[huawx@mgt cdo-1.9.9]$ ./configure --prefix=/data1/huawx/cdo-1.9.9 CFLAGS=-fPIC --with-netcdf=/data1/huawx/zliuawx/zlib --with-eccodes=/data1/huawx/eccodes-install --with-cfortran=/data1/huawx/cdo-1.9.9/cfortran checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for bash... /bin/sh checking for gcc... (cached) gcc checking for g++... g++ checking for gcc option to accept ISO C99... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for g77... g77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g77 option to produce PIC... -fPIC checking if g77 PIC flag -fPIC works... yes checking if g77 static flag -static works... no checking if g77 supports -c -o file.o... yes checking if g77 supports -c -o file.o... (cached) yes checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for C/C++ restrict keyword... __restrict checking whether g++ supports C++11 features by default... yes checking for gcc option to support OpenMP... -fopenmp checking for ar... (cached) ar checking for ld... /usr/bin/ld -m elf_x86_64 checking for nm... /usr/bin/nm -B checking for ar... (cached) ar checking for as... as checking for dlltool... false checking for objdump... (cached) objdump checking for strip... (cached) strip checking for ranlib... (cached) ranlib checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for struct stat.st_blksize... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking wordexp.h usability... yes checking wordexp.h presence... yes checking for wordexp.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for mallinfo... yes checking for backtrace... yes checking for getrlimit... yes checking for feenableexcept... no checking for fenv_t.__control... no checking for fenv_t.__mxcsr... yes checking C preprocessor flags for Fortran calling convention cfortran.h... f2cFortran (user-specified) checking if C externals constructed with cfortran.h work... error configure: Linking/Running with C EXTERNAL built with cfortran.h does not work! configure: Disabling cfortran.h bindings generation ./configure: line 23102: ----------------------------------------------------------------------: command not found checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... no CC:gcc CFLAGS:-fPIC -fopenmp -pthread LIBS:-lpthread checking for szlib library... suppressed checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for library containing H5Fopen... -lhdf5 checking for library containing H5DSis_scale... -lhdf5_hl checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking nc-config script... checking for nc-config... /data1/huawx/zlib/bin/nc-config checking netcdf's OpenDAP support... yes checking netcdf's nc2 support... yes checking netcdf's nc4 support... yes checking netcdf's nc4/hdf5 support... yes checking for library containing H5TS_mutex_lock... no checking for the UDUNITS2 library... suppressed checking for uuid/uuid.h extra include path... (none required) checking for library containing uuid_generate... -luuid checking for uuid/uuid.h... yes checking whether uuid_generate is declared... yes ./configure: line 25619: #include: command not found checking for the CMOR library... suppressed checking grib_api.h usability... yes checking grib_api.h presence... yes checking for grib_api.h... yes checking for library containing grib_get_message... -leccodes checking for the GRIB_API library... suppressed checking for GRIB support... yes checking for CGRIBEX support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for FFTW3 support... checking for the PROJ library... suppressed checking for the CURL library... suppressed checking for MAGICS library... suppressed checking for XML2 library... suppressed checking for build a separate CDI library and link CDO to it... no checking for building an additional static CDO binary... no checking for HIRLAM extensions... no checking for pthread_join using gcc -pthread -lpthread... yes checking whether gcc is Clang... (cached) no checking for joinable pthread attribute... (cached) PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... (cached) no checking for PTHREAD_PRIO_INHERIT... (cached) no CC:gcc CFLAGS:-fPIC -fopenmp -pthread -pthread LIBS:-lpthread -leccodes -lnetcdf -lhdf5_hl -lhdf5 -lpthread checking for szlib library... suppressed checking for netcdf.h... (cached) yes checking for library containing nc_open... (cached) -lnetcdf checking for nc-config... (cached) /data1/huawx/zlib/bin/nc-config checking netcdf's OpenDAP support... yes checking netcdf's nc2 support... yes checking netcdf's nc4 support... yes checking netcdf's nc4/hdf5 support... yes checking netcdf's nc4/szlib support... no checking for library containing H5TS_mutex_lock... (cached) no checking for library containing H5get_libversion... none required checking for grib_api.h... (cached) yes checking for library containing grib_get_message... (cached) -leccodes checking for the GRIB_API library... suppressed checking for GRIB support... yes checking for CGRIBEX support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for building an additional static CDI binary... no checking for HIRLAM extensions... no checking for gawk... (cached) gawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating test/cdoTestFunctions.test config.status: creating test/Afterburner.test config.status: creating test/Arith.test config.status: creating test/Arithc.test config.status: creating test/Cat.test config.status: creating test/Change.test config.status: creating test/Collgrid.test config.status: creating test/Comp.test config.status: creating test/Compc.test config.status: creating test/Copy_netcdf.test config.status: creating test/Detrend.test config.status: creating test/EOF.test config.status: creating test/EOFcoeff.test config.status: creating test/Enspctl.test config.status: creating test/Ensstat.test config.status: creating test/Expr.test config.status: creating test/File.test config.status: creating test/Filter.test config.status: creating test/Fldpctl.test config.status: creating test/Fldstat.test config.status: creating test/Genweights.test config.status: creating test/Gradsdes.test config.status: creating test/Gridarea.test config.status: creating test/Gridboxstat.test config.status: creating test/Inttime.test config.status: creating test/Isosurface.test config.status: creating test/MapReduce.test config.status: creating test/Mergetime.test config.status: creating test/Merstat.test config.status: creating test/Monarith.test config.status: creating test/Multiyearstat.test config.status: creating test/Ninfo.test config.status: creating test/Read_grib.test config.status: creating test/Read_netcdf.test config.status: creating test/Remap.test config.status: creating test/Remap2.test config.status: creating test/Remap3.test config.status: creating test/Remapeta.test config.status: creating test/Remapgrid.test config.status: creating test/Remapstat.test config.status: creating test/Runpctl.test config.status: creating test/Runstat.test config.status: creating test/Seasstat.test config.status: creating test/Select.test config.status: creating test/Setmiss.test config.status: creating test/Smooth.test config.status: creating test/Spectral.test config.status: creating test/Timpctl.test config.status: creating test/Timselstat.test config.status: creating test/Timselpctl.test config.status: creating test/Timstat.test config.status: creating test/Timstat2.test config.status: creating test/Varsstat.test config.status: creating test/Vertint.test config.status: creating test/Vertstat.test config.status: creating test/Wind.test config.status: creating test/Yeararith.test config.status: creating test/Ydrunstat.test config.status: creating test/Yearmonstat.test config.status: creating test/Ymonarith.test config.status: creating test/Zonstat.test config.status: creating test/threads.test config.status: creating test/tsformat.test config.status: creating test/userInput.test config.status: creating test/wildcard.test config.status: creating test/executeOnly/Splitsel.test config.status: creating contrib/Makefile config.status: creating cdo.spec config.status: creating cdo.settings config.status: creating Makefile config.status: creating src/lib/ncl/Makefile config.status: creating src/lib/yac/Makefile config.status: creating src/lib/gradsdes/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/data/Makefile config.status: creating test/executeOnly/Makefile config.status: creating test/bandit_tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in libcdi (/data1/huawx/cdo-1.9.9/libcdi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/data1/huawx/cdo-1.9.9' 'CFLAGS=-fPIC' '--with-netcdf=/data1/huawx/zlib' '--with-jasper=/data1/huawx/zlib' '--with-hdf5=/data1/huawx/zlib' '--with-eccodes=/data1/huawx/eccodes-install' '--with-cfortran=/data1/huawx/cdo-1.9.9/cfortran' 'CPPFLAGS=-Df2cFortran' --cache-file=/dev/null --srcdir=. configuring cdi 1.9.9 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for gcc option to accept ISO C99... none needed checking For conformance to POSIX.1-2001.... yes checking for C/C++ restrict keyword... __restrict checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no checking for g77... g77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 configure: setting up libtool checking any compiler has problems building shared objects... no checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g77 option to produce PIC... -fPIC checking if g77 PIC flag -fPIC works... yes checking if g77 static flag -static works... no checking if g77 supports -c -o file.o... yes checking if g77 supports -c -o file.o... (cached) yes checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: creating ./config.lt config.lt: creating libtool checking whether libtool can link C programs... yes checking whether libtool can link Fortran 77 programs... yes checking whether libtool can link C++ programs... yes checking whether byte ordering is bigendian... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for struct stat.st_blksize... yes checking for malloc.h... yes checking for unistd.h... (cached) yes checking for sys/time.h... yes checking for execinfo.h... yes checking size parameter type for backtrace()... int checking for library containing backtrace... none required checking for mallinfo... yes checking for getline... yes checking for uuid/uuid.h extra include path... (none required) checking for library containing uuid_generate... -luuid checking for uuid/uuid.h... yes checking whether uuid_generate is declared... yes ./configure: line 27659: #include: command not found checking whether isnan is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking whether PAGESIZE is declared... no checking whether PAGE_SIZE is declared... no checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_PAGESIZE is declared... yes checking whether _PC_REC_XFER_ALIGN is declared... yes checking whether POSIX_REC_XFER_ALIGN is declared... no checking whether __builtin_ctz is declared... yes checking for library containing floor... -lm checking if compiler needs -Werror to reject unknown flags... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... no CC:gcc CFLAGS:-fPIC -pthread LIBS: -lm -luuid checking for szlib library... suppressed checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc-config... /data1/huawx/zlib/bin/nc-config checking netcdf's OpenDAP support... yes checking netcdf's nc2 support... yes checking netcdf's nc4 support... yes checking netcdf's nc4/hdf5 support... yes checking netcdf's nc4/szlib support... no checking for library containing H5TS_mutex_lock... no checking for library containing H5get_libversion... none required checking for grib_api.h... yes checking for library containing grib_get_message... -leccodes checking for the GRIB_API library... suppressed checking for GRIB support... yes checking for CGRIBEX support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for building an additional static CDI binary... no checking for HIRLAM extensions... no checking for grib_get_length... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking C preprocessor flags for Fortran calling convention cfortran.h... f2cFortran (user-specified) checking if C externals constructed with cfortran.h work... error configure: Linking/Running with C EXTERNAL built with cfortran.h does not work! configure: Disabling cfortran.h bindings generation checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tests/test_cksum_grib config.status: creating tests/test_cksum_nc config.status: creating tests/test_cksum_nc2 config.status: creating tests/test_cksum_nc4 config.status: creating tests/test_cksum_extra config.status: creating tests/test_cksum_service config.status: creating tests/test_cksum_ieg config.status: creating tests/test_chunk_cksum config.status: creating tests/test_f2003 config.status: creating tests/pio_write_run config.status: creating tests/pio_write_deco2d_run config.status: creating tests/pio_cksum_mpinonb config.status: creating tests/pio_cksum_mpi_fw_ordered config.status: creating tests/pio_cksum_mpi_fw_at_all config.status: creating tests/pio_cksum_mpi_fw_at_reblock config.status: creating tests/pio_cksum_fpguard config.status: creating tests/pio_cksum_asynch config.status: creating tests/pio_cksum_writer config.status: creating tests/pio_cksum_cdf config.status: creating tests/test_byteswap_run config.status: creating tests/test_resource_copy_run config.status: creating tests/test_resource_copy_mpi_run config.status: creating tests/test_cdf_transformation config.status: creating tests/test_cdf_const config.status: creating tests/test_table_run config.status: creating tables/gen_tableheaderfile config.status: creating util/serialrun config.status: creating Makefile config.status: creating src/Makefile config.status: creating interfaces/Makefile config.status: creating app/Makefile config.status: creating tests/Makefile config.status: creating examples/Makefile config.status: creating cdi.settings config.status: creating examples/pio/Makefile config.status: creating src/pkgconfig/cdi.pc config.status: creating src/pkgconfig/cdipio.pc config.status: creating src/pkgconfig/cdi_f2003.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: CDI is configured with the following options: config.status: creating cdi.settings { "build" : { "tools" : { "CC" : "gcc", "CPP" : "gcc -E", "CPPFLAGS" : "-I/data1/huawx/eccodes-install/include -I/data1/huawx/zlib/include -Df2cFortran ", "CFLAGS" : "-fPIC -pthread", "LDFLAGS" : "-L/data1/huawx/eccodes-install/lib -L/data1/huawx/zlib/lib ", "LIBS" : "-leccodes -lnetcdf -lm -luuid", "FC" : "no", "F77" : "g77", "FCFLAGS" : "", "LD" : "/usr/bin/ld -m elf_x86_64", "NM" : "/usr/bin/nm -B", "AR" : "ar", "AS" : "@AS@", "DLLTOOL" : "false", "OBJDUMP" : "objdump", "STRIP" : "strip", "RANLIB" : "ranlib", "INSTALL" : "/usr/bin/install -c" }, "libraries" : { "threads" : { "lib" : "", "include" : "" }, "mpi" : { "libs" : "", "cflags" : "", "fclibs" : "", "fcflags" : "" }, "szlib" : { "lib" : "", "include" : "" }, "netcdf" : { "lib" : " -L/data1/huawx/zlib/lib -lnetcdf", "include" : " -I/data1/huawx/zlib/include" }, "grib_api" : { "lib" : "", "include" : "" }, "eccodes" : { "lib" : " -L/data1/huawx/eccodes-install/lib -leccodes", "include" : " -I/data1/huawx/eccodes-install/include" } }, "platform" : { "SYSTEM_TYPE" : "x86_64-pc-linux-gnu" } }, "features" : { "enable_cdi_lib" : false, "grib" : "yes", "cgribex" : "yes", "service" : "yes", "extra" : "yes", "ieg" : "yes", "enable_mpi" : false, "parallel_nc4" : 0, "enable_python" : false, "enable_ruby" : false } } configure: Configuration completed. You can now say 'make' to compile the CDI package and 'make install' to install it afterwards. configure: CDO is configured with the following options: { "build" : { "tools" : { "CXX" : "g++", "CC" : "gcc", "CPP" : "gcc -E", "CPPFLAGS" : "-I/data1/huawx/eccodes-install/include -I/data1/huawx/zlib/include -I/data1/huawx/eccodes-install/include -I/data1/huawx/zlib/include -I/data1/huawx/zlib/include -Df2cFortran", "CXXFLAGS" : "-g -O2 -fopenmp -pthread", "CFLAGS" : "-fPIC -fopenmp -pthread -pthread", "F77" : "g77", "FFLAGS" : "-g -O2", "LDFLAGS" : "-L/data1/huawx/eccodes-install/lib -L/data1/huawx/zlib/lib -L/data1/huawx/eccodes-install/lib -L/data1/huawx/zlib/lib -L/data1/huawx/zlib/lib ", "LIBS" : "-leccodes -lnetcdf -lpthread -leccodes -lnetcdf -lhdf5_hl -lhdf5 -lpthread ", "FCFLAGS" : "@FCFLAGS@", "INCLUDES" : "@INCLUDES@", "LD" : "/usr/bin/ld -m elf_x86_64", "NM" : "/usr/bin/nm -B", "AR" : "ar", "AS" : "as", "DLLTOOL" : "false", "OBJDUMP" : "objdump", "STRIP" : "strip", "RANLIB" : "ranlib", "INSTALL" : "/usr/bin/install -c", }, "libraries" : { "threads" : { "lib" : "", "include" : "" }, "szlib" : { "lib" : "", "include" : "" }, "hdf5" : { "lib" : " -L/data1/huawx/zlib/lib -lhdf5", "include" : " -I/data1/huawx/zlib/include" }, "netcdf" : { "lib" : " -L/data1/huawx/zlib/lib -lnetcdf", "include" : " -I/data1/huawx/zlib/include" }, "udunits2" : { "lib" : "", "include" : "" }, "proj" : { "lib" : "", "include" : "" }, "magics" : { "lib" : "", "include" : "" } }, "platform" : { "SYSTEM_TYPE" : "x86_64-pc-linux-gnu" }, }, "features" : { "enable_cdi_lib" : false, "enable_fortran" : true, "fortran_works" : "no", } } configure: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. [huawx@mgt cdo-1.9.9]$