This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.4.6, which was generated by GNU Autoconf 2.66. Invocation command line was $ ./configure --with-netcdf=/Users/navarro/Software/netcdf ## --------- ## ## Platform. ## ## --------- ## hostname = eduroam_um-230-85.inf.um.es uname -m = i386 uname -r = 9.8.0 uname -s = Darwin uname -v = Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 Kernel configured for up to 2 processors. 2 processors are physically available. 2 processors are logically available. Processor type: i486 (Intel 80486) Processors active: 0 1 Primary memory available: 2.00 gigabytes Default processor set: 55 tasks, 214 threads, 2 processors Load average: 0.42, Mach factor: 1.56 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/local/bin PATH: /opt/local/sbin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /usr/local/bin PATH: /usr/texbin PATH: /usr/X11/bin PATH: /Users/navarro/Software/cdo-1.4.0/src PATH: /Users/navarro/Software/pingo_1.6/bin PATH: /sw/bin PATH: /Users/navarro/Software/grads-2.0.a7.1/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2477: checking build system type configure:2491: result: i386-apple-darwin9.8.0 configure:2511: checking host system type configure:2524: result: i386-apple-darwin9.8.0 configure:2562: checking for a BSD-compatible install configure:2630: result: /usr/bin/install -c configure:2641: checking whether build environment is sane configure:2691: result: yes configure:2832: checking for a thread-safe mkdir -p configure:2871: result: config/install-sh -c -d configure:2884: checking for gawk configure:2914: result: no configure:2884: checking for mawk configure:2914: result: no configure:2884: checking for nawk configure:2914: result: no configure:2884: checking for awk configure:2900: found /usr/bin/awk configure:2911: result: awk configure:2922: checking whether make sets $(MAKE) configure:2944: result: yes configure:3028: setting up libtool configure:3076: checking how to print strings configure:3103: result: printf configure:3136: checking for style of include used by make configure:3164: result: GNU configure:3234: checking for gcc configure:3250: found /usr/bin/gcc configure:3261: result: gcc configure:3490: checking for C compiler version configure:3499: gcc --version >&5 i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465) Copyright (C) 2005 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3510: $? = 0 configure:3499: gcc -v >&5 Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465) configure:3510: $? = 0 configure:3499: gcc -V >&5 gcc-4.0: argument to `-V' is missing configure:3510: $? = 1 configure:3499: gcc -qversion >&5 i686-apple-darwin9-gcc-4.0.1: no input files configure:3510: $? = 1 configure:3530: checking whether the C compiler works configure:3552: gcc conftest.c >&5 configure:3556: $? = 0 configure:3604: result: yes configure:3607: checking for C compiler default output file name configure:3609: result: a.out configure:3615: checking for suffix of executables configure:3622: gcc -o conftest conftest.c >&5 configure:3626: $? = 0 configure:3648: result: configure:3670: checking whether we are cross compiling configure:3678: gcc -o conftest conftest.c >&5 configure:3682: $? = 0 configure:3689: ./conftest configure:3693: $? = 0 configure:3708: result: no configure:3713: checking for suffix of object files configure:3735: gcc -c conftest.c >&5 configure:3739: $? = 0 configure:3760: result: o configure:3764: checking whether we are using the GNU C compiler configure:3783: gcc -c conftest.c >&5 configure:3783: $? = 0 configure:3792: result: yes configure:3801: checking whether gcc accepts -g configure:3821: gcc -c -g conftest.c >&5 configure:3821: $? = 0 configure:3862: result: yes configure:3879: checking for gcc option to accept ISO C89 configure:3943: gcc -c -g -O2 conftest.c >&5 configure:3943: $? = 0 configure:3956: result: none needed configure:3978: checking dependency style of gcc configure:4088: result: gcc3 configure:4103: checking for a sed that does not truncate output configure:4167: result: /usr/bin/sed configure:4185: checking for grep that handles long lines and -e configure:4243: result: /usr/bin/grep configure:4248: checking for egrep configure:4310: result: /usr/bin/grep -E configure:4315: checking for fgrep configure:4377: result: /usr/bin/grep -F configure:4412: checking for ld used by gcc configure:4479: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld configure:4486: checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) is GNU ld configure:4501: result: no configure:4513: checking for BSD- or MS-compatible name lister (nm) configure:4562: result: /usr/bin/nm -p configure:4692: checking the name lister (/usr/bin/nm -p) interface configure:4699: gcc -c -g -O2 conftest.c >&5 configure:4702: /usr/bin/nm -p "conftest.o" configure:4705: output 00000168 D _some_variable configure:4712: result: BSD nm configure:4715: checking whether ln -s works configure:4719: result: yes configure:4727: checking the maximum length of command line arguments configure:4852: result: 196608 configure:4869: checking whether the shell understands some XSI constructs configure:4879: result: yes configure:4883: checking whether the shell understands "+=" configure:4889: result: yes configure:4924: checking for /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld option to reload object files configure:4931: result: -r configure:5000: checking for objdump configure:5030: result: no configure:5059: checking how to recognize dependent libraries configure:5261: result: pass_all configure:5321: checking for ar configure:5337: found /usr/bin/ar configure:5348: result: ar configure:5426: checking for strip configure:5442: found /usr/bin/strip configure:5453: result: strip configure:5525: checking for ranlib configure:5541: found /usr/bin/ranlib configure:5552: result: ranlib configure:5654: checking command to parse /usr/bin/nm -p output from gcc object configure:5772: gcc -c -g -O2 conftest.c >&5 configure:5775: $? = 0 configure:5779: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5782: $? = 0 cannot find nm_test_var in conftest.nm configure:5772: gcc -c -g -O2 conftest.c >&5 configure:5775: $? = 0 configure:5779: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' \> conftest.nm configure:5782: $? = 0 configure:5836: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:5839: $? = 0 configure:5877: result: ok configure:6142: checking for dsymutil configure:6158: found /usr/bin/dsymutil configure:6169: result: dsymutil configure:6234: checking for nmedit configure:6250: found /usr/bin/nmedit configure:6261: result: nmedit configure:6326: checking for lipo configure:6342: found /usr/bin/lipo configure:6353: result: lipo configure:6418: checking for otool configure:6434: found /usr/bin/otool configure:6445: result: otool configure:6510: checking for otool64 configure:6540: result: no configure:6585: checking for -single_module linker flag gcc -g -O2 -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:6612: result: yes configure:6614: checking for -exported_symbols_list linker flag configure:6634: gcc -o conftest -g -O2 -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 configure:6634: $? = 0 configure:6644: result: yes configure:6646: checking for -force_load linker flag gcc -g -O2 -c -o conftest.o conftest.c ar cru libconftest.a conftest.o ranlib libconftest.a gcc -g -O2 -o conftest conftest.c -Wl,-force_load,./libconftest.a ld: unknown option: -force_load collect2: ld returned 1 exit status configure:6676: result: no configure:6718: checking how to run the C preprocessor configure:6749: gcc -E conftest.c configure:6749: $? = 0 configure:6763: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6763: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | /* end confdefs.h. */ | #include configure:6788: result: gcc -E configure:6808: gcc -E conftest.c configure:6808: $? = 0 configure:6822: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6822: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | /* end confdefs.h. */ | #include configure:6851: checking for ANSI C header files configure:6871: gcc -c -g -O2 conftest.c >&5 configure:6871: $? = 0 configure:6944: gcc -o conftest -g -O2 conftest.c >&5 configure:6944: $? = 0 configure:6944: ./conftest configure:6944: $? = 0 configure:6955: result: yes configure:6968: checking for sys/types.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for sys/stat.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for stdlib.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for string.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for memory.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for strings.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for inttypes.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for stdint.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6968: checking for unistd.h configure:6968: gcc -c -g -O2 conftest.c >&5 configure:6968: $? = 0 configure:6968: result: yes configure:6982: checking for dlfcn.h configure:6982: gcc -c -g -O2 conftest.c >&5 configure:6982: $? = 0 configure:6982: result: yes configure:7169: checking for objdir configure:7184: result: .libs configure:7455: checking if gcc supports -fno-rtti -fno-exceptions configure:7473: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:7477: $? = 0 configure:7490: result: no configure:7510: checking for gcc option to produce PIC configure:7795: result: -fno-common -DPIC configure:7807: checking if gcc PIC flag -fno-common -DPIC works configure:7825: gcc -c -g -O2 -fno-common -DPIC -DPIC conftest.c >&5 configure:7829: $? = 0 configure:7842: result: yes configure:7866: checking if gcc static flag -static works configure:7894: result: no configure:7909: checking if gcc supports -c -o file.o configure:7930: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:7934: $? = 0 configure:7956: result: yes configure:7964: checking if gcc supports -c -o file.o configure:8011: result: yes configure:8044: checking whether the gcc linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries configure:9119: result: yes configure:9364: checking dynamic linker characteristics configure:10041: result: darwin9.8.0 dyld configure:10148: checking how to hardcode library paths into programs configure:10173: result: immediate configure:10713: checking whether stripping libraries is possible configure:10727: result: yes configure:10753: checking if libtool supports shared libraries configure:10755: result: yes configure:10758: checking whether to build shared libraries configure:10779: result: yes configure:10782: checking whether to build static libraries configure:10786: result: yes configure:10865: checking for gcc configure:10892: result: gcc configure:10914: checking for gcc option to accept ISO C99 configure:11063: gcc -c -g -O2 conftest.c >&5 conftest.c:73: error: syntax error before 'text' conftest.c: In function 'test_restrict': conftest.c:78: error: 'for' loop initial declaration used outside C99 mode conftest.c:78: error: 'text' undeclared (first use in this function) conftest.c:78: error: (Each undeclared identifier is reported only once conftest.c:78: error: for each function it appears in.) conftest.c: In function 'main': conftest.c:127: error: nested functions are disabled, use -fnested-functions to re-enable conftest.c:127: error: syntax error before 'newvar' conftest.c:137: error: 'for' loop initial declaration used outside C99 mode conftest.c:153: error: 'newvar' undeclared (first use in this function) configure:11063: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11063: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11063: $? = 0 configure:11083: result: -std=gnu99 configure:11092: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11123: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11127: $? = 0 configure:11133: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11137: $? = 0 configure:11148: cc -c conftest.c >&5 configure:11152: $? = 0 configure:11160: cc -c conftest.c -o conftest2.o >&5 configure:11164: $? = 0 configure:11170: cc -c conftest.c -o conftest2.o >&5 configure:11174: $? = 0 configure:11192: result: yes configure:11261: checking for ar configure:11288: result: ar configure:11445: checking for ld configure:11472: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld configure:11537: checking for nm configure:11564: result: /usr/bin/nm -p configure:11629: checking for ar configure:11656: result: ar configure:11721: checking for as configure:11737: found /usr/bin/as configure:11748: result: as configure:11813: checking for dlltool configure:11843: result: no configure:11905: checking for objdump configure:11932: result: false configure:11997: checking for strip configure:12024: result: strip configure:12089: checking for ranlib configure:12116: result: ranlib configure:12197: checking for g++ configure:12213: found /usr/bin/g++ configure:12224: result: g++ configure:12251: checking for C++ compiler version configure:12260: g++ --version >&5 i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465) Copyright (C) 2005 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12271: $? = 0 configure:12260: g++ -v >&5 Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465) configure:12271: $? = 0 configure:12260: g++ -V >&5 g++-4.0: argument to `-V' is missing configure:12271: $? = 1 configure:12260: g++ -qversion >&5 i686-apple-darwin9-g++-4.0.1: no input files configure:12271: $? = 1 configure:12275: checking whether we are using the GNU C++ compiler configure:12294: g++ -c conftest.cpp >&5 configure:12294: $? = 0 configure:12303: result: yes configure:12312: checking whether g++ accepts -g configure:12332: g++ -c -g conftest.cpp >&5 configure:12332: $? = 0 configure:12373: result: yes configure:12398: checking dependency style of g++ configure:12508: result: gcc3 configure:12531: checking how to run the C++ preprocessor configure:12558: g++ -E conftest.cpp configure:12558: $? = 0 configure:12572: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12572: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12597: result: g++ -E configure:12617: g++ -E conftest.cpp configure:12617: $? = 0 configure:12631: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12631: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12799: checking for ld used by g++ configure:12866: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld configure:12873: checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) is GNU ld configure:12888: result: no configure:12943: checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries configure:13875: result: yes configure:13903: g++ -c -g -O2 conftest.cpp >&5 configure:13906: $? = 0 configure:14088: checking for g++ option to produce PIC configure:14410: result: -fno-common -DPIC configure:14419: checking if g++ PIC flag -fno-common -DPIC works configure:14437: g++ -c -g -O2 -fno-common -DPIC -DPIC conftest.cpp >&5 configure:14441: $? = 0 configure:14454: result: yes configure:14475: checking if g++ static flag -static works configure:14503: result: no configure:14515: checking if g++ supports -c -o file.o configure:14536: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14540: $? = 0 configure:14562: result: yes configure:14567: checking if g++ supports -c -o file.o configure:14614: result: yes configure:14644: checking whether the g++ linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries configure:14672: result: yes configure:14815: checking dynamic linker characteristics configure:15426: result: darwin9.8.0 dyld configure:15479: checking how to hardcode library paths into programs configure:15504: result: immediate configure:15552: checking for special C compiler options needed for large files configure:15597: result: no configure:15603: checking for _FILE_OFFSET_BITS value needed for large files configure:15628: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15628: $? = 0 configure:15660: result: no configure:15751: checking for stdlib.h configure:15751: result: yes configure:15751: checking for unistd.h configure:15751: result: yes configure:15751: checking for sys/param.h configure:15751: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15751: $? = 0 configure:15751: result: yes configure:15771: checking for getpagesize configure:15771: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15771: $? = 0 configure:15771: result: yes configure:15780: checking for working mmap configure:15927: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15927: $? = 0 configure:15927: ./conftest configure:15927: $? = 0 configure:15937: result: yes configure:15948: checking for malloc in -lmalloc configure:15973: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:35: warning: conflicting types for built-in function 'malloc' ld: library not found for -lmalloc collect2: ld returned 1 exit status configure:15973: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:15982: result: no configure:15995: checking for struct stat.st_blksize configure:15995: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15995: $? = 0 configure:15995: result: yes configure:16009: checking sys/resource.h usability configure:16009: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16009: $? = 0 configure:16009: result: yes configure:16009: checking sys/resource.h presence configure:16009: gcc -E conftest.c configure:16009: $? = 0 configure:16009: result: yes configure:16009: checking for sys/resource.h configure:16009: result: yes configure:16021: checking sys/times.h usability configure:16021: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16021: $? = 0 configure:16021: result: yes configure:16021: checking sys/times.h presence configure:16021: gcc -E conftest.c configure:16021: $? = 0 configure:16021: result: yes configure:16021: checking for sys/times.h configure:16021: result: yes configure:16033: checking malloc.h usability configure:16033: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c:64:20: error: malloc.h: No such file or directory configure:16033: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:16033: result: no configure:16033: checking malloc.h presence configure:16033: gcc -E conftest.c conftest.c:31:20: error: malloc.h: No such file or directory configure:16033: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include configure:16033: result: no configure:16033: checking for malloc.h configure:16033: result: no configure:16047: checking for mallinfo configure:16047: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 Undefined symbols: "_mallinfo", referenced from: _main in ccyKdUUA.o ld: symbol(s) not found collect2: ld returned 1 exit status configure:16047: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | /* Define mallinfo to an innocuous variant, in case declares mallinfo. | For example, HP-UX 11i declares gettimeofday. */ | #define mallinfo innocuous_mallinfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char mallinfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef mallinfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mallinfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_mallinfo || defined __stub___mallinfo | choke me | #endif | | int | main () | { | return mallinfo (); | ; | return 0; | } configure:16047: result: no configure:16060: checking for isnan configure:16060: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 conftest.c:54: warning: conflicting types for built-in function 'isnan' configure:16060: $? = 0 configure:16060: result: yes configure:16071: checking for getrlimit configure:16071: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16071: $? = 0 configure:16071: result: yes configure:16082: checking for gethostname configure:16082: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16082: $? = 0 configure:16082: result: yes configure:16156: checking for floor in -lm configure:16181: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 conftest.c:46: warning: conflicting types for built-in function 'floor' configure:16181: $? = 0 configure:16190: result: yes configure:16225: checking pthread.h usability configure:16225: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16225: $? = 0 configure:16225: result: yes configure:16225: checking pthread.h presence configure:16225: gcc -E conftest.c configure:16225: $? = 0 configure:16225: result: yes configure:16225: checking for pthread.h configure:16225: result: yes configure:16235: checking for pthread_create in -lpthread configure:16260: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthread -lm >&5 configure:16260: $? = 0 configure:16269: result: yes configure:16518: checking zlib.h usability configure:16518: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16518: $? = 0 configure:16518: result: yes configure:16518: checking zlib.h presence configure:16518: gcc -E conftest.c configure:16518: $? = 0 configure:16518: result: yes configure:16518: checking for zlib.h configure:16518: result: yes configure:16528: checking for library containing deflate configure:16559: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthread -lm >&5 Undefined symbols: "_deflate", referenced from: _main in ccHimhFB.o ld: symbol(s) not found collect2: ld returned 1 exit status configure:16559: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)" | #define USER_NAME "navarro" | #define HOST_NAME "eduroam_um-230-85.inf.um.es" | #define SYSTEM_TYPE "i386-apple-darwin9.8.0" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16559: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lz -lpthread -lm >&5 configure:16559: $? = 0 configure:16576: result: -lz configure:16767: checking for szlib library configure:16769: result: suppressed configure:17086: checking for hdf5 library configure:17088: result: suppressed configure:17187: checking netcdf.h usability configure:17187: gcc -std=gnu99 -c -g -O2 -I/Users/navarro/Software/netcdf/include conftest.c >&5 configure:17187: $? = 0 configure:17187: result: yes configure:17187: checking netcdf.h presence configure:17187: gcc -E -I/Users/navarro/Software/netcdf/include conftest.c configure:17187: $? = 0 configure:17187: result: yes configure:17187: checking for netcdf.h configure:17187: result: yes configure:17197: checking for library containing nc_open configure:17228: gcc -std=gnu99 -o conftest -g -O2 -I/Users/navarro/Software/netcdf/include -L/Users/navarro/Software/netcdf/lib conftest.c -lz -lpthread -lm >&5 Undefined symbols: "_nc_open", referenced from: _main in ccLDwPXl.o ld: symbol(s) not found collect2: ld returned 1 exit status configure:17228: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)" | #define USER_NAME "navarro" | #define HOST_NAME "eduroam_um-230-85.inf.um.es" | #define SYSTEM_TYPE "i386-apple-darwin9.8.0" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17228: gcc -std=gnu99 -o conftest -g -O2 -I/Users/navarro/Software/netcdf/include -L/Users/navarro/Software/netcdf/lib conftest.c -lnetcdf -lz -lpthread -lm >&5 Undefined symbols: "_curl_easy_strerror", referenced from: _ocsetcurlproperties in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) "_curl_easy_perform", referenced from: _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) "_curl_easy_setopt", referenced from: _occurlopen in libnetcdf.a(liboc_la-http.o) _occurlopen in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) _set_user_password in libnetcdf.a(liboc_la-curlfunctions.o) _set_user_password in libnetcdf.a(liboc_la-curlfunctions.o) _set_proxy in libnetcdf.a(liboc_la-curlfunctions.o) _set_proxy in libnetcdf.a(liboc_la-curlfunctions.o) _set_proxy in libnetcdf.a(liboc_la-curlfunctions.o) _set_cookies in libnetcdf.a(liboc_la-curlfunctions.o) _set_cookies in libnetcdf.a(liboc_la-curlfunctions.o) _set_verify in libnetcdf.a(liboc_la-curlfunctions.o) _set_verify in libnetcdf.a(liboc_la-curlfunctions.o) "_curl_easy_cleanup", referenced from: _occurlclose in libnetcdf.a(liboc_la-http.o) "_curl_easy_init", referenced from: _occurlopen in libnetcdf.a(liboc_la-http.o) "_curl_version_info", referenced from: _ocopen in libnetcdf.a(liboc_la-ocinternal.o) "_curl_easy_getinfo", referenced from: _ocfetchhttpcode in libnetcdf.a(liboc_la-http.o) _ocfetchurl in libnetcdf.a(liboc_la-http.o) _ocfetchurl_file in libnetcdf.a(liboc_la-http.o) _ocfetchlastmodified in libnetcdf.a(liboc_la-http.o) ld: symbol(s) not found collect2: ld returned 1 exit status configure:17228: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.4.6" | #define PACKAGE_STRING "cdo 1.4.6" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.4.6" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)" | #define USER_NAME "navarro" | #define HOST_NAME "eduroam_um-230-85.inf.um.es" | #define SYSTEM_TYPE "i386-apple-darwin9.8.0" | #define HAVE_LIBM 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17245: result: no configure:17254: error: Could not link to netcdf library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i386-apple-darwin9.8.0 ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_isnan=yes ac_cv_func_mallinfo=no ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=no ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=i386-apple-darwin9.8.0 ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_LD=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NM='/usr/bin/nm -p' ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OBJDUMP=false ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_deflate=-lz ac_cv_search_nc_open=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_apple_cc_single_mod=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_force_load=no lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld lt_cv_path_LDCXX=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld lt_cv_path_NM='/usr/bin/nm -p' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=196608 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run autoconf' AUTOHEADER='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run autoheader' AUTOMAKE='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run automake-1.11' AWK='awk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS=' -I/Users/navarro/Software/netcdf/include' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL=':' DSYMUTIL='dsymutil' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_GRIB='' ENABLE_IEG='' ENABLE_SERVICE='' EXEEXT='' FCFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LDFLAGS='' HDF5_INCLUDE='' HDF5_LDFLAGS='' HOST_NAME='eduroam_um-230-85.inf.um.es' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LDFLAGS='' LD='/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld' LDFLAGS=' -L/Users/navarro/Software/netcdf/lib' LIBOBJS='' LIBS='-lz -lpthread -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/missing --run makeinfo' MKDIR_P='config/install-sh -c -d' NETCDF_INCLUDE='' NETCDF_LDFLAGS='' NM='/usr/bin/nm -p' NMEDIT='nmedit' OBJDUMP='false' OBJEXT='o' OTOOL64=':' OTOOL='otool' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.4.6' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.4.6' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='i386-apple-darwin9.8.0' SZLIB_INCLUDE='' SZLIB_LDFLAGS='' THREADS_INCLUDE='' THREADS_LDFLAGS=' -lpthread' USER_NAME='navarro' VERSION='1.4.6' ZLIB_LDFLAGS=' -lz' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='i386-apple-darwin9.8.0' build_alias='' build_cpu='i386' build_os='darwin9.8.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='i386-apple-darwin9.8.0' host_alias='' host_cpu='i386' host_os='darwin9.8.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/navarro/Software/cdo-1.4.6/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(top_builddir)/config/install-sh -c -d' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.4.6" #define PACKAGE_STRING "cdo 1.4.6" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.4.6" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMPILER "gcc -std=gnu99 -g -O2" #define COMP_VERSION "i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)" #define USER_NAME "navarro" #define HOST_NAME "eduroam_um-230-85.inf.um.es" #define SYSTEM_TYPE "i386-apple-darwin9.8.0" #define HAVE_LIBM 1 #define HAVE_PTHREAD_H 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_NETCDF_H 1 configure: exit 1