pthread_create(&th, 0, start_routine, 0);
| pthread_join(th, 0);
| pthread_attr_init(&attr);
| pthread_cleanup_push(routine, 0);
| pthread_cleanup_pop(0) /* ; */
| ;
| return 0;
| }
configure:17637: result: no
configure:17535: checking whether pthreads work without any flags
configure:17628: icc -std=gnu99 -o conftest -g -O2 -fopenmp -Werror conftest.c -lm >&5
configure:17628: $? = 0
configure:17637: result: yes
configure:17656: checking for joinable pthread attribute
configure:17671: icc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5
configure:17671: $? = 0
configure:17677: result: PTHREAD_CREATE_JOINABLE
configure:17687: checking if more special flags are required for pthreads
configure:17702: result: no
configure:17708: checking for PTHREAD_PRIO_INHERIT
configure:17725: icc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5
conftest.c(47): error: identifier "PTHREAD_PRIO_INHERIT" is undefined
int i = PTHREAD_PRIO_INHERIT;
^

compilation aborted for conftest.c (code 2)
configure:17725: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| /* end confdefs.h. */
| #include <pthread.h>
| int
| main ()
| {
| int i = PTHREAD_PRIO_INHERIT;
| ;
| return 0;
| }
configure:17734: result: no
configure:18072: checking zlib.h usability
configure:18072: icc -std=gnu99 -c -g -O2 -fopenmp conftest.c >&5
configure:18072: $? = 0
configure:18072: result: yes
configure:18072: checking zlib.h presence
configure:18072: icc -E conftest.c
configure:18072: $? = 0
configure:18072: result: yes
configure:18072: checking for zlib.h
configure:18072: result: yes
configure:18082: checking for library containing deflate
configure:18113: icc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lm >&5
/tmp/icchhxWRA.o: In function `main':
/home/dkumar/RLIB/cdo-1.6.7/conftest.c:56: undefined reference to `deflate'
configure:18113: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:18113: icc -std=gnu99 -o conftest -g -O2 -fopenmp conftest.c -lz -lm >&5
configure:18113: $? = 0
configure:18130: result: -lz
configure:18320: checking for szlib library
configure:18322: result: suppressed
configure:18488: checking hdf5.h usability
configure:18488: icc -std=gnu99 -c -g -O2 -fopenmp -I/export/home/dkumar/RLIB/include conftest.c >&5
/export/home/dkumar/RLIB/include/H5public.h(61): catastrophic error: cannot open source file "mpi.h"
# include <mpi.h>
^

compilation aborted for conftest.c (code 4)
configure:18488: $? = 4
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <hdf5.h>
configure:18488: result: no
configure:18488: checking hdf5.h presence
configure:18488: icc -E -I/export/home/dkumar/RLIB/include conftest.c
/export/home/dkumar/RLIB/include/H5public.h(61): error #2379: cannot open source file "mpi.h"
# include <mpi.h>
^

/export/home/dkumar/RLIB/include/H5public.h(63): error #2379: cannot open source file "mpio.h"
# include <mpio.h>
^

configure:18488: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
| #include <hdf5.h>
configure:18488: result: no
configure:18488: checking for hdf5.h
configure:18488: result: no
configure:18498: checking for library containing H5Fopen
configure:18529: icc -std=gnu99 -o conftest -g -O2 -fopenmp -I/export/home/dkumar/RLIB/include -L/export/home/dkumar/RLIB/lib conftest.c -lz -lm >&5
/tmp/icc3BATe8.o: In function `main':
/home/dkumar/RLIB/cdo-1.6.7/conftest.c:57: undefined reference to `H5Fopen'
configure:18529: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:18529: icc -std=gnu99 -o conftest -g -O2 -fopenmp -I/export/home/dkumar/RLIB/include -L/export/home/dkumar/RLIB/lib conftest.c -lhdf5 -lz -lm >&5
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o): In function `H5Zregister':
H5Z.c:(.text+0x2bb): undefined reference to `SZ_encoder_enabled'
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o): In function `H5Zunregister':
H5Z.c:(.text+0x704): undefined reference to `SZ_encoder_enabled'
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o): In function `H5Z_unregister':
H5Z.c:(.text+0xce9): undefined reference to `SZ_encoder_enabled'
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o): In function `H5Zfilter_avail':
H5Z.c:(.text+0x1501): undefined reference to `SZ_encoder_enabled'
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o): In function `H5Z_filter_avail':
H5Z.c:(.text+0x1851): undefined reference to `SZ_encoder_enabled'
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Z.o):H5Z.c:(.text+0x1ba7): more undefined references to `SZ_encoder_enabled' follow
/export/home/dkumar/RLIB/lib/libhdf5.a(H5Zszip.o): In function `H5Z_filter_szip':
H5Zszip.c:(.text+0x865): undefined reference to `SZ_BufftoBuffDecompress'
H5Zszip.c:(.text+0x969): undefined reference to `SZ_BufftoBuffCompress'
configure:18529: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.7"
| #define PACKAGE_STRING "cdo 1.6.7"
| #define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.7"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "icc (ICC) 13.0.1 20121010"
| #define USER_NAME "dkumar"
| #define HOST_NAME "weather.jnu.ac.in"
| #define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:18546: result: no
configure:18555: error: Cannot link to hdf5! It is required for netCDF4.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=icc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=icpc
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_hdf5_h=no
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='icc -E'
ac_cv_prog_CXXCPP='icpc -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=icc
ac_cv_prog_ac_ct_DLLTOOL=false
ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64'
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_c_openmp=-fopenmp
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5Fopen=no
ac_cv_search_deflate=-lz
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_PTHREAD_PRIO_INHERIT=no
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=yes
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1966080
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/missing aclocal-1.14'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/missing autoconf'
AUTOHEADER='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/missing autoheader'
AUTOMAKE='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/missing automake-1.14'
AWK='gawk'
BUILD_AVX2_TESTS_FALSE=''
BUILD_AVX2_TESTS_TRUE=''
BUILD_AVX_TESTS_FALSE=''
BUILD_AVX_TESTS_TRUE=''
BUILD_SSE42_TESTS_FALSE=''
BUILD_SSE42_TESTS_TRUE=''
CC='icc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -fopenmp '
CLDFLAGS=''
CLIBS=''
CPP='icc -E'
CPPFLAGS='-I/export/home/dkumar/RLIB/include '
CURL_INCLUDE=''
CURL_LDFLAGS=''
CXX='icpc'
CXXCPP='icpc -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX=''
ENABLE_DATA='yes'
ENABLE_EXTRA=''
ENABLE_GRIB=''
ENABLE_GRIBAPI=''
ENABLE_IEG=''
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_NC2=''
ENABLE_NC4=''
ENABLE_NETCDF=''
ENABLE_SERVICE=''
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=''
GRIB_API_LIBS=''
HDF5_INCLUDE=''
HDF5_LIBS=''
HDF5_ROOT='/export/home/dkumar/RLIB'
HOST_NAME='weather.jnu.ac.in'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=''
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-L/export/home/dkumar/RLIB/lib '
LIBOBJS=''
LIBS='-lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG=''
NETCDF_INCLUDE=''
NETCDF_LIBS=''
NETCDF_ROOT=''
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='https://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.6.7'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.6.7'
PATH_SEPARATOR=':'
PROJ_INCLUDE=''
PROJ_LDFLAGS=''
PTHREAD_CC='icc -std=gnu99'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='x86_64-unknown-linux-gnu'
SZLIB_INCLUDE=''
SZLIB_LIBS=''
THREADS_INCLUDE=''
THREADS_LIBS=''
UDUNITS_INCLUDE=''
UDUNITS_LDFLAGS=''
USER_NAME='dkumar'
VERSION='1.6.7'
XML2_LIBS=''
ZLIB_INCLUDE=''
ZLIB_LIBS=' -lz'
ac_ct_AR='ar'
ac_ct_CC='icc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/dkumar/RLIB/cdo-1.6.7/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/export/home/dkumar/RLIB'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.6.7"
#define PACKAGE_STRING "cdo 1.6.7"
#define PACKAGE_BUGREPORT "https://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.6.7"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_MALLINFO 1
#define HAVE_DECL_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "icc (ICC) 13.0.1 20121010"
#define USER_NAME "dkumar"
#define HOST_NAME "weather.jnu.ac.in"
#define SYSTEM_TYPE "x86_64-unknown-linux-gnu"
#define HAVE_LIBM 1
#define ENABLE_DATA 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1

configure: exit 1
    (1-1/1)