This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.5.4, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-netcdf=/usr/local ## --------- ## ## Platform. ## ## --------- ## hostname = pmd02.pakmet.com uname -m = x86_64 uname -r = 2.6.18-128.el5 uname -s = Linux uname -v = #1 SMP Wed Dec 17 11:41:38 EST 2008 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/openmpi/bin PATH: /opt/lsf/7.0/linux2.6-glibc2.3-x86_64/etc PATH: /opt/lsf/7.0/linux2.6-glibc2.3-x86_64/bin PATH: /opt/kusu/bin PATH: /opt/kusu/sbin PATH: /usr/kerberos/sbin PATH: /home/openmpi/bin PATH: /opt/kusu/bin PATH: /opt/kusu/sbin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /opt/intel/Compiler/11.1/073/bin/intel64 PATH: /etc/opt/emcpower/bin PATH: /opt/intel/Compiler/11.1/073/bin/intel64 PATH: /home/openmpi/bin PATH: /home/pmdtest/bin PATH: /opt/intel/Compiler/11.1/073/bin/intel64 PATH: /home/openmpi/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2500: checking build system type configure:2514: result: x86_64-unknown-linux-gnu configure:2534: checking host system type configure:2547: result: x86_64-unknown-linux-gnu configure:2585: checking for a BSD-compatible install configure:2653: result: /usr/bin/install -c configure:2664: checking whether build environment is sane configure:2714: result: yes configure:2855: checking for a thread-safe mkdir -p configure:2894: result: /bin/mkdir -p configure:2907: checking for gawk configure:2923: found /bin/gawk configure:2934: result: gawk configure:2945: checking whether make sets $(MAKE) configure:2967: result: yes configure:3050: checking whether to enable maintainer-specific portions of Makefiles configure:3059: result: no configure:3074: setting up libtool configure:3122: checking how to print strings configure:3149: result: printf configure:3182: checking for style of include used by make configure:3210: result: GNU configure:3280: checking for gcc configure:3296: found /usr/bin/gcc configure:3307: result: gcc configure:3536: checking for C compiler version configure:3545: gcc --version >&5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3556: $? = 0 configure:3545: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-44) configure:3556: $? = 0 configure:3545: gcc -V >&5 gcc: '-V' option must have argument configure:3556: $? = 1 configure:3545: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3556: $? = 1 configure:3576: checking whether the C compiler works configure:3598: gcc conftest.c >&5 configure:3602: $? = 0 configure:3650: result: yes configure:3653: checking for C compiler default output file name configure:3655: result: a.out configure:3661: checking for suffix of executables configure:3668: gcc -o conftest conftest.c >&5 configure:3672: $? = 0 configure:3694: result: configure:3716: checking whether we are cross compiling configure:3724: gcc -o conftest conftest.c >&5 configure:3728: $? = 0 configure:3735: ./conftest configure:3739: $? = 0 configure:3754: result: no configure:3759: checking for suffix of object files configure:3781: gcc -c conftest.c >&5 configure:3785: $? = 0 configure:3806: result: o configure:3810: checking whether we are using the GNU C compiler configure:3829: gcc -c conftest.c >&5 configure:3829: $? = 0 configure:3838: result: yes configure:3847: checking whether gcc accepts -g configure:3867: gcc -c -g conftest.c >&5 configure:3867: $? = 0 configure:3908: result: yes configure:3925: checking for gcc option to accept ISO C89 configure:3989: gcc -c -g -O2 conftest.c >&5 configure:3989: $? = 0 configure:4002: result: none needed configure:4024: checking dependency style of gcc configure:4134: result: gcc3 configure:4149: checking for a sed that does not truncate output configure:4213: result: /bin/sed configure:4231: checking for grep that handles long lines and -e configure:4289: result: /bin/grep configure:4294: checking for egrep configure:4356: result: /bin/grep -E configure:4361: checking for fgrep configure:4423: result: /bin/grep -F configure:4458: checking for ld used by gcc configure:4525: result: /usr/bin/ld configure:4532: checking if the linker (/usr/bin/ld) is GNU ld configure:4547: result: yes configure:4559: checking for BSD- or MS-compatible name lister (nm) configure:4608: result: /usr/bin/nm -B configure:4738: checking the name lister (/usr/bin/nm -B) interface configure:4745: gcc -c -g -O2 conftest.c >&5 configure:4748: /usr/bin/nm -B "conftest.o" configure:4751: output 0000000000000000 B some_variable configure:4758: result: BSD nm configure:4761: checking whether ln -s works configure:4765: result: yes configure:4773: checking the maximum length of command line arguments configure:4898: result: 98304 configure:4915: checking whether the shell understands some XSI constructs configure:4925: result: yes configure:4929: checking whether the shell understands "+=" configure:4935: result: yes configure:4970: checking for /usr/bin/ld option to reload object files configure:4977: result: -r configure:5046: checking for objdump configure:5062: found /usr/bin/objdump configure:5073: result: objdump configure:5105: checking how to recognize dependent libraries configure:5307: result: pass_all configure:5367: checking for ar configure:5383: found /usr/bin/ar configure:5394: result: ar configure:5472: checking for strip configure:5488: found /usr/bin/strip configure:5499: result: strip configure:5571: checking for ranlib configure:5587: found /usr/bin/ranlib configure:5598: result: ranlib configure:5700: checking command to parse /usr/bin/nm -B output from gcc object configure:5818: gcc -c -g -O2 conftest.c >&5 configure:5821: $? = 0 configure:5825: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5828: $? = 0 configure:5882: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:5885: $? = 0 configure:5923: result: ok configure:6019: gcc -c -g -O2 conftest.c >&5 configure:6022: $? = 0 configure:6764: checking how to run the C preprocessor configure:6795: gcc -E conftest.c configure:6795: $? = 0 configure:6809: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6809: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | /* end confdefs.h. */ | #include configure:6834: result: gcc -E configure:6854: gcc -E conftest.c configure:6854: $? = 0 configure:6868: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6868: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | /* end confdefs.h. */ | #include configure:6897: checking for ANSI C header files configure:6917: gcc -c -g -O2 conftest.c >&5 configure:6917: $? = 0 configure:6990: gcc -o conftest -g -O2 conftest.c >&5 configure:6990: $? = 0 configure:6990: ./conftest configure:6990: $? = 0 configure:7001: result: yes configure:7014: checking for sys/types.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for sys/stat.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for stdlib.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for string.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for memory.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for strings.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for inttypes.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for stdint.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7014: checking for unistd.h configure:7014: gcc -c -g -O2 conftest.c >&5 configure:7014: $? = 0 configure:7014: result: yes configure:7028: checking for dlfcn.h configure:7028: gcc -c -g -O2 conftest.c >&5 configure:7028: $? = 0 configure:7028: result: yes configure:7215: checking for objdir configure:7230: result: .libs configure:7501: checking if gcc supports -fno-rtti -fno-exceptions configure:7519: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:7523: $? = 0 configure:7536: result: no configure:7556: checking for gcc option to produce PIC configure:7841: result: -fPIC -DPIC configure:7853: checking if gcc PIC flag -fPIC -DPIC works configure:7871: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:7875: $? = 0 configure:7888: result: yes configure:7912: checking if gcc static flag -static works configure:7940: result: yes configure:7955: checking if gcc supports -c -o file.o configure:7976: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:7980: $? = 0 configure:8002: result: yes configure:8010: checking if gcc supports -c -o file.o configure:8057: result: yes configure:8090: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:9165: result: yes configure:9202: checking whether -lc should be explicitly linked in configure:9210: gcc -c -g -O2 conftest.c >&5 configure:9213: $? = 0 configure:9228: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:9231: $? = 0 configure:9245: result: no configure:9410: checking dynamic linker characteristics configure:9865: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:9865: $? = 0 configure:10087: result: GNU/Linux ld.so configure:10194: checking how to hardcode library paths into programs configure:10219: result: immediate configure:10759: checking whether stripping libraries is possible configure:10764: result: yes configure:10799: checking if libtool supports shared libraries configure:10801: result: yes configure:10804: checking whether to build shared libraries configure:10825: result: yes configure:10828: checking whether to build static libraries configure:10832: result: yes configure:10911: checking for gcc configure:10938: result: gcc configure:10960: checking for gcc option to accept ISO C99 configure:11109: gcc -c -g -O2 conftest.c >&5 conftest.c:73: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127: error: 'newvar' undeclared (first use in this function) conftest.c:127: error: (Each undeclared identifier is reported only once conftest.c:127: error: for each function it appears in.) conftest.c:137: error: 'for' loop initial declaration used outside C99 mode configure:11109: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11109: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11109: $? = 0 configure:11129: result: -std=gnu99 configure:11138: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11169: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11173: $? = 0 configure:11179: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11183: $? = 0 configure:11194: cc -c conftest.c >&5 configure:11198: $? = 0 configure:11206: cc -c conftest.c -o conftest2.o >&5 configure:11210: $? = 0 configure:11216: cc -c conftest.c -o conftest2.o >&5 configure:11220: $? = 0 configure:11238: result: yes configure:11307: checking for ar configure:11334: result: ar configure:11491: checking for ld configure:11518: result: /usr/bin/ld -m elf_x86_64 configure:11583: checking for nm configure:11610: result: /usr/bin/nm -B configure:11675: checking for ar configure:11702: result: ar configure:11767: checking for as configure:11783: found /usr/bin/as configure:11794: result: as configure:11859: checking for dlltool configure:11889: result: no configure:11951: checking for objdump configure:11978: result: objdump configure:12043: checking for strip configure:12070: result: strip configure:12135: checking for ranlib configure:12162: result: ranlib configure:12243: checking for g++ configure:12259: found /usr/bin/g++ configure:12270: result: g++ configure:12297: checking for C++ compiler version configure:12306: g++ --version >&5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12317: $? = 0 configure:12306: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-44) configure:12317: $? = 0 configure:12306: g++ -V >&5 g++: '-V' option must have argument configure:12317: $? = 1 configure:12306: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:12317: $? = 1 configure:12321: checking whether we are using the GNU C++ compiler configure:12340: g++ -c conftest.cpp >&5 configure:12340: $? = 0 configure:12349: result: yes configure:12358: checking whether g++ accepts -g configure:12378: g++ -c -g conftest.cpp >&5 configure:12378: $? = 0 configure:12419: result: yes configure:12444: checking dependency style of g++ configure:12554: result: gcc3 configure:12577: checking how to run the C++ preprocessor configure:12604: g++ -E conftest.cpp configure:12604: $? = 0 configure:12618: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12618: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12643: result: g++ -E configure:12663: g++ -E conftest.cpp configure:12663: $? = 0 configure:12677: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12677: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12845: checking for ld used by g++ configure:12912: result: /usr/bin/ld -m elf_x86_64 configure:12919: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:12934: result: yes configure:12989: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13921: result: yes configure:13949: g++ -c -g -O2 conftest.cpp >&5 configure:13952: $? = 0 configure:14134: checking for g++ option to produce PIC configure:14456: result: -fPIC -DPIC configure:14465: checking if g++ PIC flag -fPIC -DPIC works configure:14483: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14487: $? = 0 configure:14500: result: yes configure:14521: checking if g++ static flag -static works configure:14549: result: yes configure:14561: checking if g++ supports -c -o file.o configure:14582: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14586: $? = 0 configure:14608: result: yes configure:14613: checking if g++ supports -c -o file.o configure:14660: result: yes configure:14690: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14718: result: yes configure:14861: checking dynamic linker characteristics configure:15472: result: GNU/Linux ld.so configure:15525: checking how to hardcode library paths into programs configure:15550: result: immediate configure:15601: checking for special C compiler options needed for large files configure:15646: result: no configure:15652: checking for _FILE_OFFSET_BITS value needed for large files configure:15677: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15677: $? = 0 configure:15709: result: no configure:15800: checking for stdlib.h configure:15800: result: yes configure:15800: checking for unistd.h configure:15800: result: yes configure:15800: checking for sys/param.h configure:15800: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15800: $? = 0 configure:15800: result: yes configure:15820: checking for getpagesize configure:15820: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15820: $? = 0 configure:15820: result: yes configure:15829: checking for working mmap configure:15976: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15976: $? = 0 configure:15976: ./conftest configure:15976: $? = 0 configure:15986: result: yes configure:15997: checking for malloc in -lmalloc configure:16022: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:35: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:16022: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:16031: result: no configure:16044: checking for struct stat.st_blksize configure:16044: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16044: $? = 0 configure:16044: result: yes configure:16058: checking sys/resource.h usability configure:16058: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16058: $? = 0 configure:16058: result: yes configure:16058: checking sys/resource.h presence configure:16058: gcc -E conftest.c configure:16058: $? = 0 configure:16058: result: yes configure:16058: checking for sys/resource.h configure:16058: result: yes configure:16070: checking sys/times.h usability configure:16070: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16070: $? = 0 configure:16070: result: yes configure:16070: checking sys/times.h presence configure:16070: gcc -E conftest.c configure:16070: $? = 0 configure:16070: result: yes configure:16070: checking for sys/times.h configure:16070: result: yes configure:16082: checking malloc.h usability configure:16082: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16082: $? = 0 configure:16082: result: yes configure:16082: checking malloc.h presence configure:16082: gcc -E conftest.c configure:16082: $? = 0 configure:16082: result: yes configure:16082: checking for malloc.h configure:16082: result: yes configure:16096: checking for mallinfo configure:16096: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16096: $? = 0 configure:16096: result: yes configure:16109: checking for isnan configure:16109: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 conftest.c:56: warning: conflicting types for built-in function 'isnan' configure:16109: $? = 0 configure:16109: result: yes configure:16120: checking for getrlimit configure:16120: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16120: $? = 0 configure:16120: result: yes configure:16131: checking for gethostname configure:16131: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16131: $? = 0 configure:16131: result: yes configure:16197: checking for floor in -lm configure:16222: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 conftest.c:47: warning: conflicting types for built-in function 'floor' configure:16222: $? = 0 configure:16231: result: yes configure:16435: checking for the pthreads library -lpthreads configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status configure:16473: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16482: result: no configure:16380: checking whether pthreads work without any flags configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 /tmp/cc5gi4xm.o: In function `main': /home/pmdtest/cdo-1.5.4/conftest.c:48: undefined reference to `pthread_create' /home/pmdtest/cdo-1.5.4/conftest.c:49: undefined reference to `pthread_join' /home/pmdtest/cdo-1.5.4/conftest.c:51: undefined reference to `__pthread_register_cancel' /home/pmdtest/cdo-1.5.4/conftest.c:52: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16473: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16482: result: no configure:16385: checking whether pthreads work with -Kthread configure:16473: gcc -std=gnu99 -o conftest -g -O2 -Kthread conftest.c -lm >&5 gcc: unrecognized option '-Kthread' /tmp/ccU5l49j.o: In function `main': /home/pmdtest/cdo-1.5.4/conftest.c:48: undefined reference to `pthread_create' /home/pmdtest/cdo-1.5.4/conftest.c:49: undefined reference to `pthread_join' /home/pmdtest/cdo-1.5.4/conftest.c:51: undefined reference to `__pthread_register_cancel' /home/pmdtest/cdo-1.5.4/conftest.c:52: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16473: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16482: result: no configure:16385: checking whether pthreads work with -kthread configure:16473: gcc -std=gnu99 -o conftest -g -O2 -kthread conftest.c -lm >&5 gcc: unrecognized option '-kthread' /tmp/cc4yhWAt.o: In function `main': /home/pmdtest/cdo-1.5.4/conftest.c:48: undefined reference to `pthread_create' /home/pmdtest/cdo-1.5.4/conftest.c:49: undefined reference to `pthread_join' /home/pmdtest/cdo-1.5.4/conftest.c:51: undefined reference to `__pthread_register_cancel' /home/pmdtest/cdo-1.5.4/conftest.c:52: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16473: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16482: result: no configure:16435: checking for the pthreads library -llthread configure:16473: gcc -std=gnu99 -o conftest -g -O2 conftest.c -llthread -lm >&5 /usr/bin/ld: cannot find -llthread collect2: ld returned 1 exit status configure:16473: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16482: result: no configure:16385: checking whether pthreads work with -pthread configure:16473: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16473: $? = 0 configure:16482: result: yes configure:16501: checking for joinable pthread attribute configure:16516: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16516: $? = 0 configure:16522: result: PTHREAD_CREATE_JOINABLE configure:16532: checking if more special flags are required for pthreads configure:16539: result: no configure:16860: checking zlib.h usability configure:16860: gcc -std=gnu99 -c -g -O2 -pthread conftest.c >&5 configure:16860: $? = 0 configure:16860: result: yes configure:16860: checking zlib.h presence configure:16860: gcc -E conftest.c configure:16860: $? = 0 configure:16860: result: yes configure:16860: checking for zlib.h configure:16860: result: yes configure:16870: checking for library containing deflate configure:16901: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 /tmp/ccg2Vki9.o: In function `main': /home/pmdtest/cdo-1.5.4/conftest.c:54: undefined reference to `deflate' collect2: ld returned 1 exit status configure:16901: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16901: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lz -lm >&5 configure:16901: $? = 0 configure:16918: result: -lz configure:17108: checking for szlib library configure:17110: result: suppressed configure:17426: checking for hdf5 library configure:17428: result: suppressed configure:17595: checking netcdf.h usability configure:17595: gcc -std=gnu99 -c -g -O2 -pthread -I/usr/local/include conftest.c >&5 configure:17595: $? = 0 configure:17595: result: yes configure:17595: checking netcdf.h presence configure:17595: gcc -E -I/usr/local/include conftest.c configure:17595: $? = 0 configure:17595: result: yes configure:17595: checking for netcdf.h configure:17595: result: yes configure:17605: checking for library containing nc_open configure:17636: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usr/local/include -L/usr/local/lib conftest.c -lz -lm >&5 /tmp/ccaUssqx.o: In function `main': /home/pmdtest/cdo-1.5.4/conftest.c:56: undefined reference to `nc_open' collect2: ld returned 1 exit status configure:17636: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17636: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lz -lm >&5 /usr/local/lib/libnetcdf.a(v1hpg.o): In function `v1h_put_NC_attrarray': v1hpg.c:(.text+0x18b7): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(v1hpg.o): In function `v1h_get_NC_attrarray': v1hpg.c:(.text+0x3bdb): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(var.o): In function `new_x_NC_var': var.c:(.text+0x7b): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(var.o): In function `dup_NC_vararrayV': var.c:(.text+0x331): undefined reference to `_intel_fast_memset' var.c:(.text+0x3be): undefined reference to `__intel_sse2_strlen' var.c:(.text+0x42f): undefined reference to `_intel_fast_memset' var.c:(.text+0x481): undefined reference to `_intel_fast_memcpy' var.c:(.text+0x4c1): undefined reference to `_intel_fast_memcpy' var.c:(.text+0x4d6): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(var.o): In function `NC_findvar': var.c:(.text+0x718): undefined reference to `__intel_sse2_strlen' var.c:(.text+0x78d): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(var.o): In function `nc_def_var': var.c:(.text+0xc49): undefined reference to `__intel_sse2_strlen' var.c:(.text+0xca5): undefined reference to `__intel_sse2_strlen' var.c:(.text+0xd04): undefined reference to `__intel_sse2_strlen' var.c:(.text+0xd7a): undefined reference to `_intel_fast_memset' var.c:(.text+0xdd5): undefined reference to `_intel_fast_memcpy' var.c:(.text+0x1082): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(var.o): In function `nc_inq_varid': var.c:(.text+0x11ec): undefined reference to `__intel_sse2_strlen' var.c:(.text+0x1252): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(var.o): In function `nc_rename_var': var.c:(.text+0x1830): undefined reference to `__intel_sse2_strlen' var.c:(.text+0x1896): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(var.o):var.c:(.text+0x1946): more undefined references to `__intel_sse2_strlen' follow /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_px_get': posixio.c:(.text+0x291): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x440): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x52b): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x6bc): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x7a6): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x9f7): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_px_move': posixio.c:(.text+0xd9a): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0xec2): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x1076): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x111f): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(posixio.o): In function `px_get': posixio.c:(.text+0x130d): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x1485): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x1574): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x1705): undefined reference to `_intel_fast_memcpy' posixio.c:(.text+0x17fa): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x1a01): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_spx_get': posixio.c:(.text+0x20aa): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_spx_move': posixio.c:(.text+0x22f4): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_create': posixio.c:(.text+0x25be): undefined reference to `__intel_sse2_strlen' posixio.c:(.text+0x280d): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(posixio.o): In function `ncio_open': posixio.c:(.text+0x2aa5): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o): In function `dup_NC_attrarrayV': attr.c:(.text+0x351): undefined reference to `_intel_fast_memset' attr.c:(.text+0x3e4): undefined reference to `__intel_sse2_strlen' attr.c:(.text+0x4a5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(attr.o): In function `NC_findattr': attr.c:(.text+0x71b): undefined reference to `__intel_sse2_strlen' attr.c:(.text+0x786): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o): In function `nc_inq_attid': attr.c:(.text+0x9b2): undefined reference to `__intel_sse2_strlen' attr.c:(.text+0xa16): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o): In function `nc_inq_atttype': attr.c:(.text+0xb46): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o):attr.c:(.text+0xba6): more undefined references to `__intel_sse2_strlen' follow /usr/local/lib/libnetcdf.a(attr.o): In function `nc_copy_att': attr.c:(.text+0x1644): undefined reference to `_intel_fast_memcpy' attr.c:(.text+0x16fc): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(attr.o): In function `nc_del_att': attr.c:(.text+0x1931): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o): In function `nc_put_att_text': attr.c:(.text+0x1b4f): undefined reference to `__intel_sse2_strlen' attr.c:(.text+0x1bb0): undefined reference to `__intel_sse2_strlen' attr.c:(.text+0x1c6c): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o): In function `nc_get_att_text': attr.c:(.text+0x200a): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(attr.o):attr.c:(.text+0x206c): more undefined references to `__intel_sse2_strlen' follow /usr/local/lib/libnetcdf.a(ncx.o): In function `ncx_getn_schar_schar': ncx.c:(.text+0x11b5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(ncx.o): In function `ncx_getn_schar_uchar': ncx.c:(.text+0x11e5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(ncx.o): In function `ncx_pad_getn_schar_schar': ncx.c:(.text+0x148d): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(ncx.o): In function `ncx_pad_getn_schar_uchar': ncx.c:(.text+0x14cd): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(ncx.o): In function `ncx_putn_schar_schar': ncx.c:(.text+0x17f5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(ncx.o):ncx.c:(.text+0x1825): more undefined references to `_intel_fast_memcpy' follow /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_uchar': putget.c:(.text+0x1042): undefined reference to `_intel_fast_memset' putget.c:(.text+0x1172): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x11ba): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x13ec): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `fill_NC_var': putget.c:(.text+0x1749): undefined reference to `_intel_fast_memset' putget.c:(.text+0x1867): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x18af): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x1a4a): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_long': putget.c:(.text+0x2ac8): undefined reference to `_intel_fast_memset' putget.c:(.text+0x2bf8): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x2c40): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x2e72): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var_text': putget.c:(.text+0x867f): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var_uchar': putget.c:(.text+0x9378): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var_schar': putget.c:(.text+0xa988): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var_short': putget.c:(.text+0xbfde): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var_int': putget.c:(.text+0xd69e): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(putget.o):putget.c:(.text+0xed5e): more undefined references to `_intel_fast_memset' follow /usr/local/lib/libnetcdf.a(putget.o): In function `nc_get_vara_text': putget.c:(.text+0x1d7cc): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_get_vara_uchar': putget.c:(.text+0x1f984): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_get_vara_schar': putget.c:(.text+0x22634): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_get_vara_short': putget.c:(.text+0x250b9): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_get_vara_int': putget.c:(.text+0x27ba9): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o):putget.c:(.text+0x2a699): more undefined references to `_intel_fast_memcpy' follow /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_vara_text': putget.c:(.text+0x32805): undefined reference to `_intel_fast_memset' putget.c:(.text+0x32949): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x32997): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x32c1e): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_vara_uchar': putget.c:(.text+0x346b5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `NCvnrecs': putget.c:(.text+0x35e12): undefined reference to `_intel_fast_memset' putget.c:(.text+0x35f4c): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x35f91): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x36228): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x364c7): undefined reference to `_intel_fast_memset' putget.c:(.text+0x36602): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x3664a): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x3679d): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_vara_schar': putget.c:(.text+0x37dd5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_vara_short': putget.c:(.text+0x3a84a): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o):putget.c:(.text+0x3d32a): more undefined references to `_intel_fast_memcpy' follow /usr/local/lib/libnetcdf.a(putget.o): In function `nc_copy_var': putget.c:(.text+0x4a424): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4a713): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4a853): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4a898): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4acc0): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4b011): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4b257): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4b505): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4b63b): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4b689): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4b7b5): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_double': putget.c:(.text+0x4fc78): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4fda8): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x4fdf0): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x50022): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_float': putget.c:(.text+0x51188): undefined reference to `_intel_fast_memset' putget.c:(.text+0x512b8): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x51300): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x51532): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_int': putget.c:(.text+0x52698): undefined reference to `_intel_fast_memset' putget.c:(.text+0x527c8): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x52810): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x52a42): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_short': putget.c:(.text+0x53ba8): undefined reference to `_intel_fast_memset' putget.c:(.text+0x53cd8): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x53d20): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x53f52): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_text': putget.c:(.text+0x54505): undefined reference to `_intel_fast_memset' putget.c:(.text+0x5463d): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x5467f): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x54b11): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x54db8): undefined reference to `_intel_fast_memset' putget.c:(.text+0x54ee5): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x54f2d): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x55068): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(putget.o): In function `nc_put_var1_schar': putget.c:(.text+0x56102): undefined reference to `_intel_fast_memset' putget.c:(.text+0x56232): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x5627a): undefined reference to `_intel_fast_memcpy' putget.c:(.text+0x564ac): undefined reference to `_intel_fast_memcpy' /usr/local/lib/libnetcdf.a(dim.o): In function `dup_NC_dimarrayV': dim.c:(.text+0x30e): undefined reference to `_intel_fast_memset' dim.c:(.text+0x37d): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(dim.o): In function `nc_def_dim': dim.c:(.text+0x689): undefined reference to `__intel_sse2_strlen' dim.c:(.text+0x6e7): undefined reference to `__intel_sse2_strlen' dim.c:(.text+0x746): undefined reference to `__intel_sse2_strlen' dim.c:(.text+0x8b2): undefined reference to `__intel_sse2_strlen' /usr/local/lib/libnetcdf.a(dim.o):dim.c:(.text+0x9c6): more undefined references to `__intel_sse2_strlen' follow /usr/local/lib/libnetcdf.a(string.o): In function `new_NC_string': string.c:(.text+0xea): undefined reference to `_intel_fast_memset' /usr/local/lib/libnetcdf.a(string.o): In function `set_NC_string': string.c:(.text+0x19b): undefined reference to `__intel_sse2_strlen' string.c:(.text+0x1b0): undefined reference to `_intel_fast_memcpy' string.c:(.text+0x1c7): undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status configure:17636: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.4" | #define PACKAGE_STRING "cdo 1.5.4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" | #define USER_NAME "pmdtest" | #define HOST_NAME "pmd02.pakmet.com" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17653: result: no configure:17662: error: Could not link to netcdf library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_isnan=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_deflate=-lz ac_cv_search_nc_open=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=98304 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run automake-1.11' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -pthread' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/include ' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL=':' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_GRIB='' ENABLE_IEG='' ENABLE_SERVICE='' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HDF5_INCLUDE='' HDF5_LIBS='' HDF5_ROOT='' HOST_NAME='pmd02.pakmet.com' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LIBS='' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usr/local/lib ' LIBOBJS='' LIBS='-lz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/pmdtest/cdo-1.5.4/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE='' NETCDF_LIBS='' NETCDF_ROOT='/usr/local' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.5.4' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.5.4' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' USER_NAME='pmdtest' VERSION='1.5.4' ZLIB_INCLUDE='' ZLIB_LIBS=' -lz' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/pmdtest/cdo-1.5.4/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.5.4" #define PACKAGE_STRING "cdo 1.5.4" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.5.4" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MALLINFO 1 #define HAVE_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)" #define USER_NAME "pmdtest" #define HOST_NAME "pmd02.pakmet.com" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_NETCDF_H 1 configure: exit 1