This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 2.1.1, which was generated by GNU Autoconf 2.71. Invocation command line was $ ./configure --prefix=/opt/ohpc/pub/libs/intel-openmpi4/cdo/2.1.1 --with-netcdf=/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0 --with-hdf5=/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8 CC=mpicc CXX=mpicxx F77=mpif77 ## --------- ## ## Platform. ## ## --------- ## hostname = node-r6-he39.bgc-jena.mpg.de uname -m = x86_64 uname -r = 4.18.0-147.8.1.el8_1.x86_64 uname -s = Linux uname -v = #1 SMP Thu Apr 9 13:49:54 UTC 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/bin/ PATH: /opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/bin/ PATH: /opt/ohpc/pub/mpi/libfabric/1.13.0/bin/ PATH: /opt/ohpc/pub/mpi/ucx-ohpc/1.11.2/bin/ PATH: /opt/ohpc/pub/libs/hwloc/bin/ PATH: /opt/ohpc/pub/mpi/openmpi4-intel/4.1.4/bin/ PATH: /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64/ PATH: /opt/intel/oneapi/compiler/2022.1.0/linux/bin/ PATH: /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin/ PATH: /usr/local/sbin/ PATH: /usr/local/bin/ PATH: /usr/sbin/ PATH: /usr/bin/ PATH: /root/bin/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:3314: looking for aux files: tap-driver.sh ltmain.sh compile ar-lib missing install-sh config.guess config.sub configure:3327: trying ./config/ configure:3356: ./config/tap-driver.sh found configure:3356: ./config/ltmain.sh found configure:3356: ./config/compile found configure:3356: ./config/ar-lib found configure:3356: ./config/missing found configure:3338: ./config/install-sh found configure:3356: ./config/config.guess found configure:3356: ./config/config.sub found configure:3482: checking build system type configure:3497: result: x86_64-pc-linux-gnu configure:3517: checking host system type configure:3531: result: x86_64-pc-linux-gnu configure:3571: checking for a BSD-compatible install configure:3644: result: /usr/bin/install -c configure:3655: checking whether build environment is sane configure:3710: result: yes configure:3869: checking for a race-free mkdir -p configure:3913: result: /usr/bin/mkdir -p configure:3920: checking for gawk configure:3941: found /usr/bin/gawk configure:3952: result: gawk configure:3963: checking whether make sets $(MAKE) configure:3986: result: yes configure:4016: checking whether make supports nested variables configure:4034: result: yes configure:4174: checking whether to enable maintainer-specific portions of Makefiles configure:4184: result: no configure:4212: checking whether make supports the include directive configure:4227: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:4230: $? = 0 configure:4249: result: yes (GNU style) configure:4325: checking for gcc configure:4357: result: mpicc configure:4710: checking for C compiler version configure:4719: mpicc --version >&5 icc (ICC) 2021.6.0 20220226 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:4730: $? = 0 configure:4719: mpicc -v >&5 icc version 2021.6.0 (gcc version 8.3.1 compatibility) configure:4730: $? = 0 configure:4719: mpicc -V >&5 Intel(R) C Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:4730: $? = 0 configure:4719: mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' icc: command line error: no files specified; for help type "icc -help" configure:4730: $? = 1 configure:4719: mpicc -version >&5 icc: command line warning #10006: ignoring unknown option '-version' icc: command line error: no files specified; for help type "icc -help" configure:4730: $? = 1 configure:4750: checking whether the C compiler works configure:4772: mpicc conftest.c >&5 configure:4776: $? = 0 configure:4826: result: yes configure:4829: checking for C compiler default output file name configure:4831: result: a.out configure:4837: checking for suffix of executables configure:4844: mpicc -o conftest conftest.c >&5 configure:4848: $? = 0 configure:4871: result: configure:4893: checking whether we are cross compiling configure:4901: mpicc -o conftest conftest.c >&5 configure:4905: $? = 0 configure:4912: ./conftest configure:4916: $? = 0 configure:4931: result: no configure:4936: checking for suffix of object files configure:4959: mpicc -c conftest.c >&5 configure:4963: $? = 0 configure:4985: result: o configure:4989: checking whether the compiler supports GNU C configure:5009: mpicc -c conftest.c >&5 configure:5009: $? = 0 configure:5019: result: yes configure:5030: checking whether mpicc accepts -g configure:5051: mpicc -c -g conftest.c >&5 configure:5051: $? = 0 configure:5095: result: yes configure:5115: checking for mpicc option to enable C11 features configure:5130: mpicc -c -g -O2 conftest.c >&5 configure:5130: $? = 0 configure:5148: result: none needed configure:5264: checking whether mpicc understands -c and -o together configure:5287: mpicc -c conftest.c -o conftest2.o configure:5290: $? = 0 configure:5287: mpicc -c conftest.c -o conftest2.o configure:5290: $? = 0 configure:5302: result: yes configure:5321: checking dependency style of mpicc configure:5433: result: gcc3 configure:5504: checking for ar configure:5525: found /usr/bin/ar configure:5536: result: ar configure:5562: checking the archiver (ar) interface configure:5579: mpicc -c -g -O2 conftest.c >&5 configure:5579: $? = 0 configure:5582: ar cru libconftest.a conftest.o >&5 configure:5585: $? = 0 configure:5613: result: ar configure:5634: setting up libtool configure:5683: checking how to print strings configure:5710: result: printf configure:5731: checking for a sed that does not truncate output configure:5801: result: /usr/bin/sed configure:5819: checking for grep that handles long lines and -e configure:5883: result: /usr/bin/grep configure:5888: checking for egrep configure:5956: result: /usr/bin/grep -E configure:5961: checking for fgrep configure:6029: result: /usr/bin/grep -F configure:6065: checking for ld used by mpicc configure:6133: result: /usr/bin/ld configure:6140: checking if the linker (/usr/bin/ld) is GNU ld configure:6156: result: yes configure:6168: checking for BSD- or MS-compatible name lister (nm) configure:6223: result: /usr/bin/nm -B configure:6363: checking the name lister (/usr/bin/nm -B) interface configure:6371: mpicc -c -g -O2 conftest.c >&5 configure:6374: /usr/bin/nm -B "conftest.o" configure:6377: output 0000000000000000 N .debug_info_seg 0000000000000000 B some_variable configure:6384: result: BSD nm configure:6387: checking whether ln -s works configure:6391: result: yes configure:6399: checking the maximum length of command line arguments configure:6531: result: 1572864 configure:6579: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:6620: result: func_convert_file_noop configure:6627: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:6648: result: func_convert_file_noop configure:6655: checking for /usr/bin/ld option to reload object files configure:6663: result: -r configure:6742: checking for file configure:6763: found /usr/bin/file configure:6774: result: file configure:6850: checking for objdump configure:6871: found /usr/bin/objdump configure:6882: result: objdump configure:6914: checking how to recognize dependent libraries configure:7115: result: pass_all configure:7205: checking for dlltool configure:7240: result: no configure:7270: checking how to associate runtime and link libraries configure:7298: result: printf %s\n configure:7448: checking for archiver @FILE support configure:7466: mpicc -c -g -O2 conftest.c >&5 configure:7466: $? = 0 configure:7470: ar cr libconftest.a @conftest.lst >&5 configure:7473: $? = 0 configure:7478: ar cr libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:7481: $? = 1 configure:7493: result: @ configure:7556: checking for strip configure:7577: found /usr/bin/strip configure:7588: result: strip configure:7665: checking for ranlib configure:7686: found /usr/bin/ranlib configure:7697: result: ranlib configure:7799: checking command to parse /usr/bin/nm -B output from mpicc object configure:7953: mpicc -c -g -O2 conftest.c >&5 configure:7956: $? = 0 configure:7960: /usr/bin/nm -B conftest.o \| /usr/bin/sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | /usr/bin/sed '/ __gnu_lto/d' \> conftest.nm configure:7963: $? = 0 configure:8029: mpicc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:8032: $? = 0 configure:8070: result: ok configure:8117: checking for sysroot configure:8148: result: no configure:8155: checking for a working dd configure:8199: result: /usr/bin/dd configure:8203: checking how to truncate binary pipes configure:8219: result: /usr/bin/dd bs=4096 count=1 configure:8356: mpicc -c -g -O2 conftest.c >&5 configure:8359: $? = 0 configure:8556: checking for mt configure:8591: result: no configure:8611: checking if : is a manifest tool configure:8618: : '-?' configure:8626: result: no configure:9351: checking for stdio.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for stdlib.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for string.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for inttypes.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for stdint.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for strings.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for sys/stat.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for sys/types.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for unistd.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9351: checking for sys/param.h configure:9351: mpicc -c -g -O2 conftest.c >&5 configure:9351: $? = 0 configure:9351: result: yes configure:9376: checking for dlfcn.h configure:9376: mpicc -c -g -O2 conftest.c >&5 configure:9376: $? = 0 configure:9376: result: yes configure:9635: checking for objdir configure:9651: result: .libs configure:9915: checking if mpicc supports -fno-rtti -fno-exceptions configure:9934: mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 configure:9938: $? = 0 configure:9951: result: yes configure:10309: checking for mpicc option to produce PIC configure:10317: result: -fPIC -DPIC configure:10325: checking if mpicc PIC flag -fPIC -DPIC works configure:10344: mpicc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:10348: $? = 0 configure:10361: result: yes configure:10390: checking if mpicc static flag -static works configure:10419: result: no configure:10434: checking if mpicc supports -c -o file.o configure:10456: mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:10460: $? = 0 configure:10482: result: yes configure:10490: checking if mpicc supports -c -o file.o configure:10538: result: yes configure:10571: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11839: result: yes configure:11876: checking whether -lc should be explicitly linked in configure:11885: mpicc -c -g -O2 conftest.c >&5 configure:11888: $? = 0 configure:11903: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:11906: $? = 0 configure:11920: result: no configure:12080: checking dynamic linker characteristics configure:12662: mpicc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:12662: $? = 0 configure:12901: result: GNU/Linux ld.so configure:13023: checking how to hardcode library paths into programs configure:13048: result: immediate configure:13600: checking whether stripping libraries is possible configure:13609: result: yes configure:13651: checking if libtool supports shared libraries configure:13653: result: yes configure:13656: checking whether to build shared libraries configure:13681: result: yes configure:13684: checking whether to build static libraries configure:13688: result: yes configure:13763: checking for a Python interpreter with version >= 3.6 configure:13781: python -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '3.6'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) ./configure: line 13782: python: command not found configure:13784: $? = 127 configure:13781: python2 -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '3.6'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) configure:13784: $? = 1 configure:13781: python3 -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '3.6'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) configure:13784: $? = 0 configure:13791: result: python3 configure:13799: checking for python3 configure:13822: found /usr/bin/python3 configure:13834: result: /usr/bin/python3 configure:13851: checking for python3 version configure:13859: result: 3.6 configure:13864: checking for python3 platform configure:13872: result: linux configure:13933: checking for GNU default python3 prefix configure:13935: result: ${prefix} configure:14001: checking for GNU default python3 exec_prefix configure:14003: result: ${exec_prefix} configure:14034: checking for python3 script directory (pythondir) configure:14069: result: ${PYTHON_PREFIX}/lib/python3.6/site-packages configure:14077: checking for python3 extension module directory (pyexecdir) configure:14112: result: ${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages configure:14184: checking for bash configure:14219: result: /bin/sh configure:14291: checking for gcc configure:14323: result: mpicc configure:14393: checking for g++ configure:14425: result: mpicxx configure:14577: checking for C++ compiler version configure:14586: mpicxx --version >&5 icpc (ICC) 2021.6.0 20220226 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:14597: $? = 0 configure:14586: mpicxx -v >&5 icpc version 2021.6.0 (gcc version 8.3.1 compatibility) configure:14597: $? = 0 configure:14586: mpicxx -V >&5 Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:14597: $? = 0 configure:14586: mpicxx -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' icpc: command line error: no files specified; for help type "icpc -help" configure:14597: $? = 1 configure:14601: checking whether the compiler supports GNU C++ configure:14621: mpicxx -c conftest.cpp >&5 configure:14621: $? = 0 configure:14631: result: yes configure:14642: checking whether mpicxx accepts -g configure:14663: mpicxx -c -g conftest.cpp >&5 configure:14663: $? = 0 configure:14707: result: yes configure:14727: checking for mpicxx option to enable C++11 features configure:14742: mpicxx -c -g -O2 conftest.cpp >&5 configure:14742: $? = 0 configure:14760: result: none needed configure:14826: checking dependency style of mpicxx configure:14938: result: gcc3 configure:14971: checking how to run the C++ preprocessor configure:14993: mpicxx -E conftest.cpp configure:14993: $? = 0 configure:15008: mpicxx -E conftest.cpp conftest.cpp(25): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:15008: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15035: result: mpicxx -E configure:15049: mpicxx -E conftest.cpp configure:15049: $? = 0 configure:15064: mpicxx -E conftest.cpp conftest.cpp(25): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:15064: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15229: checking for ld used by mpicxx configure:15297: result: /usr/bin/ld -m elf_x86_64 configure:15304: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:15320: result: yes configure:15375: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16453: result: yes configure:16489: mpicxx -c -g -O2 conftest.cpp >&5 configure:16492: $? = 0 configure:16973: checking for mpicxx option to produce PIC configure:16981: result: -fPIC -DPIC configure:16989: checking if mpicxx PIC flag -fPIC -DPIC works configure:17008: mpicxx -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:17012: $? = 0 configure:17025: result: yes configure:17048: checking if mpicxx static flag -static works configure:17077: result: no configure:17089: checking if mpicxx supports -c -o file.o configure:17111: mpicxx -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:17115: $? = 0 configure:17137: result: yes configure:17142: checking if mpicxx supports -c -o file.o configure:17190: result: yes configure:17220: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17260: result: yes configure:17402: checking dynamic linker characteristics configure:18150: result: GNU/Linux ld.so configure:18215: checking how to hardcode library paths into programs configure:18240: result: immediate configure:18396: checking for Fortran 77 compiler version configure:18405: mpif77 --version >&5 ifort (IFORT) 2021.6.0 20220226 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:18416: $? = 0 configure:18405: mpif77 -v >&5 ifort version 2021.6.0 configure:18416: $? = 0 configure:18405: mpif77 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000 Copyright (C) 1985-2022 Intel Corporation. All rights reserved. configure:18416: $? = 0 configure:18405: mpif77 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' ifort: command line error: no files specified; for help type "ifort -help" configure:18416: $? = 1 configure:18425: checking whether the compiler supports GNU Fortran 77 configure:18439: mpif77 -c conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( : % [ . = => choke me ---------------^ conftest.F(3): error #6218: This statement is positioned incorrectly and/or has syntax errors. choke me -------^ compilation aborted for conftest.F (code 1) configure:18439: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:18449: result: no configure:18457: checking whether mpif77 accepts -g configure:18469: mpif77 -c -g conftest.f >&5 configure:18469: $? = 0 configure:18478: result: yes configure:18607: checking if libtool supports shared libraries configure:18609: result: yes configure:18612: checking whether to build shared libraries configure:18636: result: yes configure:18639: checking whether to build static libraries configure:18643: result: yes configure:18995: checking for mpif77 option to produce PIC configure:19003: result: -fPIC configure:19011: checking if mpif77 PIC flag -fPIC works configure:19030: mpif77 -c -g -fPIC conftest.f >&5 configure:19034: $? = 0 configure:19047: result: yes configure:19070: checking if mpif77 static flag -static works configure:19099: result: no configure:19111: checking if mpif77 supports -c -o file.o configure:19133: mpif77 -c -g -o out/conftest2.o conftest.f >&5 configure:19137: $? = 0 configure:19159: result: yes configure:19164: checking if mpif77 supports -c -o file.o configure:19212: result: yes configure:19242: checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:20459: result: yes configure:20601: checking dynamic linker characteristics configure:21343: result: GNU/Linux ld.so configure:21408: checking how to hardcode library paths into programs configure:21433: result: immediate configure:21466: checking for C/C++ restrict keyword configure:21496: mpicc -c -g -O2 conftest.c >&5 configure:21496: $? = 0 configure:21505: result: __restrict__ configure:21524: checking whether mpicxx supports C++17 features by default configure:22319: mpicxx -c -g -O2 conftest.cpp >&5 conftest.cpp(444): error: #error directive: "This is not a C++17 compiler" #error "This is not a C++17 compiler" ^ compilation aborted for conftest.cpp (code 2) configure:22319: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | /* end confdefs.h. */ | | | // If the compiler admits that it is not ready for C++11, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201103L | | #error "This is not a C++11 compiler" | | #else | | namespace cxx11 | { | | namespace test_static_assert | { | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | } | | namespace test_final_override | { | | struct Base | { | virtual ~Base() {} | virtual void f() {} | }; | | struct Derived : public Base | { | virtual ~Derived() override {} | virtual void f() override {} | }; | | } | | namespace test_double_right_angle_brackets | { | | template < typename T > | struct check {}; | | typedef check single_type; | typedef check> double_type; | typedef check>> triple_type; | typedef check>>> quadruple_type; | | } | | namespace test_decltype | { | | int | f() | { | int a = 1; | decltype(a) b = 2; | return a + b; | } | | } | | namespace test_type_deduction | { | | template < typename T1, typename T2 > | struct is_same | { | static const bool value = false; | }; | | template < typename T > | struct is_same | { | static const bool value = true; | }; | | template < typename T1, typename T2 > | auto | add(T1 a1, T2 a2) -> decltype(a1 + a2) | { | return a1 + a2; | } | | int | test(const int c, volatile int v) | { | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == false, ""); | auto ac = c; | auto av = v; | auto sumi = ac + av + 'x'; | auto sumf = ac + av + 1.0; | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == true, ""); | return (sumf > 0.0) ? sumi : add(c, v); | } | | } | | namespace test_noexcept | { | | int f() { return 0; } | int g() noexcept { return 0; } | | static_assert(noexcept(f()) == false, ""); | static_assert(noexcept(g()) == true, ""); | | } | | namespace test_constexpr | { | | template < typename CharT > | unsigned long constexpr | strlen_c_r(const CharT *const s, const unsigned long acc) noexcept | { | return *s ? strlen_c_r(s + 1, acc + 1) : acc; | } | | template < typename CharT > | unsigned long constexpr | strlen_c(const CharT *const s) noexcept | { | return strlen_c_r(s, 0UL); | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("1") == 1UL, ""); | static_assert(strlen_c("example") == 7UL, ""); | static_assert(strlen_c("another\0example") == 7UL, ""); | | } | | namespace test_rvalue_references | { | | template < int N > | struct answer | { | static constexpr int value = N; | }; | | answer<1> f(int&) { return answer<1>(); } | answer<2> f(const int&) { return answer<2>(); } | answer<3> f(int&&) { return answer<3>(); } | | void | test() | { | int i = 0; | const int c = 0; | static_assert(decltype(f(i))::value == 1, ""); | static_assert(decltype(f(c))::value == 2, ""); | static_assert(decltype(f(0))::value == 3, ""); | } | | } | | namespace test_uniform_initialization | { | | struct test | { | static const int zero {}; | static const int one {1}; | }; | | static_assert(test::zero == 0, ""); | static_assert(test::one == 1, ""); | | } | | namespace test_lambdas | { | | void | test1() | { | auto lambda1 = [](){}; | auto lambda2 = lambda1; | lambda1(); | lambda2(); | } | | int | test2() | { | auto a = [](int i, int j){ return i + j; }(1, 2); | auto b = []() -> int { return '0'; }(); | auto c = [=](){ return a + b; }(); | auto d = [&](){ return c; }(); | auto e = [a, &b](int x) mutable { | const auto identity = [](int y){ return y; }; | for (auto i = 0; i < a; ++i) | a += b--; | return x + identity(a + b); | }(0); | return a + b + c + d + e; | } | | int | test3() | { | const auto nullary = [](){ return 0; }; | const auto unary = [](int x){ return x; }; | using nullary_t = decltype(nullary); | using unary_t = decltype(unary); | const auto higher1st = [](nullary_t f){ return f(); }; | const auto higher2nd = [unary](nullary_t f1){ | return [unary, f1](unary_t f2){ return f2(unary(f1())); }; | }; | return higher1st(nullary) + higher2nd(nullary)(unary); | } | | } | | namespace test_variadic_templates | { | | template | struct sum; | | template | struct sum | { | static constexpr auto value = N0 + sum::value; | }; | | template <> | struct sum<> | { | static constexpr auto value = 0; | }; | | static_assert(sum<>::value == 0, ""); | static_assert(sum<1>::value == 1, ""); | static_assert(sum<23>::value == 23, ""); | static_assert(sum<1, 2>::value == 3, ""); | static_assert(sum<5, 5, 11>::value == 21, ""); | static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, ""); | | } | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function | // because of this. | namespace test_template_alias_sfinae | { | | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { func(0); } | | } | | } // namespace cxx11 | | #endif // __cplusplus >= 201103L | | | | | // If the compiler admits that it is not ready for C++14, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201402L | | #error "This is not a C++14 compiler" | | #else | | namespace cxx14 | { | | namespace test_polymorphic_lambdas | { | | int | test() | { | const auto lambda = [](auto&&... args){ | const auto istiny = [](auto x){ | return (sizeof(x) == 1UL) ? 1 : 0; | }; | const int aretiny[] = { istiny(args)... }; | return aretiny[0]; | }; | return lambda(1, 1L, 1.0f, '1'); | } | | } | | namespace test_binary_literals | { | | constexpr auto ivii = 0b0000000000101010; | static_assert(ivii == 42, "wrong value"); | | } | | namespace test_generalized_constexpr | { | | template < typename CharT > | constexpr unsigned long | strlen_c(const CharT *const s) noexcept | { | auto length = 0UL; | for (auto p = s; *p; ++p) | ++length; | return length; | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("x") == 1UL, ""); | static_assert(strlen_c("test") == 4UL, ""); | static_assert(strlen_c("another\0test") == 7UL, ""); | | } | | namespace test_lambda_init_capture | { | | int | test() | { | auto x = 0; | const auto lambda1 = [a = x](int b){ return a + b; }; | const auto lambda2 = [a = lambda1(x)](){ return a; }; | return lambda2(); | } | | } | | namespace test_digit_separators | { | | constexpr auto ten_million = 100'000'000; | static_assert(ten_million == 100000000, ""); | | } | | namespace test_return_type_deduction | { | | auto f(int& x) { return x; } | decltype(auto) g(int& x) { return x; } | | template < typename T1, typename T2 > | struct is_same | { | static constexpr auto value = false; | }; | | template < typename T > | struct is_same | { | static constexpr auto value = true; | }; | | int | test() | { | auto x = 0; | static_assert(is_same::value, ""); | static_assert(is_same::value, ""); | return x; | } | | } | | } // namespace cxx14 | | #endif // __cplusplus >= 201402L | | | | | // If the compiler admits that it is not ready for C++17, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201703L | | #error "This is not a C++17 compiler" | | #else | | #include | #include | #include | | namespace cxx17 | { | | namespace test_constexpr_lambdas | { | | constexpr int foo = [](){return 42;}(); | | } | | namespace test::nested_namespace::definitions | { | | } | | namespace test_fold_expression | { | | template | int multiply(Args... args) | { | return (args * ... * 1); | } | | template | bool all(Args... args) | { | return (args && ...); | } | | } | | namespace test_extended_static_assert | { | | static_assert (true); | | } | | namespace test_auto_brace_init_list | { | | auto foo = {5}; | auto bar {5}; | | static_assert(std::is_same, decltype(foo)>::value); | static_assert(std::is_same::value); | } | | namespace test_typename_in_template_template_parameter | { | | template typename X> struct D; | | } | | namespace test_fallthrough_nodiscard_maybe_unused_attributes | { | | int f1() | { | return 42; | } | | [[nodiscard]] int f2() | { | [[maybe_unused]] auto unused = f1(); | | switch (f1()) | { | case 17: | f1(); | [[fallthrough]]; | case 42: | f1(); | } | return f1(); | } | | } | | namespace test_extended_aggregate_initialization | { | | struct base1 | { | int b1, b2 = 42; | }; | | struct base2 | { | base2() { | b3 = 42; | } | int b3; | }; | | struct derived : base1, base2 | { | int d; | }; | | derived d1 {{1, 2}, {}, 4}; // full initialization | derived d2 {{}, {}, 4}; // value-initialized bases | | } | | namespace test_general_range_based_for_loop | { | | struct iter | { | int i; | | int& operator* () | { | return i; | } | | const int& operator* () const | { | return i; | } | | iter& operator++() | { | ++i; | return *this; | } | }; | | struct sentinel | { | int i; | }; | | bool operator== (const iter& i, const sentinel& s) | { | return i.i == s.i; | } | | bool operator!= (const iter& i, const sentinel& s) | { | return !(i == s); | } | | struct range | { | iter begin() const | { | return {0}; | } | | sentinel end() const | { | return {5}; | } | }; | | void f() | { | range r {}; | | for (auto i : r) | { | [[maybe_unused]] auto v = i; | } | } | | } | | namespace test_lambda_capture_asterisk_this_by_value | { | | struct t | { | int i; | int foo() | { | return [*this]() | { | return i; | }(); | } | }; | | } | | namespace test_enum_class_construction | { | | enum class byte : unsigned char | {}; | | byte foo {42}; | | } | | namespace test_constexpr_if | { | | template | int f () | { | if constexpr(cond) | { | return 13; | } | else | { | return 42; | } | } | | } | | namespace test_selection_statement_with_initializer | { | | int f() | { | return 13; | } | | int f2() | { | if (auto i = f(); i > 0) | { | return 3; | } | | switch (auto i = f(); i + 4) | { | case 17: | return 2; | | default: | return 1; | } | } | | } | | namespace test_template_argument_deduction_for_class_templates | { | | template | struct pair | { | pair (T1 p1, T2 p2) | : m1 {p1}, | m2 {p2} | {} | | T1 m1; | T2 m2; | }; | | void f() | { | [[maybe_unused]] auto p = pair{13, 42u}; | } | | } | | namespace test_non_type_auto_template_parameters | { | | template | struct B | {}; | | B<5> b1; | B<'a'> b2; | | } | | namespace test_structured_bindings | { | | int arr[2] = { 1, 2 }; | std::pair pr = { 1, 2 }; | | auto f1() -> int(&)[2] | { | return arr; | } | | auto f2() -> std::pair& | { | return pr; | } | | struct S | { | int x1 : 2; | volatile double y1; | }; | | S f3() | { | return {}; | } | | auto [ x1, y1 ] = f1(); | auto& [ xr1, yr1 ] = f1(); | auto [ x2, y2 ] = f2(); | auto& [ xr2, yr2 ] = f2(); | const auto [ x3, y3 ] = f3(); | | } | | namespace test_exception_spec_type_system | { | | struct Good {}; | struct Bad {}; | | void g1() noexcept; | void g2(); | | template | Bad | f(T*, T*); | | template | Good | f(T1*, T2*); | | static_assert (std::is_same_v); | | } | | namespace test_inline_variables | { | | template void f(T) | {} | | template inline T g(T) | { | return T{}; | } | | template<> inline void f<>(int) | {} | | template<> int g<>(int) | { | return 5; | } | | } | | } // namespace cxx17 | | #endif // __cplusplus < 201703L | | | configure:22327: result: no configure:22337: checking whether mpicxx supports C++17 features with -std=gnu++17 configure:23134: mpicxx -std=gnu++17 -c -g -O2 conftest.cpp >&5 configure:23134: $? = 0 configure:23144: result: yes configure:24018: checking for mpicc option to support OpenMP configure:24040: mpicc -c -g -O2 conftest.c >&5 conftest.c(29): error: #error directive: "OpenMP not supported" #error "OpenMP not supported" ^ compilation aborted for conftest.c (code 2) configure:24040: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | #error "OpenMP not supported" | #endif | #include | int main (void) { return omp_get_num_threads (); } | configure:24040: mpicc -c -g -O2 -fopenmp conftest.c >&5 configure:24040: $? = 0 configure:24052: mpicc -o conftest -g -O2 -fopenmp conftest.c >&5 configure:24052: $? = 0 configure:24075: result: -fopenmp configure:24132: checking for ar configure:24164: result: ar configure:24234: checking for cpp configure:24255: found /usr/bin/cpp configure:24266: result: cpp configure:24336: checking for ld configure:24368: result: /usr/bin/ld -m elf_x86_64 configure:24438: checking for nm configure:24470: result: /usr/bin/nm -B configure:24540: checking for ar configure:24572: result: ar configure:24642: checking for as configure:24663: found /usr/bin/as configure:24674: result: as configure:24744: checking for dlltool configure:24776: result: false configure:24846: checking for objdump configure:24878: result: objdump configure:24948: checking for strip configure:24980: result: strip configure:25050: checking for ranlib configure:25082: result: ranlib configure:25119: checking for special C compiler options needed for large files configure:25167: result: no configure:25173: checking for _FILE_OFFSET_BITS value needed for large files configure:25199: mpicc -c -g -O2 conftest.c >&5 configure:25199: $? = 0 configure:25233: result: no configure:25322: checking for getpagesize configure:25322: mpicc -o conftest -g -O2 conftest.c >&5 configure:25322: $? = 0 configure:25322: result: yes configure:25333: checking for working mmap configure:25485: mpicc -o conftest -g -O2 conftest.c >&5 configure:25485: $? = 0 configure:25485: ./conftest configure:25485: $? = 0 configure:25496: result: yes configure:25507: checking for struct stat.st_blksize configure:25507: mpicc -c -g -O2 conftest.c >&5 configure:25507: $? = 0 configure:25507: result: yes configure:25518: checking for sys/resource.h configure:25518: mpicc -c -g -O2 conftest.c >&5 configure:25518: $? = 0 configure:25518: result: yes configure:25525: checking for sys/times.h configure:25525: mpicc -c -g -O2 conftest.c >&5 configure:25525: $? = 0 configure:25525: result: yes configure:25532: checking for malloc.h configure:25532: mpicc -c -g -O2 conftest.c >&5 configure:25532: $? = 0 configure:25532: result: yes configure:25539: checking for glob.h configure:25539: mpicc -c -g -O2 conftest.c >&5 configure:25539: $? = 0 configure:25539: result: yes configure:25546: checking for fnmatch.h configure:25546: mpicc -c -g -O2 conftest.c >&5 configure:25546: $? = 0 configure:25546: result: yes configure:25553: checking for wordexp.h configure:25553: mpicc -c -g -O2 conftest.c >&5 configure:25553: $? = 0 configure:25553: result: yes configure:25560: checking for execinfo.h configure:25560: mpicc -c -g -O2 conftest.c >&5 configure:25560: $? = 0 configure:25560: result: yes configure:25569: checking for mallinfo configure:25569: mpicc -o conftest -g -O2 conftest.c >&5 configure:25569: $? = 0 configure:25569: result: yes configure:25576: checking for backtrace configure:25576: mpicc -o conftest -g -O2 conftest.c >&5 configure:25576: $? = 0 configure:25576: result: yes configure:25585: checking for getrlimit configure:25585: mpicc -o conftest -g -O2 conftest.c >&5 configure:25585: $? = 0 configure:25585: result: yes configure:25650: checking for feenableexcept configure:25650: mpicc -o conftest -g -O2 conftest.c >&5 configure:25650: $? = 0 configure:25650: result: yes configure:25658: checking for fenv_t.__control configure:25658: mpicc -c -g -O2 conftest.c >&5 conftest.c(51): error: struct "" has no field "__control" if (ac_aggr.__control) ^ compilation aborted for conftest.c (code 2) configure:25658: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main (void) | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:25658: mpicc -c -g -O2 conftest.c >&5 conftest.c(51): error: struct "" has no field "__control" if (sizeof ac_aggr.__control) ^ compilation aborted for conftest.c (code 2) configure:25658: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main (void) | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:25658: result: no configure:25667: checking for fenv_t.__mxcsr configure:25667: mpicc -c -g -O2 conftest.c >&5 configure:25667: $? = 0 configure:25667: result: yes configure:25691: checking C preprocessor flags for Fortran calling convention cfortran.h configure:25791: result: -DgFortran (probed) configure:25829: checking if C externals constructed with cfortran.h work configure:25890: mpicc -c -g -O2 -I./src -DgFortran conftest.c >&5 configure:25890: $? = 0 configure:25892: Renaming C object file. configure:25895: $? = 0 configure:25913: mpif77 -c -g conftest.f >&5 configure:25913: $? = 0 configure:25915: Renaming Fortran object file. configure:25918: $? = 0 configure:25975: mpif77 -o conftest -g conftest.f conftest_c.o conftest_f.o >&5 configure:25975: $? = 0 configure:25975: ./conftest configure:25975: $? = 0 configure:26010: result: yes configure:26075: checking how to run the C preprocessor configure:26143: result: cpp configure:26157: cpp -DgFortran conftest.c configure:26157: $? = 0 configure:26172: cpp -DgFortran conftest.c conftest.c:47:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:26172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | /* end confdefs.h. */ | #include configure:26206: checking for mpicc options needed to detect all undeclared functions configure:26228: mpicc -c -g -O2 -fopenmp -DgFortran conftest.c >&5 conftest.c(51): error: identifier "strchr" is undefined (void) strchr; ^ compilation aborted for conftest.c (code 2) configure:26228: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | /* end confdefs.h. */ | | int | main (void) | { | (void) strchr; | ; | return 0; | } configure:26255: mpicc -c -g -O2 -fopenmp -DgFortran conftest.c >&5 configure:26255: $? = 0 configure:26272: result: none needed configure:26466: checking whether mpicc is Clang configure:26493: result: no configure:26558: checking whether pthreads work with "-pthread" and "-lpthread" configure:26669: mpicc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:26669: $? = 0 configure:26679: result: yes configure:26802: checking for joinable pthread attribute configure:26821: mpicc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:26821: $? = 0 configure:26830: result: PTHREAD_CREATE_JOINABLE configure:26843: checking whether more special flags are required for pthreads configure:26857: result: no configure:26866: checking for PTHREAD_PRIO_INHERIT configure:26884: mpicc -o conftest -g -O2 -fopenmp -pthread -DgFortran conftest.c -lpthread >&5 configure:26884: $? = 0 configure:26894: result: yes configure:27244: checking for szlib library configure:27246: result: suppressed configure:27414: checking for hdf5.h configure:27414: mpicc -c -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran conftest.c >&5 configure:27414: $? = 0 configure:27414: result: yes configure:27421: checking for library containing H5Fopen configure:27451: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lpthread >&5 /tmp/icczEbR0S.o: In function `main': /root/software/cdo/cdo-2.1.1-netcdf-4.9.0/conftest.c:58: undefined reference to `H5Fopen' configure:27451: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | char H5Fopen (); | int | main (void) | { | return H5Fopen (); | ; | return 0; | } configure:27451: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lhdf5 -lpthread >&5 configure:27451: $? = 0 configure:27471: result: -lhdf5 configure:27484: checking for library containing H5DSis_scale configure:27514: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lhdf5 -lpthread >&5 /tmp/iccMAcwgo.o: In function `main': /root/software/cdo/cdo-2.1.1-netcdf-4.9.0/conftest.c:59: undefined reference to `H5DSis_scale' configure:27514: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | char H5DSis_scale (); | int | main (void) | { | return H5DSis_scale (); | ; | return 0; | } configure:27514: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 configure:27514: $? = 0 configure:27534: result: -lhdf5_hl configure:27771: checking for netcdf.h configure:27771: mpicc -c -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/include -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran conftest.c >&5 configure:27771: $? = 0 configure:27771: result: yes configure:27778: checking for library containing nc_open configure:27808: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/include -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/lib -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lhdf5_hl -lhdf5 -lpthread >&5 /tmp/iccPPy109.o: In function `main': /root/software/cdo/cdo-2.1.1-netcdf-4.9.0/conftest.c:60: undefined reference to `nc_open' configure:27808: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | char nc_open (); | int | main (void) | { | return nc_open (); | ; | return 0; | } configure:27808: mpicc -o conftest -g -O2 -fopenmp -pthread -I/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/include -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran -L/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/lib -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lpthread >&5 /opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/lib/libnetcdf.so: undefined reference to `__libm_feature_flag_x_init' /opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/lib/libnetcdf.so: undefined reference to `__libm_feature_flag_x' configure:27808: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "2.1.1" | #define PACKAGE_STRING "cdo 2.1.1" | #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "2.1.1" | #define PACKAGE "cdo" | #define VERSION "2.1.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict__ | #define HAVE_CXX17 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" | #define C_VERSION "icc (ICC) 2021.6.0 20220226" | #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" | #define SYSTEM_TYPE "x86_64-pc-linux-gnu" | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_FENV_T___MXCSR 1 | #define HAVE_CF_INTERFACE 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | char nc_open (); | int | main (void) | { | return nc_open (); | ; | return 0; | } configure:27828: result: no configure:27839: error: Could not link to NetCDF library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict__ ac_cv_c_undeclared_builtin_options='none needed' ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set=set ac_cv_env_F77_value=mpif77 ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_PYTHON_set= ac_cv_env_PYTHON_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=no ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_PYTHON=/usr/bin/python3 ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP=cpp ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_CPP=cpp ac_cv_prog_ac_ct_CXX=mpicxx ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_FILECMD=file ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c11= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_11=no ac_cv_prog_cxx_cxx11= ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_stdcxx= ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_nc_open=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_cf_flag='-DgFortran (probed)' acx_cv_cfortran_works=yes acx_cv_f77_cf_flag=-DgFortran am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_pathless_PYTHON=python3 am_cv_prog_cc_c_o=yes am_cv_python_platform=linux am_cv_python_pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages' am_cv_python_pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages' am_cv_python_version=3.6 ax_cv_PTHREAD_CLANG=no ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_PTHREAD_SPECIAL_FLAGS=no ax_cv_cxx_compile_cxx17=no ax_cv_cxx_compile_cxx17__std_gnupp17=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='/usr/bin/sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | /usr/bin/sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='/usr/bin/sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='/usr/bin/sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/missing'\'' aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} '\''/root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/missing'\'' autoconf' AUTOHEADER='${SHELL} '\''/root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/missing'\'' autoheader' AUTOMAKE='${SHELL} '\''/root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/missing'\'' automake-1.16' AWK='gawk' BASH='/bin/sh' CC='mpicc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp -pthread' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='cpp' CPPFLAGS='-I/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/include -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include -DgFortran' CSCOPE='cscope' CTAGS='ctags' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='mpicxx -std=gnu++17' CXXCPP='mpicxx -E -std=gnu++17' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp -pthread' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ACROSS='' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_APP_FALSE='' ENABLE_CDI_APP_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_FORTRAN='true' ENABLE_GRIB='' ENABLE_GRIBAPI='' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='no' ENABLE_NC4='no' ENABLE_NC4HDF5='no' ENABLE_NC4SZLIB='' ENABLE_NETCDF='no' ENABLE_SERVICE='' ENABLE_THREADS='yes' ETAGS='etags' EXEEXT='' F77='mpif77' FDB5_INCLUDE='' FDB5_LIBS='' FFLAGS='-g' FGREP='/usr/bin/grep -F' FILECMD='file' FORTRAN_WORKS='yes' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_CXX17='1' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='' HAVE_PYTHON_FALSE='#' HAVE_PYTHON_TRUE='' HDF5_INCLUDE=' -I/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/include' HDF5_LIBS=' -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib -lhdf5' HDF5_ROOT='/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0/lib -L/opt/ohpc/pub/libs/intel/openmpi4/hdf5/1.10.8/lib ' LIBOBJS='' LIBS='-lhdf5_hl -lhdf5 -lpthread ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} '\''/root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/missing'\'' makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE='' NETCDF_LIBS='' NETCDF_ROOT='/opt/ohpc/pub/libs/intel/openmpi4/netcdf/4.9.0' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='https://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 2.1.1' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='2.1.1' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='mpicc' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='-lpthread' PYTHON='/usr/bin/python3' PYTHON_EXEC_PREFIX='${exec_prefix}' PYTHON_PLATFORM='linux' PYTHON_PREFIX='${prefix}' PYTHON_VERSION='3.6' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-pc-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='' UUID_C_INCLUDE='' UUID_C_LIB='' VERSION='2.1.1' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='mpicc' ac_ct_CXX='mpicxx' ac_ct_DUMPBIN='' ac_ct_F77='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /root/software/cdo/cdo-2.1.1-netcdf-4.9.0/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='${pyexecdir}/cdo' pkgpythondir='${pythondir}/cdo' prefix='/opt/ohpc/pub/libs/intel-openmpi4/cdo/2.1.1' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='${PYTHON_EXEC_PREFIX}/lib64/python3.6/site-packages' pythondir='${PYTHON_PREFIX}/lib/python3.6/site-packages' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs_extra='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "2.1.1" #define PACKAGE_STRING "cdo 2.1.1" #define PACKAGE_BUGREPORT "https://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "2.1.1" #define PACKAGE "cdo" #define VERSION "2.1.1" #define HAVE_STDIO_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define STDC_HEADERS 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict__ #define HAVE_CXX17 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_MALLINFO 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define CXX_VERSION "Intel(R) C++ Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.6.0 Build 20220226_000000" #define C_VERSION "icc (ICC) 2021.6.0 20220226" #define F77_VERSION "ifort (IFORT) 2021.6.0 20220226" #define SYSTEM_TYPE "x86_64-pc-linux-gnu" #define HAVE_FEENABLEEXCEPT 1 #define HAVE_FENV_T___MXCSR 1 #define HAVE_CF_INTERFACE 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 configure: exit 1